Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02000 and PGA1_c02010 are separated by 12 nucleotides PGA1_c02010 and PGA1_c02020 are separated by 148 nucleotides PGA1_c02020 and PGA1_c02030 are separated by 218 nucleotides
PGA1_c02000: PGA1_c02000 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztC, at 182,984 to 184,282
_c02000
PGA1_c02010: PGA1_c02010 - glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD, at 184,295 to 185,086
_c02010
PGA1_c02020: PGA1_c02020 - Predicted metal-binding protein, at 185,235 to 185,693
_c02020
PGA1_c02030: PGA1_c02030 - phosphoglycerate mutase-like protein, at 185,912 to 186,409
_c02030
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1 at 183.380 kb on - strand, within PGA1_c02000 at 183.380 kb on - strand, within PGA1_c02000 at 183.392 kb on + strand, within PGA1_c02000 at 183.473 kb on - strand, within PGA1_c02000 at 183.483 kb on - strand, within PGA1_c02000 at 183.530 kb on + strand, within PGA1_c02000 at 183.533 kb on - strand, within PGA1_c02000 at 183.533 kb on - strand, within PGA1_c02000 at 183.538 kb on - strand, within PGA1_c02000 at 183.541 kb on + strand, within PGA1_c02000 at 183.622 kb on + strand, within PGA1_c02000 at 183.635 kb on - strand, within PGA1_c02000 at 183.647 kb on - strand, within PGA1_c02000 at 183.674 kb on - strand, within PGA1_c02000 at 183.685 kb on - strand, within PGA1_c02000 at 183.685 kb on - strand, within PGA1_c02000 at 183.721 kb on + strand, within PGA1_c02000 at 183.736 kb on + strand, within PGA1_c02000 at 183.744 kb on - strand, within PGA1_c02000 at 183.744 kb on - strand, within PGA1_c02000 at 183.751 kb on + strand, within PGA1_c02000 at 183.751 kb on + strand, within PGA1_c02000 at 183.871 kb on + strand, within PGA1_c02000 at 183.939 kb on + strand, within PGA1_c02000 at 183.960 kb on - strand, within PGA1_c02000 at 183.979 kb on - strand, within PGA1_c02000 at 183.981 kb on + strand, within PGA1_c02000 at 183.989 kb on - strand, within PGA1_c02000 at 184.030 kb on + strand, within PGA1_c02000 at 184.086 kb on - strand, within PGA1_c02000 at 184.152 kb on + strand, within PGA1_c02000 at 184.192 kb on - strand at 184.192 kb on - strand at 184.247 kb on - strand at 184.276 kb on + strand at 184.276 kb on + strand at 184.279 kb on - strand at 184.284 kb on - strand at 184.284 kb on - strand at 184.476 kb on + strand, within PGA1_c02010 at 184.530 kb on - strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.542 kb on + strand, within PGA1_c02010 at 184.550 kb on - strand, within PGA1_c02010 at 184.555 kb on - strand, within PGA1_c02010 at 184.584 kb on + strand, within PGA1_c02010 at 184.584 kb on + strand, within PGA1_c02010 at 184.592 kb on - strand, within PGA1_c02010 at 184.592 kb on - strand, within PGA1_c02010 at 184.611 kb on + strand, within PGA1_c02010 at 184.620 kb on - strand, within PGA1_c02010 at 184.621 kb on + strand, within PGA1_c02010 at 184.663 kb on + strand, within PGA1_c02010 at 184.694 kb on + strand, within PGA1_c02010 at 184.768 kb on + strand, within PGA1_c02010 at 184.773 kb on - strand, within PGA1_c02010 at 184.773 kb on - strand, within PGA1_c02010 at 184.775 kb on + strand, within PGA1_c02010 at 184.775 kb on + strand, within PGA1_c02010 at 184.778 kb on - strand, within PGA1_c02010 at 184.786 kb on + strand, within PGA1_c02010 at 184.856 kb on - strand, within PGA1_c02010 at 184.912 kb on + strand, within PGA1_c02010 at 184.919 kb on + strand, within PGA1_c02010 at 184.929 kb on + strand, within PGA1_c02010 at 185.082 kb on + strand at 185.090 kb on - strand at 185.215 kb on + strand at 185.253 kb on + strand at 185.285 kb on - strand, within PGA1_c02020 at 185.323 kb on - strand, within PGA1_c02020 at 185.438 kb on + strand, within PGA1_c02020 at 185.438 kb on + strand, within PGA1_c02020 at 185.438 kb on - strand, within PGA1_c02020 at 185.446 kb on - strand, within PGA1_c02020 at 185.537 kb on + strand, within PGA1_c02020 at 185.545 kb on - strand, within PGA1_c02020 at 185.553 kb on - strand, within PGA1_c02020 at 185.688 kb on + strand at 185.717 kb on + strand at 185.717 kb on + strand at 185.725 kb on - strand at 185.736 kb on - strand at 185.911 kb on - strand at 185.913 kb on - strand at 186.010 kb on + strand, within PGA1_c02030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 183,380 - PGA1_c02000 0.30 -0.3 183,380 - PGA1_c02000 0.30 +1.0 183,392 + PGA1_c02000 0.31 -0.8 183,473 - PGA1_c02000 0.38 -0.5 183,483 - PGA1_c02000 0.38 +0.5 183,530 + PGA1_c02000 0.42 +0.5 183,533 - PGA1_c02000 0.42 -0.4 183,533 - PGA1_c02000 0.42 -0.1 183,538 - PGA1_c02000 0.43 -0.5 183,541 + PGA1_c02000 0.43 -0.9 183,622 + PGA1_c02000 0.49 +0.0 183,635 - PGA1_c02000 0.50 +1.1 183,647 - PGA1_c02000 0.51 +0.2 183,674 - PGA1_c02000 0.53 +0.0 183,685 - PGA1_c02000 0.54 -1.0 183,685 - PGA1_c02000 0.54 -0.3 183,721 + PGA1_c02000 0.57 +0.5 183,736 + PGA1_c02000 0.58 +0.3 183,744 - PGA1_c02000 0.59 +0.8 183,744 - PGA1_c02000 0.59 +0.1 183,751 + PGA1_c02000 0.59 -0.1 183,751 + PGA1_c02000 0.59 -0.6 183,871 + PGA1_c02000 0.68 -0.1 183,939 + PGA1_c02000 0.74 -0.4 183,960 - PGA1_c02000 0.75 +0.1 183,979 - PGA1_c02000 0.77 +0.4 183,981 + PGA1_c02000 0.77 +1.0 183,989 - PGA1_c02000 0.77 -0.1 184,030 + PGA1_c02000 0.81 -0.7 184,086 - PGA1_c02000 0.85 -0.0 184,152 + PGA1_c02000 0.90 -0.7 184,192 - +0.0 184,192 - -1.1 184,247 - -0.1 184,276 + +0.2 184,276 + -0.4 184,279 - +1.4 184,284 - -0.6 184,284 - +0.1 184,476 + PGA1_c02010 0.23 -0.9 184,530 - PGA1_c02010 0.30 -0.7 184,542 + PGA1_c02010 0.31 -0.0 184,542 + PGA1_c02010 0.31 -0.2 184,542 + PGA1_c02010 0.31 -0.5 184,542 + PGA1_c02010 0.31 +0.5 184,542 + PGA1_c02010 0.31 -0.0 184,550 - PGA1_c02010 0.32 -0.5 184,555 - PGA1_c02010 0.33 -0.4 184,584 + PGA1_c02010 0.36 -0.7 184,584 + PGA1_c02010 0.36 +0.2 184,592 - PGA1_c02010 0.38 -0.2 184,592 - PGA1_c02010 0.38 +0.9 184,611 + PGA1_c02010 0.40 +0.6 184,620 - PGA1_c02010 0.41 +0.1 184,621 + PGA1_c02010 0.41 -0.0 184,663 + PGA1_c02010 0.46 -0.2 184,694 + PGA1_c02010 0.50 +0.3 184,768 + PGA1_c02010 0.60 -0.2 184,773 - PGA1_c02010 0.60 +0.1 184,773 - PGA1_c02010 0.60 -0.2 184,775 + PGA1_c02010 0.61 +0.6 184,775 + PGA1_c02010 0.61 -0.4 184,778 - PGA1_c02010 0.61 +0.2 184,786 + PGA1_c02010 0.62 -0.0 184,856 - PGA1_c02010 0.71 +0.5 184,912 + PGA1_c02010 0.78 +0.1 184,919 + PGA1_c02010 0.79 -0.4 184,929 + PGA1_c02010 0.80 +0.4 185,082 + -0.7 185,090 - +0.7 185,215 + +0.4 185,253 + -0.5 185,285 - PGA1_c02020 0.11 +1.1 185,323 - PGA1_c02020 0.19 -0.4 185,438 + PGA1_c02020 0.44 +0.5 185,438 + PGA1_c02020 0.44 +0.4 185,438 - PGA1_c02020 0.44 -0.4 185,446 - PGA1_c02020 0.46 +0.8 185,537 + PGA1_c02020 0.66 -0.0 185,545 - PGA1_c02020 0.68 +0.8 185,553 - PGA1_c02020 0.69 +0.5 185,688 + +0.8 185,717 + -0.0 185,717 + -0.0 185,725 - -0.6 185,736 - -0.6 185,911 - -0.3 185,913 - -0.7 186,010 + PGA1_c02030 0.20 -0.1
Or see this region's nucleotide sequence