Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4650.1 and Xcc-8004.4651.1 are separated by 753 nucleotides Xcc-8004.4651.1 and Xcc-8004.4652.1 are separated by 167 nucleotides
Xcc-8004.4650.1: Xcc-8004.4650.1 - Metallopeptidase, at 4,429,409 to 4,431,514
Xcc-8004.4650.1
Xcc-8004.4651.1: Xcc-8004.4651.1 - FIG01212773: hypothetical protein, at 4,432,268 to 4,433,266
Xcc-8004.4651.1
Xcc-8004.4652.1: Xcc-8004.4652.1 - FIG01210787: hypothetical protein, at 4,433,434 to 4,434,123
Xcc-8004.4652.1
Position (kb) 4432
4433
4434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4431.298 kb on + strand, within Xcc-8004.4650.1 at 4431.298 kb on + strand, within Xcc-8004.4650.1 at 4431.299 kb on - strand, within Xcc-8004.4650.1 at 4431.350 kb on + strand at 4431.350 kb on + strand at 4431.350 kb on + strand at 4431.351 kb on - strand at 4431.351 kb on - strand at 4431.479 kb on + strand at 4431.480 kb on - strand at 4431.546 kb on + strand at 4431.546 kb on + strand at 4431.546 kb on + strand at 4431.586 kb on + strand at 4431.587 kb on - strand at 4431.627 kb on + strand at 4431.670 kb on + strand at 4431.671 kb on - strand at 4431.690 kb on + strand at 4431.729 kb on + strand at 4431.729 kb on + strand at 4431.729 kb on + strand at 4431.729 kb on + strand at 4431.729 kb on + strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.730 kb on - strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.735 kb on + strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.736 kb on - strand at 4431.778 kb on - strand at 4431.804 kb on - strand at 4431.804 kb on - strand at 4431.804 kb on - strand at 4431.806 kb on + strand at 4431.806 kb on + strand at 4431.806 kb on + strand at 4431.806 kb on + strand at 4431.806 kb on + strand at 4431.807 kb on - strand at 4431.807 kb on - strand at 4431.807 kb on - strand at 4431.807 kb on - strand at 4431.807 kb on - strand at 4431.830 kb on + strand at 4431.886 kb on - strand at 4431.926 kb on + strand at 4431.997 kb on + strand at 4431.998 kb on - strand at 4432.054 kb on - strand at 4432.064 kb on + strand at 4432.064 kb on + strand at 4432.064 kb on + strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.065 kb on - strand at 4432.208 kb on + strand at 4432.209 kb on - strand at 4432.252 kb on + strand at 4432.253 kb on - strand at 4432.269 kb on + strand at 4432.269 kb on + strand at 4432.269 kb on + strand at 4432.269 kb on + strand at 4432.269 kb on + strand at 4432.270 kb on - strand at 4432.270 kb on - strand at 4432.270 kb on - strand at 4432.397 kb on + strand, within Xcc-8004.4651.1 at 4432.398 kb on - strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.430 kb on + strand, within Xcc-8004.4651.1 at 4432.431 kb on - strand, within Xcc-8004.4651.1 at 4432.431 