Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.644.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.642.1 and Xcc-8004.643.1 are separated by 126 nucleotidesXcc-8004.643.1 and Xcc-8004.644.1 are separated by 3 nucleotidesXcc-8004.644.1 and Xcc-8004.645.1 are separated by 79 nucleotidesXcc-8004.645.1 and Xcc-8004.646.1 are separated by 76 nucleotides Xcc-8004.642.1: Xcc-8004.642.1 - FIG034602: Probable transmembrane protein, at 587,136 to 587,762 Xcc-8004.642.1 Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626 Xcc-8004.643.1 Xcc-8004.644.1: Xcc-8004.644.1 - Integral membrane protein CcmA involved in cell shape determination, at 588,630 to 589,082 Xcc-8004.644.1 Xcc-8004.645.1: Xcc-8004.645.1 - probable iron binding protein from the HesB_IscA_SufA family, at 589,162 to 589,548 Xcc-8004.645.1 Xcc-8004.646.1: Xcc-8004.646.1 - NADH pyrophosphatase (EC 3.6.1.22), at 589,625 to 590,524 Xcc-8004.646.1 Position (kb) 588 589 590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.792 kb on + strandat 587.793 kb on - strandat 587.793 kb on - strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.898 kb on - strandat 587.898 kb on - strandat 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.474 kb on + strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.487 kb on - strand, within Xcc-8004.643.1at 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.675 kb on - strandat 588.675 kb on - strandat 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.930 kb on + strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 589.167 kb on + strandat 589.167 kb on + strandat 589.207 kb on + strand, within Xcc-8004.645.1at 589.725 kb on + strand, within Xcc-8004.646.1at 589.725 kb on + strand, within Xcc-8004.646.1at 589.726 kb on - strand, within Xcc-8004.646.1at 589.726 kb on - strand, within Xcc-8004.646.1at 589.826 kb on - strand, within Xcc-8004.646.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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587,698 + Xcc-8004.642.1 0.90 +1.5
587,698 + Xcc-8004.642.1 0.90 -1.6
587,698 + Xcc-8004.642.1 0.90 +0.2
587,698 + Xcc-8004.642.1 0.90 +1.9
587,699 - Xcc-8004.642.1 0.90 -0.1
587,699 - Xcc-8004.642.1 0.90 -1.4
587,699 - Xcc-8004.642.1 0.90 -1.0
587,699 - Xcc-8004.642.1 0.90 -0.5
587,699 - Xcc-8004.642.1 0.90 +1.1
587,699 - Xcc-8004.642.1 0.90 -0.9
587,699 - Xcc-8004.642.1 0.90 +0.8
587,699 - Xcc-8004.642.1 0.90 -0.4
587,792 + -0.5
587,793 - +0.8
587,793 - -0.1
587,848 + +0.3
587,848 + +0.1
587,848 + +0.1
587,849 - +0.9
587,849 - +0.0
587,849 - +3.0
587,897 + +0.7
587,897 + -1.9
587,897 + -2.0
587,898 - -0.3
587,898 - +0.8
588,229 + Xcc-8004.643.1 0.46 +0.6
588,229 + Xcc-8004.643.1 0.46 -0.3
588,229 + Xcc-8004.643.1 0.46 -1.0
588,229 + Xcc-8004.643.1 0.46 -0.7
588,229 + Xcc-8004.643.1 0.46 +0.3
588,229 + Xcc-8004.643.1 0.46 +1.6
588,230 - Xcc-8004.643.1 0.46 -1.9
588,230 - Xcc-8004.643.1 0.46 -0.5
