Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.967.1 and Xcc-8004.968.1 are separated by 19 nucleotides Xcc-8004.968.1 and Xcc-8004.969.1 are separated by 93 nucleotides Xcc-8004.969.1 and Xcc-8004.970.1 are separated by 104 nucleotides
Xcc-8004.967.1: Xcc-8004.967.1 - Endonuclease/exonuclease/phosphatase family protein, at 919,402 to 920,169
Xcc-8004.967.1
Xcc-8004.968.1: Xcc-8004.968.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 920,189 to 921,010
Xcc-8004.968.1
Xcc-8004.969.1: Xcc-8004.969.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 921,104 to 921,754
Xcc-8004.969.1
Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656
Xcc-8004.970.1
Position (kb) 921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 920.175 kb on - strand at 920.175 kb on - strand at 920.175 kb on - strand at 920.175 kb on - strand at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.274 kb on + strand, within Xcc-8004.968.1 at 920.275 kb on - strand, within Xcc-8004.968.1 at 920.275 kb on - strand, within Xcc-8004.968.1 at 920.275 kb on - strand, within Xcc-8004.968.1 at 920.406 kb on + strand, within Xcc-8004.968.1 at 920.406 kb on + strand, within Xcc-8004.968.1 at 920.406 kb on + strand, within Xcc-8004.968.1 at 920.406 kb on + strand, within Xcc-8004.968.1 at 920.407 kb on - strand, within Xcc-8004.968.1 at 920.407 kb on - strand, within Xcc-8004.968.1 at 920.407 kb on - strand, within Xcc-8004.968.1 at 920.407 kb on - strand, within Xcc-8004.968.1 at 920.415 kb on + strand, within Xcc-8004.968.1 at 920.415 kb on + strand, within Xcc-8004.968.1 at 920.490 kb on + strand, within Xcc-8004.968.1 at 920.490 kb on + strand, within Xcc-8004.968.1 at 920.490 kb on + strand, within Xcc-8004.968.1 at 920.490 kb on + strand, within Xcc-8004.968.1 at 920.491 kb on - strand, within Xcc-8004.968.1 at 920.491 kb on - strand, within Xcc-8004.968.1 at 920.538 kb on + strand, within Xcc-8004.968.1 at 920.538 kb on + strand, within Xcc-8004.968.1 at 920.539 kb on - strand, within Xcc-8004.968.1 at 920.553 kb on + strand, within Xcc-8004.968.1 at 920.553 kb on + strand, within Xcc-8004.968.1 at 920.553 kb on + strand, within Xcc-8004.968.1 at 920.553 kb on + strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.554 kb on - strand, within Xcc-8004.968.1 at 920.589 kb on + strand, within Xcc-8004.968.1 at 920.590 kb on - strand, within Xcc-8004.968.1 at 920.590 kb on - strand, within Xcc-8004.968.1 at 920.670 kb on + strand, within Xcc-8004.968.1 at 920.671 kb on - strand, within Xcc-8004.968.1 at 920.671 kb on - strand, within Xcc-8004.968.1 at 920.671 kb on - strand, within Xcc-8004.968.1 at 920.715 kb on + strand, within Xcc-8004.968.1 at 921.096 kb on + strand at 921.144 kb on + strand at 921.145 kb on - strand at 921.171 kb on + strand, within Xcc-8004.969.1 at 921.171 kb on + strand, within Xcc-8004.969.1 at 921.172 kb on - strand, within Xcc-8004.969.1 at 921.172 kb on - strand, within Xcc-8004.969.1 at 921.172 kb on - strand, within Xcc-8004.969.1 at 921.192 kb on + strand, within Xcc-8004.969.1 at 921.192 kb on + strand, within Xcc-8004.969.1 at 921.325 kb on - strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.333 