Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3976.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3975.1 and Xcc-8004.3976.1 are separated by 254 nucleotidesXcc-8004.3976.1 and Xcc-8004.3977.1 are separated by 93 nucleotidesXcc-8004.3977.1 and Xcc-8004.3978.1 overlap by 4 nucleotidesXcc-8004.3978.1 and Xcc-8004.3979.1 are separated by 2 nucleotides Xcc-8004.3975.1: Xcc-8004.3975.1 - hypothetical protein, at 3,852,255 to 3,854,471 Xcc-8004.3975.1 Xcc-8004.3976.1: Xcc-8004.3976.1 - 2-methylaconitate cis-trans isomerase, at 3,854,726 to 3,855,925 Xcc-8004.3976.1 Xcc-8004.3977.1: Xcc-8004.3977.1 - FIG01214671: hypothetical protein, at 3,856,019 to 3,856,336 Xcc-8004.3977.1 Xcc-8004.3978.1: Xcc-8004.3978.1 - FIG01211989: hypothetical protein, at 3,856,333 to 3,856,659 Xcc-8004.3978.1 Xcc-8004.3979.1: Xcc-8004.3979.1 - 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79), at 3,856,662 to 3,859,256 Xcc-8004.3979.1 Position (kb) 3854 3855 3856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3853.753 kb on + strand, within Xcc-8004.3975.1at 3853.753 kb on + strand, within Xcc-8004.3975.1at 3853.784 kb on + strand, within Xcc-8004.3975.1at 3853.784 kb on + strand, within Xcc-8004.3975.1at 3853.785 kb on - strand, within Xcc-8004.3975.1at 3853.785 kb on - strand, within Xcc-8004.3975.1at 3853.786 kb on + strand, within Xcc-8004.3975.1at 3853.786 kb on + strand, within Xcc-8004.3975.1at 3853.786 kb on + strand, within Xcc-8004.3975.1at 3853.787 kb on - strand, within Xcc-8004.3975.1at 3853.787 kb on - strand, within Xcc-8004.3975.1at 3853.787 kb on - strand, within Xcc-8004.3975.1at 3853.787 kb on - strand, within Xcc-8004.3975.1at 3853.787 kb on - strand, within Xcc-8004.3975.1at 3853.915 kb on + strand, within Xcc-8004.3975.1at 3853.916 kb on - strand, within Xcc-8004.3975.1at 3853.916 kb on - strand, within Xcc-8004.3975.1at 3853.916 kb on - strand, within Xcc-8004.3975.1at 3853.916 kb on - strand, within Xcc-8004.3975.1at 3853.924 kb on + strand, within Xcc-8004.3975.1at 3853.925 kb on - strand, within Xcc-8004.3975.1at 3853.925 kb on - strand, within Xcc-8004.3975.1at 3853.939 kb on + strand, within Xcc-8004.3975.1at 3853.940 kb on - strand, within Xcc-8004.3975.1at 3854.107 kb on + strand, within Xcc-8004.3975.1at 3854.108 kb on - strand, within Xcc-8004.3975.1at 3854.108 kb on - strand, within Xcc-8004.3975.1at 3854.108 kb on - strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.134 kb on + strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.135 kb on - strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.138 kb on + strand, within Xcc-8004.3975.1at 3854.139 kb on - strand, within Xcc-8004.3975.1at 3854.139 kb on - strand, within Xcc-8004.3975.1at 3854.169 kb on - strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.170 kb on + strand, within Xcc-8004.3975.1at 3854.171 kb on - strand, within Xcc-8004.3975.1at 3854.171 kb on - strand, within Xcc-8004.3975.1at 3854.171 kb on - strand, within Xcc-8004.3975.1at 3854.171 kb on - strand, within Xcc-8004.3975.1at 3854.171 kb on - strand, within Xcc-8004.3975.1at 3854.207 kb on + strand, within Xcc-8004.3975.1at 3854.404 kb on + strandat 3854.404 kb on + strandat 3854.405 kb on - strandat 