Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4373.1 and Xcc-8004.4374.1 are separated by 4 nucleotides Xcc-8004.4374.1 and Xcc-8004.4375.1 are separated by 16 nucleotides Xcc-8004.4375.1 and Xcc-8004.4376.1 overlap by 4 nucleotides
Xcc-8004.4373.1: Xcc-8004.4373.1 - LppC putative lipoprotein, at 4,183,658 to 4,185,388
Xcc-8004.4373.1
Xcc-8004.4374.1: Xcc-8004.4374.1 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 4,185,393 to 4,185,761
Xcc-8004.4374.1
Xcc-8004.4375.1: Xcc-8004.4375.1 - Putative membrane-bound metal-dependent hydrolases, at 4,185,778 to 4,186,317
Xcc-8004.4375.1
Xcc-8004.4376.1: Xcc-8004.4376.1 - D-2-hydroxyglutarate dehydrogenase, at 4,186,314 to 4,187,708
Xcc-8004.4376.1
Position (kb) 4185
4186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4184.393 kb on + strand, within Xcc-8004.4373.1 at 4184.487 kb on - strand, within Xcc-8004.4373.1 at 4184.489 kb on + strand, within Xcc-8004.4373.1 at 4184.489 kb on + strand, within Xcc-8004.4373.1 at 4184.490 kb on - strand, within Xcc-8004.4373.1 at 4184.565 kb on - strand, within Xcc-8004.4373.1 at 4184.594 kb on + strand, within Xcc-8004.4373.1 at 4184.762 kb on + strand, within Xcc-8004.4373.1 at 4184.763 kb on - strand, within Xcc-8004.4373.1 at 4184.933 kb on + strand, within Xcc-8004.4373.1 at 4185.102 kb on - strand, within Xcc-8004.4373.1 at 4185.240 kb on - strand at 4185.493 kb on - strand, within Xcc-8004.4374.1 at 4185.608 kb on + strand, within Xcc-8004.4374.1 at 4185.626 kb on - strand, within Xcc-8004.4374.1 at 4186.046 kb on + strand, within Xcc-8004.4375.1 at 4186.047 kb on - strand, within Xcc-8004.4375.1 at 4186.047 kb on - strand, within Xcc-8004.4375.1 at 4186.200 kb on + strand, within Xcc-8004.4375.1 at 4186.201 kb on - strand, within Xcc-8004.4375.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,184,393 + Xcc-8004.4373.1 0.42 -1.5 4,184,487 - Xcc-8004.4373.1 0.48 +1.1 4,184,489 + Xcc-8004.4373.1 0.48 -0.9 4,184,489 + Xcc-8004.4373.1 0.48 +1.1 4,184,490 - Xcc-8004.4373.1 0.48 +0.1 4,184,565 - Xcc-8004.4373.1 0.52 +2.1 4,184,594 + Xcc-8004.4373.1 0.54 +2.3 4,184,762 + Xcc-8004.4373.1 0.64 +0.5 4,184,763 - Xcc-8004.4373.1 0.64 +0.7 4,184,933 + Xcc-8004.4373.1 0.74 -1.4 4,185,102 - Xcc-8004.4373.1 0.83 +0.6 4,185,240 - +0.6 4,185,493 - Xcc-8004.4374.1 0.27 -3.1 4,185,608 + Xcc-8004.4374.1 0.58 -0.9 4,185,626 - Xcc-8004.4374.1 0.63 -0.5 4,186,046 + Xcc-8004.4375.1 0.50 +0.5 4,186,047 - Xcc-8004.4375.1 0.50 +0.2 4,186,047 - Xcc-8004.4375.1 0.50 -0.2 4,186,200 + Xcc-8004.4375.1 0.78 +1.3 4,186,201 - Xcc-8004.4375.1 0.78 -1.0
Or see this region's nucleotide sequence