Strain Fitness in Pantoea sp. MT58 around IAI47_19625

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19620 and IAI47_19625 overlap by 4 nucleotidesIAI47_19625 and IAI47_19630 are separated by 76 nucleotides IAI47_19620: IAI47_19620 - LacI family DNA-binding transcriptional regulator, at 154,525 to 155,541 _19620 IAI47_19625: IAI47_19625 - DeoR/GlpR transcriptional regulator, at 155,538 to 156,287 _19625 IAI47_19630: IAI47_19630 - DUF1479 domain-containing protein, at 156,364 to 157,629 _19630 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2at 154.552 kb on - strandat 154.552 kb on - strandat 154.604 kb on - strandat 154.666 kb on - strand, within IAI47_19620at 154.735 kb on + strand, within IAI47_19620at 154.735 kb on + strand, within IAI47_19620at 154.735 kb on + strand, within IAI47_19620at 154.735 kb on + strand, within IAI47_19620at 154.747 kb on + strand, within IAI47_19620at 154.747 kb on + strand, within IAI47_19620at 154.752 kb on + strand, within IAI47_19620at 154.752 kb on + strand, within IAI47_19620at 154.753 kb on - strand, within IAI47_19620at 154.760 kb on + strand, within IAI47_19620at 154.761 kb on - strand, within IAI47_19620at 154.761 kb on - strand, within IAI47_19620at 154.933 kb on - strand, within IAI47_19620at 154.962 kb on + strand, within IAI47_19620at 154.962 kb on + strand, within IAI47_19620at 154.963 kb on - strand, within IAI47_19620at 154.965 kb on + strand, within IAI47_19620at 154.993 kb on + strand, within IAI47_19620at 154.994 kb on - strand, within IAI47_19620at 155.002 kb on + strand, within IAI47_19620at 155.002 kb on + strand, within IAI47_19620at 155.003 kb on - strand, within IAI47_19620at 155.067 kb on + strand, within IAI47_19620at 155.069 kb on + strand, within IAI47_19620at 155.076 kb on + strand, within IAI47_19620at 155.076 kb on + strand, within IAI47_19620at 155.077 kb on - strand, within IAI47_19620at 155.077 kb on - strand, within IAI47_19620at 155.077 kb on - strand, within IAI47_19620at 155.172 kb on + strand, within IAI47_19620at 155.173 kb on - strand, within IAI47_19620at 155.185 kb on - strand, within IAI47_19620at 155.247 kb on + strand, within IAI47_19620at 155.247 kb on + strand, within IAI47_19620at 155.248 kb on - strand, within IAI47_19620at 155.266 kb on - strand, within IAI47_19620at 155.342 kb on + strand, within IAI47_19620at 155.342 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.371 kb on + strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.372 kb on - strand, within IAI47_19620at 155.373 kb on + strand, within IAI47_19620at 155.374 kb on - strand, within IAI47_19620at 155.374 kb on - strand, within IAI47_19620at 155.374 kb on - strand, within IAI47_19620at 155.413 kb on + strand, within IAI47_19620at 155.445 kb on - strandat 155.520 kb on + strandat 155.521 kb on - strandat 155.540 kb on - strandat 155.556 kb on + strandat 155.556 kb on + strandat 155.556 kb on + strandat 155.618 kb on + strand, within IAI47_19625at 155.618 kb on + strand, within IAI47_19625at 155.618 kb on + strand, within