kb on + strand, within Xcc-8004.969.1 at 921.334 kb on - strand, within Xcc-8004.969.1 at 921.334 kb on - strand, within Xcc-8004.969.1 at 921.334 kb on - strand, within Xcc-8004.969.1 at 921.453 kb on + strand, within Xcc-8004.969.1 at 921.453 kb on + strand, within Xcc-8004.969.1 at 921.454 kb on - strand, within Xcc-8004.969.1 at 921.454 kb on - strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.516 kb on + strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.517 kb on - strand, within Xcc-8004.969.1 at 921.627 kb on + strand, within Xcc-8004.969.1 at 921.628 kb on - strand, within Xcc-8004.969.1 at 921.628 kb on - strand, within Xcc-8004.969.1 at 921.628 kb on - strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.654 kb on + strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.655 kb on - strand, within Xcc-8004.969.1 at 921.785 kb on + strand at 921.785 kb on + strand at 921.785 kb on + strand at 921.935 kb on + strand at 921.935 kb on + strand at 921.993 kb on + strand, within Xcc-8004.970.1 at 921.994 kb on - strand, within Xcc-8004.970.1 at 922.038 kb on - strand, within Xcc-8004.970.1 at 922.038 kb on - strand, within Xcc-8004.970.1 at 922.061 kb on + strand, within Xcc-8004.970.1 at 922.197 kb on - strand, within Xcc-8004.970.1 at 922.277 kb on + strand, within Xcc-8004.970.1 at 922.350 kb on + strand, within Xcc-8004.970.1 at 922.395 kb on - strand, within Xcc-8004.970.1 at 922.424 kb on + strand, within Xcc-8004.970.1 at 922.424 kb on + strand, within Xcc-8004.970.1 at 922.425 kb on - strand, within Xcc-8004.970.1 at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.662 kb on - strand at 922.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 920,175 - -0.3 920,175 - +0.4 920,175 - -0.4 920,175 - +0.4 920,274 + Xcc-8004.968.1 0.10 -1.2 920,274 + Xcc-8004.968.1 0.10 +0.4 920,274 + Xcc-8004.968.1 0.10 +1.3 920,274 + Xcc-8004.968.1 0.10 -2.8 920,274 + Xcc-8004.968.1 0.10 +0.6 920,274 + Xcc-8004.968.1 0.10 +1.6 920,274 + Xcc-8004.968.1 0.10 +2.3 920,274 + Xcc-8004.968.1 0.10 -0.2 920,275 - Xcc-8004.968.1 0.10 -0.6 920,275 - Xcc-8004.968.1 0.10 +1.4 920,275 - Xcc-8004.968.1 0.10 +1.3 920,406 + Xcc-8004.968.1 0.26 +1.0 920,406 + Xcc-8004.968.1 0.26 -0.3 920,406 + Xcc-8004.968.1 0.26 +3.0 920,406 + Xcc-8004.968.1 0.26 +1.1 920,407 - Xcc-8004.968.1 0.27 -0.6 920,407 - Xcc-8004.968.1 0.27 -0.9 920,407 - Xcc-8004.968.1 0.27 +0.6 920,407 - Xcc-8004.968.1 0.27 +0.1 920,415 + Xcc-8004.968.1 0.27 +1.9 920,415 + Xcc-8004.968.1 0.27 +1.7 920,490 + Xcc-8004.968.1 0.37 +1.8 920,490 + Xcc-8004.968.1 0.37 +1.5 920,490 + Xcc-8004.968.1 0.37 +1.0 920,490 + Xcc-8004.968.1 0.37 +0.9 920,491 - Xcc-8004.968.1 0.37 -0.4 920,491 - Xcc-8004.968.1 0.37 +0.2 920,538 + Xcc-8004.968.1 0.42 +0.2 920,538 + Xcc-8004.968.1 0.42 +1.8 920,539 - Xcc-8004.968.1 0.43 -0.2 920,553 + Xcc-8004.968.1 0.44 +1.3 920,553 + Xcc-8004.968.1 0.44 +1.3 920,553 + Xcc-8004.968.1 0.44 +1.8 920,553 + Xcc-8004.968.1 0.44 +0.6 920,554 - Xcc-8004.968.1 0.44 +0.7 920,554 - Xcc-8004.968.1 0.44 +1.5 920,554 - Xcc-8004.968.1 0.44 +0.4 920,554 - Xcc-8004.968.1 0.44 -0.0 920,554 - Xcc-8004.968.1 0.44 +0.1 920,554 - Xcc-8004.968.1 