Strain Fitness in Marinobacter adhaerens HP15 around HP15_4173

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4171 and HP15_4172 are separated by 57 nucleotidesHP15_4172 and HP15_4173 are separated by 2 nucleotidesHP15_4173 and HP15_4174 are separated by 24 nucleotides HP15_4171: HP15_4171 - transcriptional regulator of molybdate metabolism, LysR family, at 4,407,157 to 4,408,338 _4171 HP15_4172: HP15_4172 - ATP synthase subunit E, at 4,408,396 to 4,408,872 _4172 HP15_4173: HP15_4173 - NADH dehydrogenase (quinone), at 4,408,875 to 4,410,413 _4173 HP15_4174: HP15_4174 - formate dehydrogenase, alpha subunit, at 4,410,438 to 4,413,338 _4174 Position (kb) 4408 4409 4410 4411Strain fitness (log2 ratio) -1 0 1 2at 4407.879 kb on - strand, within HP15_4171at 4407.973 kb on - strand, within HP15_4171at 4408.043 kb on - strand, within HP15_4171at 4408.055 kb on + strand, within HP15_4171at 4408.074 kb on - strand, within HP15_4171at 4408.074 kb on - strand, within HP15_4171at 4408.104 kb on - strand, within HP15_4171at 4408.204 kb on + strand, within HP15_4171at 4408.293 kb on - strandat 4408.425 kb on + strandat 4408.425 kb on - strandat 4408.460 kb on - strand, within HP15_4172at 4408.460 kb on - strand, within HP15_4172at 4408.467 kb on + strand, within HP15_4172at 4408.491 kb on - strand, within HP15_4172at 4408.501 kb on - strand, within HP15_4172at 4408.540 kb on - strand, within HP15_4172at 4408.632 kb on - strand, within HP15_4172at 4408.656 kb on - strand, within HP15_4172at 4408.656 kb on - strand, within HP15_4172at 4408.683 kb on - strand, within HP15_4172at 4408.689 kb on + strand, within HP15_4172at 4408.723 kb on - strand, within HP15_4172at 4408.756 kb on + strand, within HP15_4172at 4408.756 kb on + strand, within HP15_4172at 4408.756 kb on + strand, within HP15_4172at 4408.764 kb on - strand, within HP15_4172at 4408.766 kb on + strand, within HP15_4172at 4408.790 kb on + strand, within HP15_4172at 4408.815 kb on + strand, within HP15_4172at 4408.843 kb on - strandat 4408.950 kb on - strandat 4408.966 kb on + strandat 4409.012 kb on + strandat 4409.012 kb on + strandat 4409.020 kb on - strandat 4409.125 kb on + strand, within HP15_4173at 4409.186 kb on - strand, within HP15_4173at 4409.196 kb on - strand, within HP15_4173at 4409.263 kb on + strand, within HP15_4173at 4409.263 kb on + strand, within HP15_4173at 4409.271 kb on - strand, within HP15_4173at 4409.271 kb on - strand, within HP15_4173at 4409.282 kb on + strand, within HP15_4173at 4409.294 kb on + strand, within HP15_4173at 4409.309 kb on + strand, within HP15_4173at 4409.317 kb on + strand, within HP15_4173at 4409.317 kb on + strand, within HP15_4173at 4409.317 kb on + strand, within HP15_4173at 4409.317 kb on - strand, within HP15_4173at 4409.389 kb on - strand, within HP15_4173at 4409.484 kb on - strand, within HP15_4173at 4409.494 kb on - strand, within HP15_4173at 4409.501 kb on - strand, within HP15_4173at 4409.521 kb on + strand, within HP15_4173at 4409.613 kb on + strand, within HP15_4173at 4409.692 kb on - strand, within HP15_4173at 4409.786 kb on + strand, within HP15_4173at 4409.793 