Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00230 and PGA1_262p00240 are separated by 126 nucleotides PGA1_262p00240 and PGA1_262p00250 are separated by 41 nucleotides PGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides PGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotides
PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073
_262p00230
PGA1_262p00240: PGA1_262p00240 - Protein of unknown function (DUF1289)., at 29,200 to 29,445
_262p00240
PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960
_262p00250
PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510
_262p00260
PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334
_262p00270
Position (kb) 29
30 Strain fitness (log2 ratio) -1
0
1 at 28.639 kb on + strand, within PGA1_262p00230 at 28.698 kb on - strand, within PGA1_262p00230 at 28.743 kb on + strand, within PGA1_262p00230 at 28.818 kb on + strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.942 kb on + strand at 28.943 kb on - strand at 28.964 kb on + strand at 29.088 kb on - strand at 29.153 kb on - strand at 29.174 kb on - strand at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.250 kb on + strand, within PGA1_262p00240 at 29.348 kb on + strand, within PGA1_262p00240 at 29.380 kb on + strand, within PGA1_262p00240 at 29.484 kb on + strand at 29.484 kb on + strand at 29.484 kb on + strand at 29.492 kb on - strand at 29.492 kb on - strand at 29.632 kb on + strand, within PGA1_262p00250 at 29.733 kb on + strand, within PGA1_262p00250 at 29.897 kb on + strand, within PGA1_262p00250 at 29.901 kb on - strand, within PGA1_262p00250 at 29.906 kb on - strand, within PGA1_262p00250 at 29.954 kb on + strand at 30.013 kb on + strand at 30.022 kb on - strand at 30.032 kb on - strand at 30.047 kb on + strand at 30.140 kb on + strand, within PGA1_262p00260 at 30.142 kb on - strand, within PGA1_262p00260 at 30.169 kb on + strand, within PGA1_262p00260 at 30.177 kb on - strand, within PGA1_262p00260 at 30.178 kb on - strand, within PGA1_262p00260 at 30.232 kb on - strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.283 kb on - strand, within PGA1_262p00260 at 30.343 kb on - strand, within PGA1_262p00260 at 30.402 kb on + strand, within PGA1_262p00260 at 30.493 kb on + strand at 30.589 kb on + strand at 30.597 kb on - strand at 30.597 kb on - strand at 30.657 kb on + strand at 30.703 kb on + strand at 30.822 kb on + strand, within PGA1_262p00270
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 28,639 + PGA1_262p00230 0.71 -0.1 28,698 - PGA1_262p00230 0.75 +0.4 28,743 + PGA1_262p00230 0.78 +0.4 28,818 + PGA1_262p00230 0.83 +0.3 28,913 - PGA1_262p00230 0.89 +1.3 28,913 - PGA1_262p00230 0.89 -0.6 28,942 + +1.0 28,943 - -0.1 28,964 + +0.2 29,088 - -0.3 29,153 - +0.3 29,174 - -0.2 29,230 - PGA1_262p00240 0.12 +0.4 29,230 - PGA1_262p00240 0.12 +0.2 29,230 - PGA1_262p00240 0.12 -0.2 29,250 + PGA1_262p00240 0.20 -0.4 29,348 + PGA1_262p00240 0.60 +1.4 29,380 + PGA1_262p00240 0.73 +0.1 29,484 + +0.1 29,484 + -0.8 29,484 + -0.7 29,492 - -1.0 29,492 - +0.2 29,632 + PGA1_262p00250 0.31 +0.4 29,733 + PGA1_262p00250 0.52 +0.2 29,897 + PGA1_262p00250 0.86 +0.8 29,901 - PGA1_262p00250 0.87 +1.2 29,906 - PGA1_262p00250 0.88 -0.4 29,954 + +0.9 30,013 + -0.2 30,022 - +0.8 30,032 - +0.2 30,047 + -0.3 30,140 + PGA1_262p00260 0.16 +0.1 30,142 - PGA1_262p00260 0.16 +0.2 30,169 + PGA1_262p00260 0.22 -1.0 30,177 - PGA1_262p00260 0.24 -0.5 30,178 - PGA1_262p00260 0.24 +0.4 30,232 - PGA1_262p00260 0.37 -0.4 30,268 + PGA1_262p00260 0.45 +0.4 30,268 + PGA1_262p00260 0.45 -0.1 30,268 + PGA1_262p00260 0.45 +0.6 30,283 - PGA1_262p00260 0.48 -1.1 30,343 - PGA1_262p00260 0.62 -0.2 30,402 + PGA1_262p00260 0.75 +0.5 30,493 + -1.3 30,589 + +0.5 30,597 - -0.4 30,597 - +0.2 30,657 + +0.5 30,703 + +0.5 30,822 + PGA1_262p00270 0.23 +0.7
Or see this region's nucleotide sequence