0.44 +1.0 920,589 + Xcc-8004.968.1 0.49 +2.4 920,590 - Xcc-8004.968.1 0.49 -0.6 920,590 - Xcc-8004.968.1 0.49 -0.4 920,670 + Xcc-8004.968.1 0.59 +2.6 920,671 - Xcc-8004.968.1 0.59 +0.9 920,671 - Xcc-8004.968.1 0.59 -0.1 920,671 - Xcc-8004.968.1 0.59 +0.8 920,715 + Xcc-8004.968.1 0.64 +1.5 921,096 + +0.2 921,144 + -1.4 921,145 - +1.3 921,171 + Xcc-8004.969.1 0.10 -1.0 921,171 + Xcc-8004.969.1 0.10 +1.5 921,172 - Xcc-8004.969.1 0.10 +1.3 921,172 - Xcc-8004.969.1 0.10 -2.2 921,172 - Xcc-8004.969.1 0.10 +0.2 921,192 + Xcc-8004.969.1 0.14 +0.1 921,192 + Xcc-8004.969.1 0.14 +0.8 921,325 - Xcc-8004.969.1 0.34 -1.3 921,333 + Xcc-8004.969.1 0.35 -0.7 921,333 + Xcc-8004.969.1 0.35 -1.3 921,333 + Xcc-8004.969.1 0.35 -1.7 921,333 + Xcc-8004.969.1 0.35 -0.1 921,333 + Xcc-8004.969.1 0.35 +1.1 921,333 + Xcc-8004.969.1 0.35 -0.3 921,333 + Xcc-8004.969.1 0.35 +1.2 921,334 - Xcc-8004.969.1 0.35 +1.7 921,334 - Xcc-8004.969.1 0.35 +1.4 921,334 - Xcc-8004.969.1 0.35 +1.6 921,453 + Xcc-8004.969.1 0.54 -2.5 921,453 + Xcc-8004.969.1 0.54 +0.3 921,454 - Xcc-8004.969.1 0.54 +0.2 921,454 - Xcc-8004.969.1 0.54 +1.3 921,516 + Xcc-8004.969.1 0.63 +0.9 921,516 + Xcc-8004.969.1 0.63 +1.3 921,516 + Xcc-8004.969.1 0.63 +1.1 921,516 + Xcc-8004.969.1 0.63 +1.4 921,516 + Xcc-8004.969.1 0.63 -0.4 921,516 + Xcc-8004.969.1 0.63 -1.5 921,517 - Xcc-8004.969.1 0.63 -0.1 921,517 - Xcc-8004.969.1 0.63 -0.2 921,517 - Xcc-8004.969.1 0.63 -2.3 921,517 - Xcc-8004.969.1 0.63 +0.4 921,517 - Xcc-8004.969.1 0.63 -0.2 921,517 - Xcc-8004.969.1 0.63 +0.2 921,517 - Xcc-8004.969.1 0.63 +1.7 921,517 - Xcc-8004.969.1 0.63 -0.5 921,517 - Xcc-8004.969.1 0.63 -0.7 921,627 + Xcc-8004.969.1 0.80 +1.1 921,628 - Xcc-8004.969.1 0.80 -1.1 921,628 - Xcc-8004.969.1 0.80 +0.0 921,628 - Xcc-8004.969.1 0.80 -1.5 921,654 + Xcc-8004.969.1 0.84 -0.5 921,654 + Xcc-8004.969.1 0.84 +2.1 921,654 + Xcc-8004.969.1 0.84 -1.8 921,654 + Xcc-8004.969.1 0.84 +1.2 921,654 + Xcc-8004.969.1 0.84 +0.6 921,654 + Xcc-8004.969.1 0.84 +2.4 921,654 + Xcc-8004.969.1 0.84 +0.5 921,654 + Xcc-8004.969.1 0.84 -0.4 921,654 + Xcc-8004.969.1 0.84 +0.0 921,654 + Xcc-8004.969.1 0.84 -1.8 921,654 + Xcc-8004.969.1 0.84 -1.3 921,655 - Xcc-8004.969.1 0.85 +0.8 921,655 - Xcc-8004.969.1 0.85 +0.7 921,655 - Xcc-8004.969.1 0.85 -2.5 921,655 - Xcc-8004.969.1 0.85 -0.7 921,655 - Xcc-8004.969.1 0.85 -1.7 921,655 - Xcc-8004.969.1 0.85 -0.5 921,655 - Xcc-8004.969.1 0.85 -1.9 921,655 - Xcc-8004.969.1 0.85 +1.0 921,655 - Xcc-8004.969.1 0.85 -0.9 921,655 - Xcc-8004.969.1 0.85 +0.2 921,785 + -0.7 921,785 + +0.9 921,785 + -0.1 921,935 + +1.0 921,935 + -1.2 921,993 + Xcc-8004.970.1 0.17 -1.2 921,994 - Xcc-8004.970.1 0.17 +0.3 922,038 - Xcc-8004.970.1 0.22 -1.7 922,038 - Xcc-8004.970.1 0.22 -1.5 922,061 + Xcc-8004.970.1 0.25 -0.9 922,197 - Xcc-8004.970.1 0.42 +0.8 922,277 + Xcc-8004.970.1 0.52 -0.7 922,350 + Xcc-8004.970.1 0.62 -1.2 922,395 - Xcc-8004.970.1 0.67 -1.1 922,424 + Xcc-8004.970.1 0.71 -1.6 922,424 + Xcc-8004.970.1 0.71 -0.7 922,425 - Xcc-8004.970.1 0.71 -2.1 922,662 - -2.0 922,662 - +0.7 922,662 - -1.4 922,662 - -0.5 922,662 - -0.3 922,662 - -0.0 922,662 - +0.6 922,672 - -2.8
Or see this region's nucleotide sequence