kb on + strand, within HP15_4173at 4409.794 kb on - strand, within HP15_4173at 4409.794 kb on - strand, within HP15_4173at 4409.795 kb on + strand, within HP15_4173at 4409.810 kb on + strand, within HP15_4173at 4409.810 kb on + strand, within HP15_4173at 4409.810 kb on + strand, within HP15_4173at 4409.826 kb on - strand, within HP15_4173at 4409.852 kb on + strand, within HP15_4173at 4409.887 kb on - strand, within HP15_4173at 4409.889 kb on + strand, within HP15_4173at 4409.950 kb on + strand, within HP15_4173at 4409.978 kb on + strand, within HP15_4173at 4410.026 kb on - strand, within HP15_4173at 4410.085 kb on - strand, within HP15_4173at 4410.155 kb on - strand, within HP15_4173at 4410.157 kb on - strand, within HP15_4173at 4410.182 kb on + strand, within HP15_4173at 4410.182 kb on + strand, within HP15_4173at 4410.182 kb on + strand, within HP15_4173at 4410.182 kb on + strand, within HP15_4173at 4410.190 kb on + strand, within HP15_4173at 4410.190 kb on - strand, within HP15_4173at 4410.190 kb on - strand, within HP15_4173at 4410.190 kb on - strand, within HP15_4173at 4410.192 kb on + strand, within HP15_4173at 4410.209 kb on + strand, within HP15_4173at 4410.217 kb on - strand, within HP15_4173at 4410.241 kb on + strand, within HP15_4173at 4410.284 kb on + strandat 4410.285 kb on - strandat 4410.319 kb on - strandat 4410.364 kb on + strandat 4410.372 kb on - strandat 4410.401 kb on + strandat 4410.407 kb on + strandat 4410.565 kb on + strandat 4410.568 kb on + strandat 4410.622 kb on - strandat 4410.625 kb on - strandat 4410.671 kb on + strandat 4410.733 kb on + strand, within HP15_4174at 4410.793 kb on - strand, within HP15_4174at 4410.811 kb on + strand, within HP15_4174at 4410.851 kb on - strand, within HP15_4174at 4410.854 kb on + strand, within HP15_4174at 4410.862 kb on + strand, within HP15_4174at 4410.906 kb on - strand, within HP15_4174at 4410.921 kb on - strand, within HP15_4174at 4410.936 kb on - strand, within HP15_4174at 4410.981 kb on - strand, within HP15_4174at 4411.012 kb on + strand, within HP15_4174at 4411.061 kb on - strand, within HP15_4174at 4411.083 kb on + strand, within HP15_4174at 4411.113 kb on + strand, within HP15_4174at 4411.118 kb on + strand, within HP15_4174at 4411.126 kb on - strand, within HP15_4174at 4411.159 kb on + strand, within HP15_4174at 4411.184 kb on + strand, within HP15_4174at 4411.192 kb on - strand, within HP15_4174at 4411.214 kb on - strand, within HP15_4174at 4411.214 kb on - strand, within HP15_4174at 4411.264 kb on + strand, within HP15_4174

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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4,407,879 - HP15_4171 0.61 +0.7
4,407,973 - HP15_4171 0.69 +0.3
4,408,043 - HP15_4171 0.75 -0.2
4,408,055 + HP15_4171 0.76 -0.3
4,408,074 - HP15_4171 0.78 -0.0
4,408,074 - HP15_4171 0.78 -0.1
4,408,104 - HP15_4171 0.80 -0.4
4,408,204 + HP15_4171 0.89 -0.5
4,408,293 - +0.0
4,408,425 + -1.0
4,408,425 - -0.2
4,408,460 - HP15_4172 0.13 +1.3
4,408,460 - HP15_4172 0.13 -0.1
4,408,467 + HP15_4172 0.15 -0.7
4,408,491 - HP15_4172 0.20 +0.4
4,408,501 - HP15_4172 0.22 +0.7