IAI47_19625at 155.619 kb on - strand, within IAI47_19625at 155.622 kb on + strand, within IAI47_19625at 155.623 kb on - strand, within IAI47_19625at 155.623 kb on - strand, within IAI47_19625at 155.623 kb on - strand, within IAI47_19625at 155.698 kb on + strand, within IAI47_19625at 155.698 kb on + strand, within IAI47_19625at 155.698 kb on + strand, within IAI47_19625at 155.698 kb on + strand, within IAI47_19625at 155.699 kb on - strand, within IAI47_19625at 155.699 kb on - strand, within IAI47_19625at 155.699 kb on - strand, within IAI47_19625at 155.730 kb on + strand, within IAI47_19625at 155.730 kb on + strand, within IAI47_19625at 155.730 kb on + strand, within IAI47_19625at 155.730 kb on + strand, within IAI47_19625at 155.730 kb on + strand, within IAI47_19625at 155.731 kb on - strand, within IAI47_19625at 155.731 kb on - strand, within IAI47_19625at 155.731 kb on - strand, within IAI47_19625at 155.731 kb on - strand, within IAI47_19625at 155.731 kb on - strand, within IAI47_19625at 155.750 kb on + strand, within IAI47_19625at 155.750 kb on + strand, within IAI47_19625at 155.751 kb on - strand, within IAI47_19625at 155.751 kb on - strand, within IAI47_19625at 155.751 kb on - strand, within IAI47_19625at 155.751 kb on - strand, within IAI47_19625at 155.751 kb on - strand, within IAI47_19625at 155.877 kb on + strand, within IAI47_19625at 155.877 kb on + strand, within IAI47_19625at 155.932 kb on + strand, within IAI47_19625at 155.932 kb on + strand, within IAI47_19625at 155.933 kb on - strand, within IAI47_19625at 155.954 kb on + strand, within IAI47_19625at 155.955 kb on - strand, within IAI47_19625at 155.955 kb on - strand, within IAI47_19625at 156.000 kb on - strand, within IAI47_19625at 156.000 kb on - strand, within IAI47_19625at 156.074 kb on + strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.075 kb on - strand, within IAI47_19625at 156.086 kb on + strand, within IAI47_19625at 156.087 kb on - strand, within IAI47_19625at 156.251 kb on + strandat 156.251 kb on + strandat 156.251 kb on + strandat 156.252 kb on - strandat 156.252 kb on - strandat 156.256 kb on - strandat 156.256 kb on - strandat 156.256 kb on - strandat 156.256 kb on - strandat 156.288 kb on - strandat 156.308 kb on + strandat 156.309 kb on - strandat 156.322 kb on + strandat 156.322 kb on + strandat 156.440 kb on + strandat 156.441 kb on - strandat 156.506 kb on + strand, within IAI47_19630at 156.543 kb on + strand, within IAI47_19630at 156.544 kb on - strand, within IAI47_19630at 156.544 kb on - strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.545 kb on + strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.546 kb on - strand, within IAI47_19630at 156.697 kb on + strand, within IAI47_19630at 156.698 kb on - strand, within IAI47_19630at 156.768 kb on - strand, within IAI47_19630at 156.768 kb on - strand, within IAI47_19630at 156.823 kb on - strand, within IAI47_19630at 156.890 kb on + strand, within IAI47_19630at 156.891 kb on - strand, within IAI47_19630at 156.891 kb on - strand, within IAI47_19630at 156.891 kb on - strand, within IAI47_19630at 156.898 kb on - strand, within IAI47_19630at 156.906 kb on + strand, within IAI47_19630at 156.932 kb on + strand, within IAI47_19630at 156.932 kb on + strand, within IAI47_19630at 156.932 kb on + strand, within IAI47_19630at 156.932 kb on + strand, within IAI47_19630at 156.932 kb on + strand, within IAI47_19630at 156.933 kb on - strand, within IAI47_19630at 156.978 kb on - strand, within IAI47_19630at 156.978 kb on - strand, within IAI47_19630at 157.035 kb on + strand, within IAI47_19630at 157.035 kb on + strand, within IAI47_19630at 157.035 kb on + strand, within IAI47_19630at 157.036 kb on - strand, within IAI47_19630at 157.036 kb on - strand, within IAI47_19630at 157.044 kb on + strand, within IAI47_19630at 157.044 kb on + strand, within IAI47_19630at 157.080 kb on + strand, within IAI47_19630at 157.081 kb on - strand, within IAI47_19630at 157.081 kb on - strand, within IAI47_19630at 157.081 kb on - strand, within IAI47_19630at 157.122 kb on + strand, within IAI47_19630at 157.122 kb on + strand, within IAI47_19630at 157.122 kb on + strand, within IAI47_19630at 157.123 kb on - strand, within IAI47_19630at 157.133 kb on - strand, within IAI47_19630at 157.205 kb on + strand, within IAI47_19630at 157.205 kb on + strand, within IAI47_19630at 157.205 kb on + strand, within IAI47_19630at 157.206 kb on - strand, within IAI47_19630at 157.206 kb on - strand, within IAI47_19630at 157.206 kb on - strand, within IAI47_19630at 157.206 kb on - strand, within IAI47_19630at 157.215 kb on - strand, within IAI47_19630at 157.271 kb on + strand, within IAI47_19630at 157.271 kb on + strand, within IAI47_19630at 157.271 kb on + strand, within IAI47_19630at 157.271 kb on + strand, within IAI47_19630at 157.272 kb on - strand, within IAI47_19630at 157.272 kb on - strand, within IAI47_19630

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
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154,552 - -0.3
154,552 - -0.2
154,604 - +0.3
154,666 - IAI47_19620 0.14 +1.6
154,735 + IAI47_19620 0.21 +1.8
154,735 + IAI47_19620 0.21 -0.5
154,735 + IAI47_19620 0.21 +0.9
154,735 + IAI47_19620 0.21 +1.5
154,747 + IAI47_19620 0.22 +0.6
154,747 + IAI47_19620 0.22 +0.8
154,752 + IAI47_19620 0.22 -0.7
154,752 + IAI47_19620 0.22 +0.8
154,753 - IAI47_19620 0.22 +1.4
154,760 + IAI47_19620 0.23 +1.0
154,761 - IAI47_19620 0.23 -1.7
154,761 - IAI47_19620 0.23 +0.7
154,933 - IAI47_19620 0.40 +1.2
154,962 + IAI47_19620 0.43 -0.2
154,962 + IAI47_19620 0.43 -0.0
154,963 - IAI47_19620 0.43 -0.7
154,965 + IAI47_19620 0.43 +0.7
154,993 + IAI47_19620 0.46 -0.3
154,994 - IAI47_19620 0.46 +1.2
155,002 + IAI47_19620 0.47 +0.2
155,002 + IAI47_19620 0.47 -1.0
155,003 - IAI47_19620 0.47 -0.4
155,067 + IAI47_19620 0.53 +0.2
155,069 + IAI47_19620 0.53 +2.6
155,076 + IAI47_19620 0.54 +1.2
155,076 + IAI47_19620 0.54 -1.0
155,077 - IAI47_19620 0.54 -0.8
155,077 - IAI47_19620 0.54 +0.4
155,077 - IAI47_19620 0.54 -0.4
155,172 + IAI47_19620 0.64 +0.0
155,173 - IAI47_19620 0.64 +1.6
