Strain Fitness in Marinobacter adhaerens HP15 around HP15_4098

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4097 and HP15_4098 are separated by 71 nucleotidesHP15_4098 and HP15_4099 are separated by 8 nucleotidesHP15_4099 and HP15_4100 overlap by 13 nucleotides HP15_4097: HP15_4097 - inner-membrane translocator, at 4,331,144 to 4,332,187 _4097 HP15_4098: HP15_4098 - amino acids binding protein, at 4,332,259 to 4,333,467 _4098 HP15_4099: HP15_4099 - branched-chain amino acid ABC transporter, ATP-binding protein, at 4,333,476 to 4,334,285 _4099 HP15_4100: HP15_4100 - long-chain-fatty-acid-CoA ligase, at 4,334,273 to 4,336,084 _4100 Position (kb) 4332 4333 4334Strain fitness (log2 ratio) -2 -1 0 1at 4331.311 kb on - strand, within HP15_4097at 4331.329 kb on - strand, within HP15_4097at 4331.442 kb on + strand, within HP15_4097at 4331.450 kb on - strand, within HP15_4097at 4331.458 kb on + strand, within HP15_4097at 4331.489 kb on + strand, within HP15_4097at 4331.514 kb on + strand, within HP15_4097at 4331.518 kb on + strand, within HP15_4097at 4331.612 kb on - strand, within HP15_4097at 4331.695 kb on + strand, within HP15_4097at 4331.697 kb on - strand, within HP15_4097at 4331.792 kb on - strand, within HP15_4097at 4331.805 kb on - strand, within HP15_4097at 4331.834 kb on - strand, within HP15_4097at 4331.893 kb on - strand, within HP15_4097at 4331.945 kb on + strand, within HP15_4097at 4332.225 kb on - strandat 4332.319 kb on + strandat 4332.327 kb on - strandat 4332.332 kb on - strandat 4332.354 kb on - strandat 4332.354 kb on - strandat 4332.421 kb on - strand, within HP15_4098at 4332.443 kb on + strand, within HP15_4098at 4332.453 kb on + strand, within HP15_4098at 4332.627 kb on - strand, within HP15_4098at 4332.643 kb on + strand, within HP15_4098at 4332.643 kb on + strand, within HP15_4098at 4332.665 kb on + strand, within HP15_4098at 4332.846 kb on + strand, within HP15_4098at 4332.854 kb on - strand, within HP15_4098at 4333.021 kb on + strand, within HP15_4098at 4333.245 kb on + strand, within HP15_4098at 4333.245 kb on + strand, within HP15_4098at 4333.258 kb on - strand, within HP15_4098at 4333.271 kb on + strand, within HP15_4098at 4333.315 kb on + strand, within HP15_4098at 4333.315 kb on + strand, within HP15_4098at 4333.320 kb on + strand, within HP15_4098at 4333.323 kb on - strand, within HP15_4098at 4333.323 kb on - strand, within HP15_4098at 4333.333 kb on - strand, within HP15_4098at 4333.333 kb on - strand, within HP15_4098at 4333.333 kb on - strand, within HP15_4098at 4333.420 kb on + strandat 4333.449 kb on - strandat 4333.476 kb on + strandat 4333.512 kb on + strandat 4333.520 kb on - strandat 4333.551 kb on - strandat 4333.624 kb on - strand, within HP15_4099at 4333.666 kb on - strand, within HP15_4099at 4333.740 kb on - strand, within HP15_4099at 4333.780 kb on - strand, within HP15_4099at 4333.873 kb on + strand, within HP15_4099at 4333.943 kb on - strand, within HP15_4099at 4334.052 kb on + strand, within HP15_4099at 4334.070 kb on + strand, within HP15_4099at 4334.089 kb on - strand, within HP15_4099at 4334.126 kb on - strand, within HP15_4099at 4334.279 kb on + strandat 4334.331 kb on - strandat 4334.392 kb on + strandat 4334.400 kb on - strandat 4334.439 kb on - strandat 4334.444 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
4,331,311 - HP15_4097 0.16 -0.1
4,331,329 - HP15_4097 0.18 +0.8
4,331,442 + HP15_4097 0.29 +0.8
4,331,450 - HP15_4097 0.29 +0.4
4,331,458 + HP15_4097 0.30 -0.2
4,331,489 + HP15_4097 0.33 -0.3
4,331,514 + HP15_4097 0.35 -0.4
4,331,518 + HP15_4097 0.36 +0.0
4,331,612 - HP15_4097 0.45 +0.1
4,331,695 + HP15_4097 0.53 +0.6
4,331,697 - HP15_4097 0.53 +0.4
4,331,792 - HP15_4097 0.62 +0.1
4,331,805 - HP15_4097 0.63 -0.6
4,331,834 - HP15_4097 0.66 -0.4
4,331,893 - HP15_4097 0.72 -0.3
4,331,945 + HP15_4097 0.77 -0.1
4,332,225 - +0.2
4,332,319 + +0.1
4,332,327 - +0.4
4,332,332 - +0.2
4,332,354 - -0.2
4,332,354 - +0.4
4,332,421 - HP15_4098 0.13 +0.4
4,332,443 + HP15_4098 0.15 -1.1
4,332,453 + HP15_4098 0.16 +1.1
4,332,627 - HP15_4098 0.30 -0.6
4,332,643 + HP15_4098 0.32 +0.2
4,332,643 + HP15_4098 0.32 -0.4
4,332,665 + HP15_4098 0.34 +0.0
4,332,846 + HP15_4098 0.49 -0.3
4,332,854 - HP15_4098 0.49 -0.1
4,333,021 + HP15_4098 0.63 -0.7
4,333,245 + HP15_4098 0.82 -2.1
4,333,245 + HP15_4098 0.82 +0.3
4,333,258 - HP15_4098 0.83 +0.1
4,333,271 + HP15_4098 0.84 +0.5
4,333,315 + HP15_4098 0.87 +0.3
4,333,315 + HP15_4098 0.87 +0.3
4,333,320 + HP15_4098 0.88 -0.3
4,333,323 - HP15_4098 0.88 -0.4
4,333,323 - HP15_4098 0.88 -0.2
4,333,333 - HP15_4098 0.89 -0.7
4,333,333 - HP15_4098 0.89 -0.2
4,333,333 - HP15_4098 0.89 -0.2
4,333,420 + +0.3
4,333,449 - +0.5
4,333,476 + +0.5
4,333,512 + -0.2
4,333,520 - +1.3
4,333,551 - +1.4
4,333,624 - HP15_4099 0.18 -0.3
4,333,666 - HP15_4099 0.23 +0.1
4,333,740 - HP15_4099 0.33 +0.5
4,333,780 - HP15_4099 0.38 -0.1
4,333,873 + HP15_4099 0.49 -0.1
4,333,943 - HP15_4099 0.58 -0.2
4,334,052 + HP15_4099 0.71 -1.0
4,334,070 + HP15_4099 0.73 -0.2
4,334,089 - HP15_4099 0.76 +0.7
4,334,126 - HP15_4099 0.80 +0.0
4,334,279 + +0.6
4,334,331 - +0.1
4,334,392 + -0.4
4,334,400 - +0.2
4,334,439 - -0.7
4,334,444 - +0.4

Or see this region's nucleotide sequence