kb on - strand, within Xcc-8004.4651.1 at 4432.431 kb on - strand, within Xcc-8004.4651.1 at 4432.496 kb on + strand, within Xcc-8004.4651.1 at 4432.496 kb on + strand, within Xcc-8004.4651.1 at 4432.497 kb on - strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.583 kb on + strand, within Xcc-8004.4651.1 at 4432.584 kb on - strand, within Xcc-8004.4651.1 at 4432.584 kb on - strand, within Xcc-8004.4651.1 at 4432.584 kb on - strand, within Xcc-8004.4651.1 at 4432.608 kb on + strand, within Xcc-8004.4651.1 at 4432.609 kb on - strand, within Xcc-8004.4651.1 at 4432.609 kb on - strand, within Xcc-8004.4651.1 at 4432.637 kb on + strand, within Xcc-8004.4651.1 at 4432.638 kb on - strand, within Xcc-8004.4651.1 at 4432.638 kb on - strand, within Xcc-8004.4651.1 at 4432.683 kb on + strand, within Xcc-8004.4651.1 at 4432.683 kb on + strand, within Xcc-8004.4651.1 at 4432.683 kb on + strand, within Xcc-8004.4651.1 at 4432.684 kb on - strand, within Xcc-8004.4651.1 at 4432.684 kb on - strand, within Xcc-8004.4651.1 at 4432.684 kb on - strand, within Xcc-8004.4651.1 at 4432.686 kb on + strand, within Xcc-8004.4651.1 at 4432.686 kb on + strand, within Xcc-8004.4651.1 at 4432.749 kb on + strand, within Xcc-8004.4651.1 at 4432.750 kb on - strand, within Xcc-8004.4651.1 at 4432.750 kb on - strand, within Xcc-8004.4651.1 at 4432.890 kb on + strand, within Xcc-8004.4651.1 at 4432.890 kb on + strand, within Xcc-8004.4651.1 at 4432.890 kb on + strand, within Xcc-8004.4651.1 at 4432.890 kb on + strand, within Xcc-8004.4651.1 at 4432.890 kb on + strand, within Xcc-8004.4651.1 at 4432.891 kb on - strand, within Xcc-8004.4651.1 at 4432.891 kb on - strand, within Xcc-8004.4651.1 at 4432.891 kb on - strand, within Xcc-8004.4651.1 at 4432.965 kb on + strand, within Xcc-8004.4651.1 at 4432.965 kb on + strand, within Xcc-8004.4651.1 at 4432.965 kb on + strand, within Xcc-8004.4651.1 at 4432.966 kb on - strand, within Xcc-8004.4651.1 at 4432.966 kb on - strand, within Xcc-8004.4651.1 at 4433.015 kb on + strand, within Xcc-8004.4651.1 at 4433.109 kb on + strand, within Xcc-8004.4651.1 at 4433.188 kb on + strand at 4433.188 kb on + strand at 4433.218 kb on + strand at 4433.218 kb on + strand at 4433.218 kb on + strand at 4433.218 kb on + strand at 4433.219 kb on - strand at 4433.271 kb on + strand at 4433.272 kb on - strand at 4433.272 kb on - strand at 4433.364 kb on + strand at 4433.364 kb on + strand at 4433.364 kb on + strand at 4433.365 kb on - strand at 4433.365 kb on - strand at 4433.365 kb on - strand at 4433.375 kb on - strand at 4433.456 kb on + strand at 4433.456 kb on + strand at 4433.457 kb on - strand at 4433.457 kb on - strand at 4433.462 kb on + strand at 4433.462 kb on + strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.498 