155,185 - IAI47_19620 0.65 -0.2
155,247 + IAI47_19620 0.71 +0.3
155,247 + IAI47_19620 0.71 -0.3
155,248 - IAI47_19620 0.71 -0.3
155,266 - IAI47_19620 0.73 -0.6
155,342 + IAI47_19620 0.80 +1.0
155,342 + IAI47_19620 0.80 -0.6
155,371 + IAI47_19620 0.83 -0.3
155,371 + IAI47_19620 0.83 +1.0
155,371 + IAI47_19620 0.83 -0.1
155,371 + IAI47_19620 0.83 +1.1
155,371 + IAI47_19620 0.83 +0.6
155,371 + IAI47_19620 0.83 -0.6
155,371 + IAI47_19620 0.83 -1.3
155,371 + IAI47_19620 0.83 -1.0
155,371 + IAI47_19620 0.83 -0.9
155,371 + IAI47_19620 0.83 +0.1
155,371 + IAI47_19620 0.83 +1.0
155,371 + IAI47_19620 0.83 -0.6
155,371 + IAI47_19620 0.83 +0.2
155,371 + IAI47_19620 0.83 +0.1
155,371 + IAI47_19620 0.83 -0.2
155,372 - IAI47_19620 0.83 +0.6
155,372 - IAI47_19620 0.83 +1.1
155,372 - IAI47_19620 0.83 +0.6
155,372 - IAI47_19620 0.83 -1.3
155,372 - IAI47_19620 0.83 -0.2
155,372 - IAI47_19620 0.83 +0.3
155,373 + IAI47_19620 0.83 +0.7
155,374 - IAI47_19620 0.83 -0.3
155,374 - IAI47_19620 0.83 -0.6
155,374 - IAI47_19620 0.83 -0.1
155,413 + IAI47_19620 0.87 +1.6
155,445 - +1.3
155,520 + +0.2
155,521 - +1.5
155,540 - -0.1
155,556 + -0.9
155,556 + +0.3
155,556 + -1.7
155,618 + IAI47_19625 0.11 +1.1
155,618 + IAI47_19625 0.11 -0.3
155,618 + IAI47_19625 0.11 -0.9
155,619 - IAI47_19625 0.11 -0.6
155,622 + IAI47_19625 0.11 +0.5
155,623 - IAI47_19625 0.11 +0.4
155,623 - IAI47_19625 0.11 -0.8
155,623 - IAI47_19625 0.11 -0.1
155,698 + IAI47_19625 0.21 -2.0
155,698 + IAI47_19625 0.21 -0.3
155,698 + IAI47_19625 0.21 -0.9
155,698 + IAI47_19625 0.21 -2.3
155,699 - IAI47_19625 0.21 -1.4
155,699 - IAI47_19625 0.21 +0.3
155,699 - IAI47_19625 0.21 -1.0
155,730 + IAI47_19625 0.26 -0.8
155,730 + IAI47_19625 0.26 -0.8
155,730 + IAI47_19625 0.26 +0.7
155,730 + IAI47_19625 0.26 +0.6
155,730 + IAI47_19625 0.26 -1.3
155,731 - IAI47_19625 0.26 -0.5
155,731 - IAI47_19625 0.26 +0.5
155,731 - IAI47_19625 0.26 +0.9
155,731 - IAI47_19625 0.26 +0.9
155,731 - IAI47_19625 0.26 +0.7
155,750 + IAI47_19625 0.28 +0.2
155,750 + IAI47_19625 0.28 -1.4
155,751 - IAI47_19625 0.28 -1.7
155,751 - IAI47_19625 0.28 -0.5
155,751 - IAI47_19625 0.28 -0.5
155,751 - IAI47_19625 0.28 +0.4
155,751 - IAI47_19625 0.28 -1.1
155,877 + IAI47_19625 0.45 -2.2
155,877 + IAI47_19625 0.45 +0.9
155,932 + IAI47_19625 0.53 -0.6
155,932 + IAI47_19625 0.53 -1.1
155,933 - IAI47_19625 0.53 +1.3
155,954 + IAI47_19625 0.55 +0.2
155,955 - IAI47_19625 0.56 +0.9
155,955 - IAI47_19625 0.56 +0.8
156,000 - IAI47_19625 0.62 +1.4
156,000 - IAI47_19625 0.62 -0.7
156,074 + IAI47_19625 0.71 -0.6
156,075 - IAI47_19625 0.72 +1.1
156,075 - IAI47_19625 0.72 +0.9
156,075 - IAI47_19625 0.72 +0.5
156,075 - IAI47_19625 0.72 -0.6
156,075 - IAI47_19625 0.72 +0.6
156,075 - IAI47_19625 0.72 -0.9
156,086 + IAI47_19625 0.73 -0.1
156,087 - IAI47_19625 0.73 +0.2
156,251 + -1.8
156,251 + -1.4
156,251 + +2.0
156,252 - +1.5
156,252 - +0.5
156,256 - +0.5
156,256 - +1.0
156,256 - +1.6
156,256 - +2.1
156,288 - -0.2
156,308 + +1.1
156,309 - +0.0
156,322 + +0.8
156,322 + -0.5
156,440 + -1.6
