Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4247.1 and Xcc-8004.4248.1 are separated by 33 nucleotides Xcc-8004.4248.1 and Xcc-8004.4249.1 are separated by 86 nucleotides Xcc-8004.4249.1 and Xcc-8004.4250.1 overlap by 70 nucleotides Xcc-8004.4250.1 and Xcc-8004.4251.1 are separated by 15 nucleotides Xcc-8004.4251.1 and Xcc-8004.4252.1 are separated by 59 nucleotides
Xcc-8004.4247.1: Xcc-8004.4247.1 - Transcriptional regulator, MarR family, at 4,069,963 to 4,070,433
Xcc-8004.4247.1
Xcc-8004.4248.1: Xcc-8004.4248.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 4,070,467 to 4,071,294
Xcc-8004.4248.1
Xcc-8004.4249.1: Xcc-8004.4249.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,071,381 to 4,072,535
Xcc-8004.4249.1
Xcc-8004.4250.1: Xcc-8004.4250.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,072,466 to 4,072,849
Xcc-8004.4250.1
Xcc-8004.4251.1: Xcc-8004.4251.1 - hypothetical protein, at 4,072,865 to 4,073,011
Xcc-8004.4251.1
Xcc-8004.4252.1: Xcc-8004.4252.1 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 4,073,071 to 4,074,543
Xcc-8004.4252.1
Position (kb) 4071
4072
4073 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4070.439 kb on + strand at 4070.440 kb on - strand at 4070.454 kb on + strand at 4070.454 kb on + strand at 4070.455 kb on - strand at 4070.644 kb on - strand, within Xcc-8004.4248.1 at 4070.678 kb on - strand, within Xcc-8004.4248.1 at 4070.737 kb on + strand, within Xcc-8004.4248.1 at 4070.738 kb on - strand, within Xcc-8004.4248.1 at 4071.052 kb on - strand, within Xcc-8004.4248.1 at 4071.142 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.161 kb on - strand, within Xcc-8004.4248.1 at 4071.247 kb on + strand at 4071.436 kb on + strand at 4071.437 kb on - strand at 4071.437 kb on - strand at 4071.523 kb on - strand, within Xcc-8004.4249.1 at 4071.757 kb on - strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.897 kb on + strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.972 kb on + strand, within Xcc-8004.4249.1 at 4071.972 kb on + strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.974 kb on + strand, within Xcc-8004.4249.1 at 4071.975 kb on - strand, within Xcc-8004.4249.1 at 4072.285 kb on + strand, within Xcc-8004.4249.1 at 4072.326 kb on + strand, within Xcc-8004.4249.1 at 4072.326 kb on + strand, within Xcc-8004.4249.1 at 4072.327 kb on - strand, within Xcc-8004.4249.1 at 4072.428 kb on + strand at 4072.429 kb on - strand at 4072.596 kb on - strand, within Xcc-8004.4250.1 at 4072.662 kb on - strand, within Xcc-8004.4250.1 at 4072.980 kb on + strand, within Xcc-8004.4251.1 at 4072.992 kb on + strand, within Xcc-8004.4251.1 at 4072.993 kb on - strand, within Xcc-8004.4251.1 at 4072.993 kb on - strand, within Xcc-8004.4251.1 at 4073.159 kb on - strand at 4073.305 kb on + strand, within Xcc-8004.4252.1 at 4073.305 kb on + strand, within Xcc-8004.4252.1 at 4073.306 kb on - strand, within Xcc-8004.4252.1 at 4073.306 kb on - strand, within Xcc-8004.4252.1 at 4073.306 kb on - strand, within Xcc-8004.4252.1 at 4073.473 kb on + strand, within Xcc-8004.4252.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,070,439 + -0.6 4,070,440 - +2.3 4,070,454 + +0.3 4,070,454 + -0.5 4,070,455 - +0.6 4,070,644 - Xcc-8004.4248.1 0.21 -0.4 4,070,678 - Xcc-8004.4248.1 0.25 +0.0 4,070,737 + Xcc-8004.4248.1 0.33 +0.4 4,070,738 - Xcc-8004.4248.1 0.33 +1.4 4,071,052 - Xcc-8004.4248.1 0.71 +0.4 4,071,142 + Xcc-8004.4248.1 0.82 -0.1 4,071,160 + Xcc-8004.4248.1 0.84 +0.7 4,071,160 + Xcc-8004.4248.1 0.84 -0.6 4,071,161 - Xcc-8004.4248.1 0.84 -1.8 4,071,247 + -0.0 4,071,436 + -1.1 4,071,437 - -1.4 4,071,437 - -0.2 4,071,523 - Xcc-8004.4249.1 0.12 +0.2 4,071,757 - Xcc-8004.4249.1 0.33 +1.0 4,071,759 + Xcc-8004.4249.1 0.33 +0.5 4,071,759 + Xcc-8004.4249.1 0.33 -1.9 4,071,759 + Xcc-8004.4249.1 0.33 +0.4 4,071,759 + Xcc-8004.4249.1 0.33 +1.3 4,071,897 + Xcc-8004.4249.1 0.45 +0.6 4,071,898 - Xcc-8004.4249.1 0.45 +2.2 4,071,898 - Xcc-8004.4249.1 0.45 -1.2 4,071,898 - Xcc-8004.4249.1 0.45 +0.3 4,071,972 + Xcc-8004.4249.1 0.51 +4.2 4,071,972 + Xcc-8004.4249.1 0.51 -0.2 4,071,973 - Xcc-8004.4249.1 0.51 -1.1 4,071,973 - Xcc-8004.4249.1 0.51 +1.5 4,071,973 - Xcc-8004.4249.1 0.51 +0.3 4,071,973 - Xcc-8004.4249.1 0.51 -0.1 4,071,973 - Xcc-8004.4249.1 0.51 -0.0 4,071,973 - Xcc-8004.4249.1 0.51 +0.2 4,071,974 + Xcc-8004.4249.1 0.51 +0.6 4,071,975 - Xcc-8004.4249.1 0.51 -1.3 4,072,285 + Xcc-8004.4249.1 0.78 +2.6 4,072,326 + Xcc-8004.4249.1 0.82 -0.8 4,072,326 + Xcc-8004.4249.1 0.82 +1.3 4,072,327 - Xcc-8004.4249.1 0.82 -1.6 4,072,428 + +0.2 4,072,429 - +1.9 4,072,596 - Xcc-8004.4250.1 0.34 +0.4 4,072,662 - Xcc-8004.4250.1 0.51 -0.8 4,072,980 + Xcc-8004.4251.1 0.78 +0.0 4,072,992 + Xcc-8004.4251.1 0.86 +2.5 4,072,993 - Xcc-8004.4251.1 0.87 -2.9 4,072,993 - Xcc-8004.4251.1 0.87 -0.8 4,073,159 - +0.6 4,073,305 + Xcc-8004.4252.1 0.16 -0.1 4,073,305 + Xcc-8004.4252.1 0.16 +1.7 4,073,306 - Xcc-8004.4252.1 0.16 +1.2 4,073,306 - Xcc-8004.4252.1 0.16 -0.3 4,073,306 - Xcc-8004.4252.1 0.16 -0.4 4,073,473 + Xcc-8004.4252.1 0.27 +0.4
Or see this region's nucleotide sequence