Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24800

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24780 and PGA1_c24790 are separated by 5 nucleotidesPGA1_c24790 and PGA1_c24800 are separated by 186 nucleotidesPGA1_c24800 and PGA1_c24810 are separated by 69 nucleotidesPGA1_c24810 and PGA1_c24820 are separated by 18 nucleotides PGA1_c24780: PGA1_c24780 - thioredoxin reductase TrxB, at 2,583,474 to 2,584,415 _c24780 PGA1_c24790: PGA1_c24790 - hypothetical protein, at 2,584,421 to 2,584,756 _c24790 PGA1_c24800: PGA1_c24800 - putative bifunctional SAT/APS kinase, at 2,584,943 to 2,587,018 _c24800 PGA1_c24810: PGA1_c24810 - Glycosyltransferase family 10 (fucosyltransferase)., at 2,587,088 to 2,587,957 _c24810 PGA1_c24820: PGA1_c24820 - phenazine biosynthesis protein, at 2,587,976 to 2,588,857 _c24820 Position (kb) 2584 2585 2586 2587 2588Strain fitness (log2 ratio) -1 0 1 2 3at 2584.406 kb on + strandat 2584.414 kb on - strandat 2584.516 kb on - strand, within PGA1_c24790at 2584.571 kb on - strand, within PGA1_c24790at 2584.662 kb on - strand, within PGA1_c24790at 2584.682 kb on + strand, within PGA1_c24790at 2584.750 kb on + strandat 2584.750 kb on + strandat 2584.758 kb on - strandat 2584.758 kb on - strandat 2584.952 kb on + strandat 2584.952 kb on + strandat 2584.964 kb on - strandat 2585.069 kb on - strandat 2585.094 kb on - strandat 2585.153 kb on + strand, within PGA1_c24800at 2585.257 kb on + strand, within PGA1_c24800at 2585.397 kb on + strand, within PGA1_c24800at 2585.540 kb on + strand, within PGA1_c24800at 2586.789 kb on + strand, within PGA1_c24800at 2586.979 kb on - strandat 2587.280 kb on - strand, within PGA1_c24810at 2587.287 kb on - strand, within PGA1_c24810at 2587.316 kb on - strand, within PGA1_c24810at 2587.326 kb on - strand, within PGA1_c24810at 2587.401 kb on - strand, within PGA1_c24810at 2587.466 kb on + strand, within PGA1_c24810at 2587.506 kb on + strand, within PGA1_c24810at 2587.523 kb on - strand, within PGA1_c24810at 2587.572 kb on - strand, within PGA1_c24810at 2587.607 kb on - strand, within PGA1_c24810at 2587.620 kb on + strand, within PGA1_c24810at 2587.654 kb on - strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.677 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.744 kb on - strand, within PGA1_c24810at 2587.744 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.785 kb on + strand, within PGA1_c24810at 2587.810 kb on - strand, within PGA1_c24810at 2587.914 kb on + strandat 2587.914 kb on + strandat 2587.922 kb on - strandat 2587.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,584,406 + +1.6
2,584,414 - -0.6
2,584,516 - PGA1_c24790 0.28 +0.1
2,584,571 - PGA1_c24790 0.45 -0.6
2,584,662 - PGA1_c24790 0.72 -0.6
2,584,682 + PGA1_c24790 0.78 -0.6
2,584,750 + -0.3
2,584,750 + -0.7
2,584,758 - +0.1
2,584,758 - +0.5
2,584,952 + +0.2
2,584,952 + -0.6
2,584,964 - +0.1
2,585,069 - +0.5
2,585,094 - -0.2
2,585,153 + PGA1_c24800 0.10 +0.1
2,585,257 + PGA1_c24800 0.15 -0.0
2,585,397 + PGA1_c24800 0.22 +1.8
2,585,540 + PGA1_c24800 0.29 +2.9
2,586,789 + PGA1_c24800 0.89 +0.4
2,586,979 - -0.3
2,587,280 - PGA1_c24810 0.22 +0.3
2,587,287 - PGA1_c24810 0.23 +0.1
2,587,316 - PGA1_c24810 0.26 +0.0
2,587,326 - PGA1_c24810 0.27 +0.6
2,587,401 - PGA1_c24810 0.36 -0.1
2,587,466 + PGA1_c24810 0.43 -1.2
2,587,506 + PGA1_c24810 0.48 -0.4
2,587,523 - PGA1_c24810 0.50 +0.2
2,587,572 - PGA1_c24810 0.56 -0.2
2,587,607 - PGA1_c24810 0.60 +0.0
2,587,620 + PGA1_c24810 0.61 -0.9
2,587,654 - PGA1_c24810 0.65 +0.2
2,587,674 + PGA1_c24810 0.67 +0.6
2,587,674 + PGA1_c24810 0.67 +0.7
2,587,674 + PGA1_c24810 0.67 -0.1
2,587,677 - PGA1_c24810 0.68 +0.0
2,587,682 - PGA1_c24810 0.68 -1.1
2,587,682 - PGA1_c24810 0.68 +0.0
2,587,682 - PGA1_c24810 0.68 -0.5
2,587,744 - PGA1_c24810 0.75 +0.1
2,587,744 - PGA1_c24810 0.75 -0.2
2,587,754 - PGA1_c24810 0.77 +0.5
2,587,754 - PGA1_c24810 0.77 +0.3
2,587,754 - PGA1_c24810 0.77 -0.9
2,587,785 + PGA1_c24810 0.80 -0.2
2,587,810 - PGA1_c24810 0.83 -0.8
2,587,914 + -0.3
2,587,914 + -0.5
2,587,922 - -0.1
2,587,980 - -0.5

Or see this region's nucleotide sequence