156,441 - +0.7
156,506 + IAI47_19630 0.11 -1.0
156,543 + IAI47_19630 0.14 -2.6
156,544 - IAI47_19630 0.14 -1.3
156,544 - IAI47_19630 0.14 -0.9
156,545 + IAI47_19630 0.14 +1.3
156,545 + IAI47_19630 0.14 -0.6
156,545 + IAI47_19630 0.14 -0.5
156,545 + IAI47_19630 0.14 -0.1
156,545 + IAI47_19630 0.14 -1.2
156,545 + IAI47_19630 0.14 +0.0
156,545 + IAI47_19630 0.14 +0.1
156,545 + IAI47_19630 0.14 -0.6
156,545 + IAI47_19630 0.14 -0.1
156,545 + IAI47_19630 0.14 +0.6
156,545 + IAI47_19630 0.14 -1.6
156,545 + IAI47_19630 0.14 -1.0
156,545 + IAI47_19630 0.14 +0.4
156,545 + IAI47_19630 0.14 -0.3
156,545 + IAI47_19630 0.14 -0.3
156,545 + IAI47_19630 0.14 -1.1
156,545 + IAI47_19630 0.14 +1.5
156,545 + IAI47_19630 0.14 -1.3
156,545 + IAI47_19630 0.14 -0.7
156,545 + IAI47_19630 0.14 +1.9
156,545 + IAI47_19630 0.14 +1.1
156,545 + IAI47_19630 0.14 -0.6
156,545 + IAI47_19630 0.14 +0.7
156,545 + IAI47_19630 0.14 -0.1
156,545 + IAI47_19630 0.14 -0.3
156,546 - IAI47_19630 0.14 +1.1
156,546 - IAI47_19630 0.14 +0.8
156,546 - IAI47_19630 0.14 +0.9
156,546 - IAI47_19630 0.14 -0.6
156,546 - IAI47_19630 0.14 +0.5
156,546 - IAI47_19630 0.14 +1.0
156,546 - IAI47_19630 0.14 +0.5
156,546 - IAI47_19630 0.14 -0.0
156,546 - IAI47_19630 0.14 +1.4
156,546 - IAI47_19630 0.14 +0.1
156,546 - IAI47_19630 0.14 -0.6
156,546 - IAI47_19630 0.14 -0.4
156,546 - IAI47_19630 0.14 -0.1
156,546 - IAI47_19630 0.14 -0.8
156,546 - IAI47_19630 0.14 +1.1
156,697 + IAI47_19630 0.26 +0.5
156,698 - IAI47_19630 0.26 +2.7
156,768 - IAI47_19630 0.32 +0.3
156,768 - IAI47_19630 0.32 -0.3
156,823 - IAI47_19630 0.36 -1.8
156,890 + IAI47_19630 0.42 -0.5
156,891 - IAI47_19630 0.42 +0.6
156,891 - IAI47_19630 0.42 +1.6
156,891 - IAI47_19630 0.42 +0.0
156,898 - IAI47_19630 0.42 +1.1
156,906 + IAI47_19630 0.43 +0.6
156,932 + IAI47_19630 0.45 -0.6
156,932 + IAI47_19630 0.45 +1.5
156,932 + IAI47_19630 0.45 +1.6
156,932 + IAI47_19630 0.45 +2.4
156,932 + IAI47_19630 0.45 +0.6
156,933 - IAI47_19630 0.45 +0.8
156,978 - IAI47_19630 0.48 -0.7
156,978 - IAI47_19630 0.48 +1.2
157,035 + IAI47_19630 0.53 +0.6
157,035 + IAI47_19630 0.53 +1.6
157,035 + IAI47_19630 0.53 +1.4
157,036 - IAI47_19630 0.53 +0.7
157,036 - IAI47_19630 0.53 -1.4
157,044 + IAI47_19630 0.54 +0.0
157,044 + IAI47_19630 0.54 -1.1
157,080 + IAI47_19630 0.57 +1.2
157,081 - IAI47_19630 0.57 -1.6
157,081 - IAI47_19630 0.57 +1.1
157,081 - IAI47_19630 0.57 +0.8
157,122 + IAI47_19630 0.60 +0.3
157,122 + IAI47_19630 0.60 -0.9
157,122 + IAI47_19630 0.60 -0.9
157,123 - IAI47_19630 0.60 +0.5
157,133 - IAI47_19630 0.61 +0.6
157,205 + IAI47_19630 0.66 -0.5
157,205 + IAI47_19630 0.66 -2.0
157,205 + IAI47_19630 0.66 -0.4
157,206 - IAI47_19630 0.67 -1.4
157,206 - IAI47_19630 0.67 +0.2
157,206 - IAI47_19630 0.67 +1.3
157,206 - IAI47_19630 0.67 +0.9
157,215 - IAI47_19630 0.67 -0.6
157,271 + IAI47_19630 0.72 -1.2
157,271 + IAI47_19630 0.72 -1.1
157,271 + IAI47_19630 0.72 -0.3
157,271 + IAI47_19630 0.72 -0.3
157,272 - IAI47_19630 0.72 -0.4
157,272 - IAI47_19630 0.72 +0.9

Or see this region's nucleotide sequence