Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10250 and BWI76_RS10255 overlap by 17 nucleotides BWI76_RS10255 and BWI76_RS10260 are separated by 10 nucleotides BWI76_RS10260 and BWI76_RS10265 overlap by 14 nucleotides
BWI76_RS10250: BWI76_RS10250 - glutamine amidotransferase, at 2,170,877 to 2,171,974
_RS10250
BWI76_RS10255: BWI76_RS10255 - dihydrodipicolinate synthase family protein, at 2,171,958 to 2,172,881
_RS10255
BWI76_RS10260: BWI76_RS10260 - creatinase, at 2,172,892 to 2,174,061
_RS10260
BWI76_RS10265: BWI76_RS10265 - mandelate racemase/muconate lactonizing protein, at 2,174,048 to 2,175,148
_RS10265
Position (kb)
2172
2173
2174
2175 Strain fitness (log2 ratio)
-1
0
1 at 2171.900 kb on - strand at 2172.023 kb on - strand at 2172.023 kb on - strand at 2172.023 kb on - strand at 2172.668 kb on - strand, within BWI76_RS10255 at 2172.750 kb on + strand, within BWI76_RS10255 at 2172.750 kb on + strand, within BWI76_RS10255 at 2173.688 kb on + strand, within BWI76_RS10260 at 2173.696 kb on - strand, within BWI76_RS10260 at 2173.966 kb on + strand at 2173.974 kb on - strand at 2173.974 kb on - strand at 2174.069 kb on - strand at 2174.399 kb on + strand, within BWI76_RS10265 at 2174.485 kb on - strand, within BWI76_RS10265 at 2174.485 kb on - strand, within BWI76_RS10265 at 2174.799 kb on - strand, within BWI76_RS10265 at 2174.854 kb on - strand, within BWI76_RS10265 at 2174.904 kb on - strand, within BWI76_RS10265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,171,900 - -0.4 2,172,023 - -0.3 2,172,023 - +0.1 2,172,023 - -0.8 2,172,668 - BWI76_RS10255 0.77 +0.2 2,172,750 + BWI76_RS10255 0.86 -0.0 2,172,750 + BWI76_RS10255 0.86 +0.4 2,173,688 + BWI76_RS10260 0.68 -1.1 2,173,696 - BWI76_RS10260 0.69 -0.5 2,173,966 + +0.0 2,173,974 - -0.5 2,173,974 - +0.2 2,174,069 - -1.0 2,174,399 + BWI76_RS10265 0.32 +0.1 2,174,485 - BWI76_RS10265 0.40 +0.0 2,174,485 - BWI76_RS10265 0.40 +0.6 2,174,799 - BWI76_RS10265 0.68 -0.1 2,174,854 - BWI76_RS10265 0.73 +0.3 2,174,904 - BWI76_RS10265 0.78 -0.5
Or see this region's nucleotide sequence