588,230 - Xcc-8004.643.1 0.46 -0.4
588,237 + Xcc-8004.643.1 0.47 -0.3
588,237 + Xcc-8004.643.1 0.47 +0.2
588,237 + Xcc-8004.643.1 0.47 +0.5
588,237 + Xcc-8004.643.1 0.47 -1.9
588,237 + Xcc-8004.643.1 0.47 -1.0
588,238 - Xcc-8004.643.1 0.47 -1.0
588,238 - Xcc-8004.643.1 0.47 +2.7
588,238 - Xcc-8004.643.1 0.47 -0.5
588,238 - Xcc-8004.643.1 0.47 +0.2
588,238 - Xcc-8004.643.1 0.47 -1.8
588,238 - Xcc-8004.643.1 0.47 -0.6
588,238 - Xcc-8004.643.1 0.47 -0.8
588,238 - Xcc-8004.643.1 0.47 +1.1
588,238 - Xcc-8004.643.1 0.47 +0.2
588,238 - Xcc-8004.643.1 0.47 +2.1
588,327 + Xcc-8004.643.1 0.59 +1.0
588,327 + Xcc-8004.643.1 0.59 +0.4
588,327 + Xcc-8004.643.1 0.59 +3.5
588,327 + Xcc-8004.643.1 0.59 +2.1
588,327 + Xcc-8004.643.1 0.59 +0.9
588,327 + Xcc-8004.643.1 0.59 -0.2
588,327 + Xcc-8004.643.1 0.59 -0.5
588,327 + Xcc-8004.643.1 0.59 +0.2
588,328 - Xcc-8004.643.1 0.59 +0.4
588,328 - Xcc-8004.643.1 0.59 +0.5
588,328 - Xcc-8004.643.1 0.59 +1.2
588,328 - Xcc-8004.643.1 0.59 -2.0
588,328 - Xcc-8004.643.1 0.59 -2.6
588,328 - Xcc-8004.643.1 0.59 -1.4
588,328 - Xcc-8004.643.1 0.59 +0.4
588,474 + Xcc-8004.643.1 0.79 -1.0
588,475 - Xcc-8004.643.1 0.79 +1.4
588,475 - Xcc-8004.643.1 0.79 -0.0
588,475 - Xcc-8004.643.1 0.79 -0.9
588,487 - Xcc-8004.643.1 0.81 -0.3
588,624 + -2.3
588,624 + -0.6
588,624 + -1.6
588,624 + +0.8
588,624 + +0.1
588,624 + -0.9
588,624 + +0.2
588,625 - -0.5
588,625 - -0.3
588,625 - -1.1
588,625 - +0.1
588,625 - -0.0
588,625 - +2.3
588,625 - -0.1
588,675 - -0.8
588,675 - -1.0
588,732 + Xcc-8004.644.1 0.23 -0.9
588,732 + Xcc-8004.644.1 0.23 +0.8
588,732 + Xcc-8004.644.1 0.23 +0.4
588,732 + Xcc-8004.644.1 0.23 -0.8
588,732 + Xcc-8004.644.1 0.23 -1.6
588,732 + Xcc-8004.644.1 0.23 +1.5
588,732 + Xcc-8004.644.1 0.23 -2.1
588,732 + Xcc-8004.644.1 0.23 -2.5
588,732 + Xcc-8004.644.1 0.23 -0.2
588,732 + Xcc-8004.644.1 0.23 -1.8
588,732 + Xcc-8004.644.1 0.23 +1.2
588,732 + Xcc-8004.644.1 0.23 -1.6
588,732 + Xcc-8004.644.1 0.23 +0.1
588,732 + Xcc-8004.644.1 0.23 +0.9
588,733 - Xcc-8004.644.1 0.23 -1.4
588,733 - Xcc-8004.644.1 0.23 -2.9
588,733 - Xcc-8004.644.1 0.23 +0.2
588,733 - Xcc-8004.644.1 0.23 -0.1
588,733 - Xcc-8004.644.1 0.23 -3.2
588,733 - Xcc-8004.644.1 0.23 +0.5
588,733 - Xcc-8004.644.1 0.23 -2.1
588,733 - Xcc-8004.644.1 0.23 -0.2
588,733 - Xcc-8004.644.1 0.23 -0.8
588,733 - Xcc-8004.644.1 0.23 -1.1
588,733 - Xcc-8004.644.1 0.23 +0.5
588,733 - Xcc-8004.644.1 0.23 +0.4
588,733 - Xcc-8004.644.1 0.23 -0.5
588,733 - Xcc-8004.644.1 0.23 -0.9
588,930 + Xcc-8004.644.1 0.66 +2.8
588,931 - Xcc-8004.644.1 0.66 -0.3
588,931 - Xcc-8004.644.1 0.66 -1.8
588,931 - Xcc-8004.644.1 0.66 +0.0
589,167 + -1.2
589,167 + +0.1
589,207 + Xcc-8004.645.1 0.12 -1.4
589,725 + Xcc-8004.646.1 0.11 -0.5
589,725 + Xcc-8004.646.1 0.11 -2.2
589,726 - Xcc-8004.646.1 0.11 +0.6
589,726 - Xcc-8004.646.1 0.11 +0.2
589,826 - Xcc-8004.646.1 0.22 +1.5

Or see this region's nucleotide sequence