3854.534 kb on - strandat 3854.534 kb on - strandat 3854.534 kb on - strandat 3854.543 kb on + strandat 3854.551 kb on + strandat 3854.551 kb on + strandat 3854.551 kb on + strandat 3854.551 kb on + strandat 3854.551 kb on + strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.552 kb on - strandat 3854.600 kb on - strandat 3854.633 kb on + strandat 3854.633 kb on + strandat 3854.634 kb on - strandat 3855.063 kb on + strand, within Xcc-8004.3976.1at 3855.063 kb on + strand, within Xcc-8004.3976.1at 3855.064 kb on - strand, within Xcc-8004.3976.1at 3855.064 kb on - strand, within Xcc-8004.3976.1at 3855.218 kb on + strand, within Xcc-8004.3976.1at 3855.218 kb on + strand, within Xcc-8004.3976.1at 3855.219 kb on - strand, within Xcc-8004.3976.1at 3855.219 kb on - strand, within Xcc-8004.3976.1at 3855.669 kb on + strand, within Xcc-8004.3976.1at 3855.669 kb on + strand, within Xcc-8004.3976.1at 3855.670 kb on - strand, within Xcc-8004.3976.1at 3855.765 kb on + strand, within Xcc-8004.3976.1at 3855.888 kb on + strandat 3855.889 kb on - strandat 3855.889 kb on - strandat 3856.049 kb on - strandat 3856.104 kb on + strand, within Xcc-8004.3977.1at 3856.105 kb on - strand, within Xcc-8004.3977.1at 3856.116 kb on + strand, within Xcc-8004.3977.1at 3856.180 kb on + strand, within Xcc-8004.3977.1at 3856.181 kb on - strand, within Xcc-8004.3977.1at 3856.181 kb on - strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.276 kb on - strand, within Xcc-8004.3977.1at 3856.484 kb on + strand, within Xcc-8004.3978.1at 3856.485 kb on - strand, within Xcc-8004.3978.1at 3856.485 kb on - strand, within Xcc-8004.3978.1at 3856.502 kb on + strand, within Xcc-8004.3978.1at 3856.502 kb on + strand, within Xcc-8004.3978.1at 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.650 kb on - strandat 3856.660 kb on - strandat 3856.726 kb on + strandat 3856.726 kb on + strandat 3856.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,853,753 + Xcc-8004.3975.1 0.68 +1.8
3,853,753 + Xcc-8004.3975.1 0.68 -2.2
3,853,784 + Xcc-8004.3975.1 0.69 +1.0
3,853,784 + Xcc-8004.3975.1 0.69 -0.1
3,853,785 - Xcc-8004.3975.1 0.69 -0.2
3,853,785 - Xcc-8004.3975.1 0.69 +0.7
3,853,786 + Xcc-8004.3975.1 0.69 -0.4
3,853,786 + Xcc-8004.3975.1 0.69 +0.1
3,853,786 + Xcc-8004.3975.1 0.69 +0.7
3,853,787 - Xcc-8004.3975.1 0.69 -1.4
3,853,787 - Xcc-8004.3975.1 0.69 +1.0
3,853,787 - Xcc-8004.3975.1 0.69 +1.7
3,853,787 - Xcc-8004.3975.1 0.69 -0.2
3,853,787 - Xcc-8004.3975.1 0.69 -0.0
3,853,915 + Xcc-8004.3975.1 0.75 -0.8
3,853,916 - Xcc-8004.3975.1 0.75 -0.4
3,853,916 - Xcc-8004.3975.1 0.75 -0.1
3,853,916 - Xcc-8004.3975.1 0.75 +0.0
3,853,916 - Xcc-8004.3975.1 0.75 -1.9
3,853,924 + Xcc-8004.3975.1 0.75 -0.5
3,853,925 - Xcc-8004.3975.1 0.75 -1.3
3,853,925 - Xcc-8004.3975.1 0.75 -0.3
3,853,939 + Xcc-8004.3975.1 0.76 -1.5
3,853,940 - Xcc-8004.3975.1 0.76 -1.3
3,854,107 + Xcc-8004.3975.1 0.84 +0.4
3,854,108 - Xcc-8004.3975.1 0.84 -0.3
3,854,108 - Xcc-8004.3975.1 0.84 -1.5
3,854,108 - Xcc-8004.3975.1 0.84 -0.3
3,854,134 + Xcc-8004.3975.1 0.85 -1.8
3,854,134 + Xcc-8004.3975.1 0.85 -0.2
3,854,134 + Xcc-8004.3975.1 0.85 +1.2
3,854,134 + Xcc-8004.3975.1 0.85 +0.3
3,854,134 + Xcc-8004.3975.1 0.85 -0.2
3,854,134 + Xcc-8004.3975.1 0.85 +1.2
