Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34150

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c34140 and PGA1_c34150 overlap by 4 nucleotidesPGA1_c34150 and PGA1_c34160 are separated by 3 nucleotidesPGA1_c34160 and PGA1_c34170 are separated by 47 nucleotides PGA1_c34140: PGA1_c34140 - histone deacetylase, at 3,577,187 to 3,578,113 _c34140 PGA1_c34150: PGA1_c34150 - exodeoxyribonuclease VII, small subunit, at 3,578,110 to 3,578,367 _c34150 PGA1_c34160: PGA1_c34160 - geranyltranstransferase IspA, at 3,578,371 to 3,579,270 _c34160 PGA1_c34170: PGA1_c34170 - 1-deoxy-D-xylulose-5-phosphate synthase Dxs, at 3,579,318 to 3,581,246 _c34170 Position (kb) 3578 3579Strain fitness (log2 ratio) -2 -1 0 1at 3577.113 kb on - strandat 3577.181 kb on + strandat 3577.191 kb on + strandat 3577.194 kb on - strandat 3577.204 kb on - strandat 3577.243 kb on - strandat 3577.243 kb on - strandat 3577.284 kb on + strand, within PGA1_c34140at 3577.298 kb on + strand, within PGA1_c34140at 3577.333 kb on + strand, within PGA1_c34140at 3577.398 kb on - strand, within PGA1_c34140at 3577.459 kb on + strand, within PGA1_c34140at 3577.470 kb on + strand, within PGA1_c34140at 3577.470 kb on + strand, within PGA1_c34140at 3577.478 kb on - strand, within PGA1_c34140at 3577.478 kb on - strand, within PGA1_c34140at 3577.499 kb on - strand, within PGA1_c34140at 3577.519 kb on - strand, within PGA1_c34140at 3577.629 kb on - strand, within PGA1_c34140at 3577.631 kb on + strand, within PGA1_c34140at 3577.631 kb on + strand, within PGA1_c34140at 3577.787 kb on - strand, within PGA1_c34140at 3577.831 kb on + strand, within PGA1_c34140at 3577.839 kb on - strand, within PGA1_c34140at 3577.839 kb on - strand, within PGA1_c34140at 3577.858 kb on - strand, within PGA1_c34140at 3577.927 kb on - strand, within PGA1_c34140at 3577.998 kb on + strand, within PGA1_c34140at 3578.006 kb on - strand, within PGA1_c34140at 3578.079 kb on - strandat 3578.153 kb on + strand, within PGA1_c34150at 3578.153 kb on + strand, within PGA1_c34150at 3578.171 kb on - strand, within PGA1_c34150at 3578.400 kb on + strandat 3578.650 kb on + strand, within PGA1_c34160at 3578.803 kb on + strand, within PGA1_c34160at 3578.834 kb on - strand, within PGA1_c34160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
3,577,113 - +0.9
3,577,181 + -1.0
3,577,191 + +0.8
3,577,194 - +0.3
3,577,204 - -0.3
3,577,243 - -0.7
3,577,243 - +0.4
3,577,284 + PGA1_c34140 0.10 -0.4
3,577,298 + PGA1_c34140 0.12 +0.6
3,577,333 + PGA1_c34140 0.16 +0.1
3,577,398 - PGA1_c34140 0.23 -0.7
3,577,459 + PGA1_c34140 0.29 -0.4
3,577,470 + PGA1_c34140 0.31 +0.4
3,577,470 + PGA1_c34140 0.31 +0.5
3,577,478 - PGA1_c34140 0.31 +0.1
3,577,478 - PGA1_c34140 0.31 -0.1
3,577,499 - PGA1_c34140 0.34 +0.2
3,577,519 - PGA1_c34140 0.36 +0.3
3,577,629 - PGA1_c34140 0.48 +0.4
3,577,631 + PGA1_c34140 0.48 -1.8
3,577,631 + PGA1_c34140 0.48 +0.0
3,577,787 - PGA1_c34140 0.65 +0.8
3,577,831 + PGA1_c34140 0.69 -0.0
3,577,839 - PGA1_c34140 0.70 +0.8
3,577,839 - PGA1_c34140 0.70 +0.6
3,577,858 - PGA1_c34140 0.72 +0.2
3,577,927 - PGA1_c34140 0.80 -0.5
3,577,998 + PGA1_c34140 0.87 +0.7
3,578,006 - PGA1_c34140 0.88 -0.2
3,578,079 - +0.1
3,578,153 + PGA1_c34150 0.17 +0.8
3,578,153 + PGA1_c34150 0.17 +1.2
3,578,171 - PGA1_c34150 0.24 +0.1
3,578,400 + -0.3
3,578,650 + PGA1_c34160 0.31 +0.3
3,578,803 + PGA1_c34160 0.48 -1.2
3,578,834 - PGA1_c34160 0.51 +0.7

Or see this region's nucleotide sequence