Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3999.1 and Xcc-8004.4000.1 are separated by 96 nucleotides Xcc-8004.4000.1 and Xcc-8004.4001.1 are separated by 111 nucleotides Xcc-8004.4001.1 and Xcc-8004.4002.1 are separated by 7 nucleotides
Xcc-8004.3999.1: Xcc-8004.3999.1 - LSU ribosomal protein L32p, at 3,875,725 to 3,875,919
Xcc-8004.3999.1
Xcc-8004.4000.1: Xcc-8004.4000.1 - COG1399 protein, clustered with ribosomal protein L32p, at 3,876,016 to 3,876,525
Xcc-8004.4000.1
Xcc-8004.4001.1: Xcc-8004.4001.1 - FIG146278: Maf/YceF/YhdE family protein, at 3,876,637 to 3,877,215
Xcc-8004.4001.1
Xcc-8004.4002.1: Xcc-8004.4002.1 - FIG01211730: hypothetical protein, at 3,877,223 to 3,878,842
Xcc-8004.4002.1
Position (kb) 3876
3877
3878 Strain fitness (log2 ratio) -2
-1
0
1 at 3875.682 kb on - strand at 3875.682 kb on - strand at 3875.682 kb on - strand at 3875.682 kb on - strand at 3876.210 kb on - strand, within Xcc-8004.4000.1 at 3876.348 kb on - strand, within Xcc-8004.4000.1 at 3876.348 kb on - strand, within Xcc-8004.4000.1 at 3876.348 kb on - strand, within Xcc-8004.4000.1 at 3876.390 kb on - strand, within Xcc-8004.4000.1 at 3876.446 kb on - strand, within Xcc-8004.4000.1 at 3876.446 kb on - strand, within Xcc-8004.4000.1 at 3876.446 kb on - strand, within Xcc-8004.4000.1 at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.526 kb on - strand at 3876.673 kb on + strand at 3877.048 kb on + strand, within Xcc-8004.4001.1 at 3877.048 kb on + strand, within Xcc-8004.4001.1 at 3877.049 kb on - strand, within Xcc-8004.4001.1 at 3877.049 kb on - strand, within Xcc-8004.4001.1 at 3877.131 kb on + strand, within Xcc-8004.4001.1 at 3877.255 kb on - strand at 3877.323 kb on + strand at 3877.323 kb on + strand at 3877.323 kb on + strand at 3877.323 kb on + strand at 3877.662 kb on + strand, within Xcc-8004.4002.1 at 3877.662 kb on + strand, within Xcc-8004.4002.1 at 3877.663 kb on - strand, within Xcc-8004.4002.1 at 3877.938 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.974 kb on + strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3877.975 kb on - strand, within Xcc-8004.4002.1 at 3878.082 kb on + strand, within Xcc-8004.4002.1 at 3878.082 kb on + strand, within Xcc-8004.4002.1 at 3878.083 kb on - strand, within Xcc-8004.4002.1 at 3878.083 kb on - strand, within Xcc-8004.4002.1 at 3878.083 kb on - strand, within Xcc-8004.4002.1 at 3878.083 kb on - strand, within Xcc-8004.4002.1 at 3878.126 kb on - strand, within Xcc-8004.4002.1 at 3878.126 kb on - strand, within Xcc-8004.4002.1 at 3878.143 kb on + strand, within Xcc-8004.4002.1 at 3878.143 kb on + strand, within Xcc-8004.4002.1 at 3878.144 kb on - strand, within Xcc-8004.4002.1 at 3878.144 kb on - strand, within Xcc-8004.4002.1 at 3878.144 kb on - strand, within Xcc-8004.4002.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,875,682 - -2.4 3,875,682 - -0.9 3,875,682 - +0.5 3,875,682 - -1.2 3,876,210 - Xcc-8004.4000.1 0.38 +0.7 3,876,348 - Xcc-8004.4000.1 0.65 -0.4 3,876,348 - Xcc-8004.4000.1 0.65 -0.9 3,876,348 - Xcc-8004.4000.1 0.65 -0.7 3,876,390 - Xcc-8004.4000.1 0.73 +1.6 3,876,446 - Xcc-8004.4000.1 0.84 -0.4 3,876,446 - Xcc-8004.4000.1 0.84 -0.8 3,876,446 - Xcc-8004.4000.1 0.84 +0.3 3,876,526 - -1.2 3,876,526 - +1.6 3,876,526 - +1.5 3,876,526 - +0.7 3,876,526 - +0.2 3,876,526 - -1.1 3,876,526 - -2.0 3,876,673 + +1.5 3,877,048 + Xcc-8004.4001.1 0.71 +1.6 3,877,048 + Xcc-8004.4001.1 0.71 -1.5 3,877,049 - Xcc-8004.4001.1 0.71 -0.3 3,877,049 - Xcc-8004.4001.1 0.71 -0.4 3,877,131 + Xcc-8004.4001.1 0.85 -0.9 3,877,255 - -1.2 3,877,323 + -0.1 3,877,323 + +0.1 3,877,323 + +0.4 3,877,323 + -0.3 3,877,662 + Xcc-8004.4002.1 0.27 -0.8 3,877,662 + Xcc-8004.4002.1 0.27 -0.5 3,877,663 - Xcc-8004.4002.1 0.27 -0.6 3,877,938 + Xcc-8004.4002.1 0.44 +0.8 3,877,974 + Xcc-8004.4002.1 0.46 -1.7 3,877,974 + Xcc-8004.4002.1 0.46 -1.6 3,877,974 + Xcc-8004.4002.1 0.46 +1.5 3,877,974 + Xcc-8004.4002.1 0.46 +0.9 3,877,974 + Xcc-8004.4002.1 0.46 +0.6 3,877,974 + Xcc-8004.4002.1 0.46 -0.7 3,877,974 + Xcc-8004.4002.1 0.46 +1.0 3,877,974 + Xcc-8004.4002.1 0.46 -1.3 3,877,975 - Xcc-8004.4002.1 0.46 -0.7 3,877,975 - Xcc-8004.4002.1 0.46 -0.9 3,877,975 - Xcc-8004.4002.1 0.46 +1.3 3,877,975 - Xcc-8004.4002.1 0.46 +0.0 3,877,975 - Xcc-8004.4002.1 0.46 +0.6 3,877,975 - Xcc-8004.4002.1 0.46 +0.3 3,878,082 + Xcc-8004.4002.1 0.53 -1.0 3,878,082 + Xcc-8004.4002.1 0.53 -0.3 3,878,083 - Xcc-8004.4002.1 0.53 -1.4 3,878,083 - Xcc-8004.4002.1 0.53 +0.1 3,878,083 - Xcc-8004.4002.1 0.53 -0.7 3,878,083 - Xcc-8004.4002.1 0.53 -0.6 3,878,126 - Xcc-8004.4002.1 0.56 -1.8 3,878,126 - Xcc-8004.4002.1 0.56 -0.6 3,878,143 + Xcc-8004.4002.1 0.57 +1.4 3,878,143 + Xcc-8004.4002.1 0.57 -1.0 3,878,144 - Xcc-8004.4002.1 0.57 -0.6 3,878,144 - Xcc-8004.4002.1 0.57 -0.8 3,878,144 - Xcc-8004.4002.1 0.57 -1.3
Or see this region's nucleotide sequence