3,854,134 + Xcc-8004.3975.1 0.85 -3.0
3,854,134 + Xcc-8004.3975.1 0.85 -0.4
3,854,134 + Xcc-8004.3975.1 0.85 -2.0
3,854,134 + Xcc-8004.3975.1 0.85 +0.4
3,854,134 + Xcc-8004.3975.1 0.85 -3.0
3,854,134 + Xcc-8004.3975.1 0.85 -0.4
3,854,135 - Xcc-8004.3975.1 0.85 +0.0
3,854,135 - Xcc-8004.3975.1 0.85 -2.1
3,854,135 - Xcc-8004.3975.1 0.85 -1.2
3,854,135 - Xcc-8004.3975.1 0.85 -0.7
3,854,135 - Xcc-8004.3975.1 0.85 -0.5
3,854,135 - Xcc-8004.3975.1 0.85 -0.9
3,854,135 - Xcc-8004.3975.1 0.85 -2.7
3,854,138 + Xcc-8004.3975.1 0.85 +0.4
3,854,138 + Xcc-8004.3975.1 0.85 -0.1
3,854,138 + Xcc-8004.3975.1 0.85 -0.6
3,854,138 + Xcc-8004.3975.1 0.85 -0.9
3,854,138 + Xcc-8004.3975.1 0.85 +0.0
3,854,138 + Xcc-8004.3975.1 0.85 -1.4
3,854,139 - Xcc-8004.3975.1 0.85 -1.4
3,854,139 - Xcc-8004.3975.1 0.85 -0.3
3,854,169 - Xcc-8004.3975.1 0.86 +0.4
3,854,170 + Xcc-8004.3975.1 0.86 -0.9
3,854,170 + Xcc-8004.3975.1 0.86 -0.7
3,854,170 + Xcc-8004.3975.1 0.86 -2.0
3,854,170 + Xcc-8004.3975.1 0.86 +0.1
3,854,170 + Xcc-8004.3975.1 0.86 -1.9
3,854,170 + Xcc-8004.3975.1 0.86 -0.3
3,854,170 + Xcc-8004.3975.1 0.86 -0.9
3,854,170 + Xcc-8004.3975.1 0.86 +0.3
3,854,171 - Xcc-8004.3975.1 0.86 +0.6
3,854,171 - Xcc-8004.3975.1 0.86 -0.6
3,854,171 - Xcc-8004.3975.1 0.86 +0.5
3,854,171 - Xcc-8004.3975.1 0.86 +0.1
3,854,171 - Xcc-8004.3975.1 0.86 -0.3
3,854,207 + Xcc-8004.3975.1 0.88 +1.6
3,854,404 + -2.0
3,854,404 + -0.4
3,854,405 - +2.0
3,854,534 - -1.9
3,854,534 - +1.0
3,854,534 - +0.3
3,854,543 + -0.4
3,854,551 + -1.0
3,854,551 + -0.2
3,854,551 + +2.4
3,854,551 + +0.8
3,854,551 + -0.5
3,854,552 - +1.2
3,854,552 - -0.9
3,854,552 - -1.4
3,854,552 - +0.2
3,854,552 - +0.1
3,854,552 - +1.4
3,854,552 - -2.0
3,854,552 - -1.6
3,854,600 - +0.8
3,854,633 + -1.4
3,854,633 + +0.3
3,854,634 - -0.3
3,855,063 + Xcc-8004.3976.1 0.28 -2.5
3,855,063 + Xcc-8004.3976.1 0.28 -2.7
3,855,064 - Xcc-8004.3976.1 0.28 -2.4
3,855,064 - Xcc-8004.3976.1 0.28 -1.3
3,855,218 + Xcc-8004.3976.1 0.41 -2.0
3,855,218 + Xcc-8004.3976.1 0.41 +1.1
3,855,219 - Xcc-8004.3976.1 0.41 -0.3
3,855,219 - Xcc-8004.3976.1 0.41 -1.3
3,855,669 + Xcc-8004.3976.1 0.79 -0.9
3,855,669 + Xcc-8004.3976.1 0.79 -3.5
3,855,670 - Xcc-8004.3976.1 0.79 -3.1
3,855,765 + Xcc-8004.3976.1 0.87 -0.9
3,855,888 + -1.6
3,855,889 - -0.6
3,855,889 - +1.9
3,856,049 - +0.1
3,856,104 + Xcc-8004.3977.1 0.27 +1.0
3,856,105 - Xcc-8004.3977.1 0.27 +1.1
3,856,116 + Xcc-8004.3977.1 0.31 -1.1
3,856,180 + Xcc-8004.3977.1 0.51 -0.7
3,856,181 - Xcc-8004.3977.1 0.51 -0.1
3,856,181 - Xcc-8004.3977.1 0.51 +0.6
3,856,237 + Xcc-8004.3977.1 0.69 +0.8
3,856,237 + Xcc-8004.3977.1 0.69 -0.0
3,856,237 + Xcc-8004.3977.1 0.69 -0.3
3,856,238 - Xcc-8004.3977.1 0.69 +1.6
3,856,238 - Xcc-8004.3977.1 0.69 +0.4
3,856,238 - Xcc-8004.3977.1 0.69 +1.4
3,856,238 - Xcc-8004.3977.1 0.69 +0.5
3,856,276 - Xcc-8004.3977.1 0.81 +0.4
3,856,484 + Xcc-8004.3978.1 0.46 -1.0
3,856,485 - Xcc-8004.3978.1 0.46 -0.5
3,856,485 - Xcc-8004.3978.1 0.46 +0.5
3,856,502 + Xcc-8004.3978.1 0.52 -0.2
3,856,502 + Xcc-8004.3978.1 0.52 -1.3
3,856,649 + -0.2
3,856,649 + +0.9
3,856,649 + -0.0
3,856,649 + -1.8
3,856,650 - +0.3
3,856,660 - -1.9
3,856,726 + -0.2
3,856,726 + -1.7
3,856,726 + +3.6

Or see this region's nucleotide sequence