kb on + strand at 4433.498 kb on + strand at 4433.758 kb on + strand, within Xcc-8004.4652.1 at 4433.759 kb on - strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.977 kb on + strand, within Xcc-8004.4652.1 at 4433.978 kb on - strand, within Xcc-8004.4652.1 at 4434.059 kb on - strand at 4434.145 kb on - strand at 4434.145 kb on - strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,431,298 + Xcc-8004.4650.1 0.90 -2.6 4,431,298 + Xcc-8004.4650.1 0.90 +1.5 4,431,299 - Xcc-8004.4650.1 0.90 +0.5 4,431,350 + +1.1 4,431,350 + +0.2 4,431,350 + +1.1 4,431,351 - -2.4 4,431,351 - +1.0 4,431,479 + -0.2 4,431,480 - +0.1 4,431,546 + -0.3 4,431,546 + +0.3 4,431,546 + +0.1 4,431,586 + +1.2 4,431,587 - -0.4 4,431,627 + -0.6 4,431,670 + +0.6 4,431,671 - +1.4 4,431,690 + -0.3 4,431,729 + -0.5 4,431,729 + +0.4 4,431,729 + +1.5 4,431,729 + +0.3 4,431,729 + +0.2 4,431,730 - -1.1 4,431,730 - -0.2 4,431,730 - +0.9 4,431,730 - -0.3 4,431,730 - -0.6 4,431,730 - +0.7 4,431,730 - +0.1 4,431,730 - +0.1 4,431,730 - -0.7 4,431,730 - -3.0 4,431,730 - -0.8 4,431,735 + -0.2 4,431,735 + +0.3 4,431,735 + +0.8 4,431,735 + +0.7 4,431,735 + +1.1 4,431,735 + +0.7 4,431,735 + +0.1 4,431,736 - -0.8 4,431,736 - -0.8 4,431,736 - +0.3 4,431,736 - -2.2 4,431,736 - +2.1 4,431,736 - -0.1 4,431,736 - -0.8 4,431,736 - +1.5 4,431,778 - -1.4 4,431,804 - +0.3 4,431,804 - +1.3 4,431,804 - +0.5 4,431,806 + +1.4 4,431,806 + +0.6 4,431,806 + -1.3 4,431,806 + +1.6 4,431,806 + -0.2 4,431,807 - -0.5 4,431,807 - -0.2 4,431,807 - -2.0 4,431,807 - +1.5 4,431,807 - -0.8 4,431,830 + +1.5 4,431,886 - -1.2 4,431,926 + -0.3 4,431,997 + +2.2 4,431,998 - +0.6 4,432,054 - +0.6 4,432,064 + -0.3 4,432,064 + -0.6 4,432,064 + +1.7 4,432,065 - -0.3 4,432,065 - +1.4 4,432,065 - -1.8 4,432,065 - +0.3 4,432,065 - +0.1 4,432,065 - +1.0 4,432,065 - -0.5 4,432,065 - +0.1 4,432,208 + -1.0 4,432,209 - +0.1 4,432,252 + -0.3 4,432,253 - +1.0 4,432,269 + +1.8 4,432,269 + +3.1 4,432,269 + -1.5 4,432,269 + -0.4 4,432,269 + -2.4 4,432,270 - +0.6 4,432,270 - -0.1 4,432,270 - +1.0 4,432,397 + Xcc-8004.4651.1 0.13 -0.1 4,432,398 - Xcc-8004.4651.1 0.13 -1.4 4,432,430 + Xcc-8004.4651.1 0.16 -0.3 4,432,430 + Xcc-8004.4651.1 0.16 +1.3 4,432,430 + Xcc-8004.4651.1 0.16 +0.6 4,432,430 + Xcc-8004.4651.1 0.16 +1.6 4,432,430 + Xcc-8004.4651.1 0.16 -0.3 4,432,430 + Xcc-8004.4651.1 0.16 -1.1 4,432,430 + Xcc-8004.4651.1 0.16 -0.2 4,432,431 - Xcc-8004.4651.1 0.16 -1.2 4,432,431 - Xcc-8004.4651.1 0.16 +1.2 4,432,431 - Xcc-8004.4651.1 0.16 +1.3 4,432,496 + Xcc-8004.4651.1 0.23 -0.9 4,432,496 + Xcc-8004.4651.1 0.23 +0.9 4,432,497 - Xcc-8004.4651.1 0.23 +0.1 4,432,583 + Xcc-8004.4651.1 0.32 +0.5 4,432,583 + Xcc-8004.4651.1 0.32 +0.8 4,432,583 + Xcc-8004.4651.1 0.32 +0.3 4,432,583 + Xcc-8004.4651.1 0.32 -0.0 4,432,583 + Xcc-8004.4651.1 0.32 +0.3 4,432,583 + Xcc-8004.4651.1 0.32 +2.1 4,432,584 - Xcc-8004.4651.1 0.32 +1.7 4,432,584 - Xcc-8004.4651.1 0.32 +0.8 4,432,584 - Xcc-8004.4651.1 0.32 -1.1 4,432,608 + Xcc-8004.4651.1 0.34 -0.1 4,432,609 - Xcc-8004.4651.1 0.34 -0.7 4,432,609 - Xcc-8004.4651.1 0.34 -1.3 4,432,637 + Xcc-8004.4651.1 0.37 -1.9 4,432,638 - Xcc-8004.4651.1 0.37 -0.2 4,432,638 - Xcc-8004.4651.1 0.37 -1.4 4,432,683 + Xcc-8004.4651.1 0.42 +0.4 4,432,683 + Xcc-8004.4651.1 0.42 -1.6 4,432,683 + Xcc-8004.4651.1 0.42 +0.9 4,432,684 - Xcc-8004.4651.1 0.42 +2.0 4,432,684 - Xcc-8004.4651.1 0.42 +0.9 4,432,684 - Xcc-8004.4651.1 0.42 +0.5 4,432,686 + Xcc-8004.4651.1 0.42 -1.0 4,432,686 + Xcc-8004.4651.1 0.42 -0.0 4,432,749 + Xcc-8004.4651.1 0.48 +0.2 4,432,750 - Xcc-8004.4651.1 0.48 -2.6 4,432,750 - Xcc-8004.4651.1 0.48 -2.4 4,432,890 + Xcc-8004.4651.1 0.62 -3.6 4,432,890 + Xcc-8004.4651.1 0.62 +1.1 4,432,890 + Xcc-8004.4651.1 0.62 +0.8 4,432,890 + Xcc-8004.4651.1 0.62 -1.4 4,432,890 + Xcc-8004.4651.1 0.62 -0.7 4,432,891 - Xcc-8004.4651.1 0.62 -0.5 4,432,891 - Xcc-8004.4651.1 0.62 +0.1 4,432,891 - Xcc-8004.4651.1 0.62 -0.1 4,432,965 + Xcc-8004.4651.1 0.70 +0.8 4,432,965 + Xcc-8004.4651.1 0.70 -1.9 4,432,965 + Xcc-8004.4651.1 0.70 +0.8 4,432,966 - Xcc-8004.4651.1 0.70 +1.0 4,432,966 - Xcc-8004.4651.1 0.70 -2.5 4,433,015 + Xcc-8004.4651.1 0.75 +1.1 4,433,109 + Xcc-8004.4651.1 0.84 +0.4 4,433,188 + -0.9 4,433,188 + -0.9 4,433,218 + -3.5 4,433,218 + -0.3 4,433,218 + -2.6 4,433,218 + -0.1 4,433,219 - +0.7 4,433,271 + -0.1 4,433,272 - -0.7 4,433,272 - -0.0 4,433,364 + -2.5 4,433,364 + +0.2 4,433,364 + -1.4 4,433,365 - +0.9 4,433,365 - +0.4 4,433,365 - +0.7 4,433,375 - -1.9 4,433,456 + -0.9 4,433,456 + +1.6 4,433,457 - -0.4 4,433,457 - +0.0 4,433,462 + -0.4 4,433,462 + +0.6 4,433,463 - -1.0 4,433,463 - -0.3 4,433,463 - -0.7 4,433,463 - +0.9 4,433,463 - +0.0 4,433,498 + +0.5 4,433,498 + -0.9 4,433,758 + Xcc-8004.4652.1 0.47 -0.1 4,433,759 - Xcc-8004.4652.1 0.47 +0.0 4,433,827 + Xcc-8004.4652.1 0.57 +0.4 4,433,827 + Xcc-8004.4652.1 0.57 +1.0 4,433,827 + Xcc-8004.4652.1 0.57 -0.8 4,433,828 - Xcc-8004.4652.1 0.57 -1.3 4,433,828 - Xcc-8004.4652.1 0.57 +0.5 4,433,828 - Xcc-8004.4652.1 0.57 -0.6 4,433,828 - Xcc-8004.4652.1 0.57 +0.5 4,433,977 + Xcc-8004.4652.1 0.79 +0.2 4,433,978 - Xcc-8004.4652.1 0.79 -0.6 4,434,059 - +0.7 4,434,145 - +0.4 4,434,145 - +1.7 4,434,152 + -0.1 4,434,152 + -0.5 4,434,152 + +1.2 4,434,152 + +0.5 4,434,152 + -0.6 4,434,152 + +0.7 4,434,152 + +2.0 4,434,152 + -1.3 4,434,152 + -0.6 4,434,152 + -0.4 4,434,152 + -0.2 4,434,153 - +0.1 4,434,153 - -0.2 4,434,153 - +0.3 4,434,153 - +1.7 4,434,153 - +0.7 4,434,153 - -1.0 4,434,153 - +0.8
Or see this region's nucleotide sequence