Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34140 and PGA1_c34150 overlap by 4 nucleotides PGA1_c34150 and PGA1_c34160 are separated by 3 nucleotides PGA1_c34160 and PGA1_c34170 are separated by 47 nucleotides
PGA1_c34140: PGA1_c34140 - histone deacetylase, at 3,577,187 to 3,578,113
_c34140
PGA1_c34150: PGA1_c34150 - exodeoxyribonuclease VII, small subunit, at 3,578,110 to 3,578,367
_c34150
PGA1_c34160: PGA1_c34160 - geranyltranstransferase IspA, at 3,578,371 to 3,579,270
_c34160
PGA1_c34170: PGA1_c34170 - 1-deoxy-D-xylulose-5-phosphate synthase Dxs, at 3,579,318 to 3,581,246
_c34170
Position (kb)
3578
3579 Strain fitness (log2 ratio)
-2
-1
0
1 at 3577.113 kb on - strand at 3577.181 kb on + strand at 3577.191 kb on + strand at 3577.194 kb on - strand at 3577.204 kb on - strand at 3577.243 kb on - strand at 3577.243 kb on - strand at 3577.284 kb on + strand, within PGA1_c34140 at 3577.298 kb on + strand, within PGA1_c34140 at 3577.333 kb on + strand, within PGA1_c34140 at 3577.398 kb on - strand, within PGA1_c34140 at 3577.459 kb on + strand, within PGA1_c34140 at 3577.470 kb on + strand, within PGA1_c34140 at 3577.470 kb on + strand, within PGA1_c34140 at 3577.478 kb on - strand, within PGA1_c34140 at 3577.478 kb on - strand, within PGA1_c34140 at 3577.499 kb on - strand, within PGA1_c34140 at 3577.519 kb on - strand, within PGA1_c34140 at 3577.629 kb on - strand, within PGA1_c34140 at 3577.631 kb on + strand, within PGA1_c34140 at 3577.631 kb on + strand, within PGA1_c34140 at 3577.787 kb on - strand, within PGA1_c34140 at 3577.831 kb on + strand, within PGA1_c34140 at 3577.839 kb on - strand, within PGA1_c34140 at 3577.839 kb on - strand, within PGA1_c34140 at 3577.858 kb on - strand, within PGA1_c34140 at 3577.927 kb on - strand, within PGA1_c34140 at 3577.998 kb on + strand, within PGA1_c34140 at 3578.006 kb on - strand, within PGA1_c34140 at 3578.079 kb on - strand at 3578.153 kb on + strand, within PGA1_c34150 at 3578.153 kb on + strand, within PGA1_c34150 at 3578.171 kb on - strand, within PGA1_c34150 at 3578.400 kb on + strand at 3578.650 kb on + strand, within PGA1_c34160 at 3578.803 kb on + strand, within PGA1_c34160 at 3578.834 kb on - strand, within PGA1_c34160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,577,113 - +0.9 3,577,181 + -1.0 3,577,191 + +0.8 3,577,194 - +0.3 3,577,204 - -0.3 3,577,243 - -0.7 3,577,243 - +0.4 3,577,284 + PGA1_c34140 0.10 -0.4 3,577,298 + PGA1_c34140 0.12 +0.6 3,577,333 + PGA1_c34140 0.16 +0.1 3,577,398 - PGA1_c34140 0.23 -0.7 3,577,459 + PGA1_c34140 0.29 -0.4 3,577,470 + PGA1_c34140 0.31 +0.4 3,577,470 + PGA1_c34140 0.31 +0.5 3,577,478 - PGA1_c34140 0.31 +0.1 3,577,478 - PGA1_c34140 0.31 -0.1 3,577,499 - PGA1_c34140 0.34 +0.2 3,577,519 - PGA1_c34140 0.36 +0.3 3,577,629 - PGA1_c34140 0.48 +0.4 3,577,631 + PGA1_c34140 0.48 -1.8 3,577,631 + PGA1_c34140 0.48 +0.0 3,577,787 - PGA1_c34140 0.65 +0.8 3,577,831 + PGA1_c34140 0.69 -0.0 3,577,839 - PGA1_c34140 0.70 +0.8 3,577,839 - PGA1_c34140 0.70 +0.6 3,577,858 - PGA1_c34140 0.72 +0.2 3,577,927 - PGA1_c34140 0.80 -0.5 3,577,998 + PGA1_c34140 0.87 +0.7 3,578,006 - PGA1_c34140 0.88 -0.2 3,578,079 - +0.1 3,578,153 + PGA1_c34150 0.17 +0.8 3,578,153 + PGA1_c34150 0.17 +1.2 3,578,171 - PGA1_c34150 0.24 +0.1 3,578,400 + -0.3 3,578,650 + PGA1_c34160 0.31 +0.3 3,578,803 + PGA1_c34160 0.48 -1.2 3,578,834 - PGA1_c34160 0.51 +0.7
Or see this region's nucleotide sequence