4,408,540 - HP15_4172 0.30 +0.3
4,408,632 - HP15_4172 0.49 -0.0
4,408,656 - HP15_4172 0.55 +0.0
4,408,656 - HP15_4172 0.55 -0.1
4,408,683 - HP15_4172 0.60 -0.2
4,408,689 + HP15_4172 0.61 +0.3
4,408,723 - HP15_4172 0.69 -1.1
4,408,756 + HP15_4172 0.75 -0.3
4,408,756 + HP15_4172 0.75 -0.5
4,408,756 + HP15_4172 0.75 +0.2
4,408,764 - HP15_4172 0.77 -0.2
4,408,766 + HP15_4172 0.78 +0.5
4,408,790 + HP15_4172 0.83 +0.0
4,408,815 + HP15_4172 0.88 -0.0
4,408,843 - -0.6
4,408,950 - +0.3
4,408,966 + +0.1
4,409,012 + +0.3
4,409,012 + -0.1
4,409,020 - -1.1
4,409,125 + HP15_4173 0.16 +2.0
4,409,186 - HP15_4173 0.20 -0.1
4,409,196 - HP15_4173 0.21 +0.3
4,409,263 + HP15_4173 0.25 +0.1
4,409,263 + HP15_4173 0.25 -0.9
4,409,271 - HP15_4173 0.26 -0.7
4,409,271 - HP15_4173 0.26 +0.1
4,409,282 + HP15_4173 0.26 -0.2
4,409,294 + HP15_4173 0.27 +0.6
4,409,309 + HP15_4173 0.28 +0.3
4,409,317 + HP15_4173 0.29 -0.7
4,409,317 + HP15_4173 0.29 +0.0
4,409,317 + HP15_4173 0.29 -1.0
4,409,317 - HP15_4173 0.29 +0.4
4,409,389 - HP15_4173 0.33 +0.3
4,409,484 - HP15_4173 0.40 +1.1
4,409,494 - HP15_4173 0.40 +0.2
4,409,501 - HP15_4173 0.41 +0.4
4,409,521 + HP15_4173 0.42 +1.6
4,409,613 + HP15_4173 0.48 -0.1
4,409,692 - HP15_4173 0.53 -0.2
4,409,786 + HP15_4173 0.59 +0.4
4,409,793 + HP15_4173 0.60 +0.1
4,409,794 - HP15_4173 0.60 -0.8
4,409,794 - HP15_4173 0.60 -0.1
4,409,795 + HP15_4173 0.60 -0.3
4,409,810 + HP15_4173 0.61 +0.5
4,409,810 + HP15_4173 0.61 -0.3
4,409,810 + HP15_4173 0.61 +1.1
4,409,826 - HP15_4173 0.62 -0.0
4,409,852 + HP15_4173 0.63 +0.2
4,409,887 - HP15_4173 0.66 +0.0
4,409,889 + HP15_4173 0.66 +0.2
4,409,950 + HP15_4173 0.70 -0.9
4,409,978 + HP15_4173 0.72 +0.3
4,410,026 - HP15_4173 0.75 -0.3
4,410,085 - HP15_4173 0.79 +0.6
4,410,155 - HP15_4173 0.83 +0.5
4,410,157 - HP15_4173 0.83 -0.2
4,410,182 + HP15_4173 0.85 +1.1
4,410,182 + HP15_4173 0.85 +1.3
4,410,182 + HP15_4173 0.85 +0.5
4,410,182 + HP15_4173 0.85 +1.5
4,410,190 + HP15_4173 0.85 +0.1
4,410,190 - HP15_4173 0.85 +0.0
4,410,190 - HP15_4173 0.85 -0.2
4,410,190 - HP15_4173 0.85 -0.1
4,410,192 + HP15_4173 0.86 +0.2
4,410,209 + HP15_4173 0.87 +0.1
4,410,217 - HP15_4173 0.87 +0.1
4,410,241 + HP15_4173 0.89 +0.4
4,410,284 + +0.0
4,410,285 - +0.2
4,410,319 - +0.4
4,410,364 + +0.4
4,410,372 - -0.6
4,410,401 + +0.1
4,410,407 + -0.4
4,410,565 + +0.4
4,410,568 + -0.6
4,410,622 - -0.1
4,410,625 - +0.2
4,410,671 + +0.1
4,410,733 + HP15_4174 0.10 -0.1
4,410,793 - HP15_4174 0.12 +0.2
4,410,811 + HP15_4174 0.13 -1.0
4,410,851 - HP15_4174 0.14 +0.5
4,410,854 + HP15_4174 0.14 +0.2
4,410,862 + HP15_4174 0.15 -0.6
4,410,906 - HP15_4174 0.16 +1.0
4,410,921 - HP15_4174 0.17 -0.6
4,410,936 - HP15_4174 0.17 +0.7
4,410,981 - HP15_4174 0.19 +1.5
4,411,012 + HP15_4174 0.20 +0.2
4,411,061 - HP15_4174 0.21 -0.3
4,411,083 + HP15_4174 0.22 +0.0
4,411,113 + HP15_4174 0.23 +0.2
4,411,118 + HP15_4174 0.23 -0.5
4,411,126 - HP15_4174 0.24 +0.1
4,411,159 + HP15_4174 0.25 -1.2
4,411,184 + HP15_4174 0.26 +0.8
4,411,192 - HP15_4174 0.26 +0.2
4,411,214 - HP15_4174 0.27 +0.5
4,411,214 - HP15_4174 0.27 -0.8
4,411,264 + HP15_4174 0.28 +0.1

Or see this region's nucleotide sequence