Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3888.1 and Xcc-8004.3889.1 are separated by 254 nucleotides Xcc-8004.3889.1 and Xcc-8004.3891.1 are separated by 204 nucleotides Xcc-8004.3891.1 and Xcc-8004.3892.1 are separated by 469 nucleotides
Xcc-8004.3888.1: Xcc-8004.3888.1 - FIG01210089: hypothetical protein, at 3,755,065 to 3,755,574
Xcc-8004.3888.1
Xcc-8004.3889.1: Xcc-8004.3889.1 - FIG01210587: hypothetical protein, at 3,755,829 to 3,756,233
Xcc-8004.3889.1
Xcc-8004.3891.1: Xcc-8004.3891.1 - alanyl dipeptidyl peptidase, at 3,756,438 to 3,758,555
Xcc-8004.3891.1
Xcc-8004.3892.1: Xcc-8004.3892.1 - FIG01209946: hypothetical protein, at 3,759,025 to 3,760,047
Xcc-8004.3892.1
Position (kb) 3756
3757
3758
3759 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3755.548 kb on + strand at 3755.549 kb on - strand at 3755.674 kb on + strand at 3755.674 kb on + strand at 3755.675 kb on - strand at 3755.709 kb on + strand at 3755.710 kb on - strand at 3755.813 kb on - strand at 3755.853 kb on + strand at 3755.853 kb on + strand at 3755.854 kb on - strand at 3755.854 kb on - strand at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.106 kb on + strand, within Xcc-8004.3889.1 at 3756.107 kb on - strand, within Xcc-8004.3889.1 at 3756.114 kb on + strand, within Xcc-8004.3889.1 at 3756.160 kb on - strand, within Xcc-8004.3889.1 at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.242 kb on - strand at 3756.535 kb on + strand at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.755 kb on - strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.845 kb on - strand, within Xcc-8004.3891.1 at 3757.030 kb on + strand, within Xcc-8004.3891.1 at 3757.031 kb on - strand, within Xcc-8004.3891.1 at 3757.046 kb on - strand, within Xcc-8004.3891.1 at 3757.127 kb on - strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.150 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.166 kb on - strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.325 kb on + strand, within Xcc-8004.3891.1 at 3757.326 kb on - strand, within Xcc-8004.3891.1 at 3757.326 kb on - strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.607 kb on - strand, within Xcc-8004.3891.1 at 3757.609 kb on + strand, within Xcc-8004.3891.1 at 3757.609 kb on + strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.849 kb on + strand, within Xcc-8004.3891.1 at 3757.849 kb on + strand, within Xcc-8004.3891.1 at 3757.991 kb on + strand, within Xcc-8004.3891.1 at 3757.992 kb on - strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.149 kb on + strand, within Xcc-8004.3891.1 at 3758.149 kb on + strand, within Xcc-8004.3891.1 at 3758.150 kb on - strand, within Xcc-8004.3891.1 at 3758.216 kb on - strand, within Xcc-8004.3891.1 at 3758.216 kb on - strand, within Xcc-8004.3891.1 at 3758.251 kb on + strand, within Xcc-8004.3891.1 at 3758.251 kb on + strand, within Xcc-8004.3891.1 at 3758.252 kb on - strand, within Xcc-8004.3891.1 at 3758.252 kb on - strand, within Xcc-8004.3891.1 at 3758.409 kb on + strand at 3758.409 kb on + strand at 3758.410 kb on - strand at 3758.410 kb on - strand at 3758.432 kb on + strand at 3758.432 kb on + strand at 3758.432 kb on + strand at 3758.433 kb on - strand at 3758.543 kb on + strand at 3758.544 kb on - strand at 3758.588 kb on - strand at 3758.588 kb on - strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.820 kb on + strand at 3758.821 kb on - strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.920 kb on - strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.128 kb on + strand, within Xcc-8004.3892.1 at 3759.128 kb on + strand, within Xcc-8004.3892.1 at 3759.129 kb on - strand, within Xcc-8004.3892.1 at 3759.152 kb on + strand, within Xcc-8004.3892.1 at 3759.153 kb on - strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.507 kb on + strand, within Xcc-8004.3892.1 at 3759.508 kb on - strand, within Xcc-8004.3892.1 at 3759.508 kb on - strand, within Xcc-8004.3892.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,755,548 + +1.2 3,755,549 - -1.4 3,755,674 + +0.2 3,755,674 + +0.3 3,755,675 - +1.1 3,755,709 + +1.4 3,755,710 - +0.6 3,755,813 - -0.5 3,755,853 + -0.1 3,755,853 + +0.8 3,755,854 - +0.1 3,755,854 - -1.4 3,756,102 + Xcc-8004.3889.1 0.67 -0.1 3,756,102 + Xcc-8004.3889.1 0.67 +2.1 3,756,103 - Xcc-8004.3889.1 0.68 -1.5 3,756,103 - Xcc-8004.3889.1 0.68 +1.8 3,756,103 - Xcc-8004.3889.1 0.68 -1.2 3,756,106 + Xcc-8004.3889.1 0.68 -0.8 3,756,107 - Xcc-8004.3889.1 0.69 -0.1 3,756,114 + Xcc-8004.3889.1 0.70 +0.8 3,756,160 - Xcc-8004.3889.1 0.82 +1.1 3,756,232 - +0.4 3,756,232 - +0.2 3,756,232 - +0.6 3,756,232 - +0.8 3,756,242 - -0.1 3,756,535 + -2.1 3,756,685 + Xcc-8004.3891.1 0.12 -0.1 3,756,685 + Xcc-8004.3891.1 0.12 -0.1 3,756,754 + Xcc-8004.3891.1 0.15 +0.1 3,756,754 + Xcc-8004.3891.1 0.15 -2.6 3,756,755 - Xcc-8004.3891.1 0.15 -0.4 3,756,835 + Xcc-8004.3891.1 0.19 +0.7 3,756,835 + Xcc-8004.3891.1 0.19 +0.2 3,756,835 + Xcc-8004.3891.1 0.19 -0.7 3,756,844 + Xcc-8004.3891.1 0.19 -1.3 3,756,844 + Xcc-8004.3891.1 0.19 +0.5 3,756,845 - Xcc-8004.3891.1 0.19 +0.1 3,757,030 + Xcc-8004.3891.1 0.28 -0.2 3,757,031 - Xcc-8004.3891.1 0.28 +0.8 3,757,046 - Xcc-8004.3891.1 0.29 -1.1 3,757,127 - Xcc-8004.3891.1 0.33 +0.5 3,757,144 + Xcc-8004.3891.1 0.33 -0.5 3,757,144 + Xcc-8004.3891.1 0.33 +0.4 3,757,144 + Xcc-8004.3891.1 0.33 +0.3 3,757,144 + Xcc-8004.3891.1 0.33 +0.3 3,757,144 + Xcc-8004.3891.1 0.33 +1.5 3,757,144 + Xcc-8004.3891.1 0.33 -0.6 3,757,144 + Xcc-8004.3891.1 0.33 -0.3 3,757,145 - Xcc-8004.3891.1 0.33 -0.1 3,757,145 - Xcc-8004.3891.1 0.33 +0.3 3,757,145 - Xcc-8004.3891.1 0.33 +0.2 3,757,145 - Xcc-8004.3891.1 0.33 +0.2 3,757,150 + Xcc-8004.3891.1 0.34 +0.6 3,757,165 + Xcc-8004.3891.1 0.34 -2.3 3,757,165 + Xcc-8004.3891.1 0.34 +1.6 3,757,166 - Xcc-8004.3891.1 0.34 -0.3 3,757,299 + Xcc-8004.3891.1 0.41 -0.2 3,757,299 + Xcc-8004.3891.1 0.41 -2.5 3,757,299 + Xcc-8004.3891.1 0.41 +0.5 3,757,299 + Xcc-8004.3891.1 0.41 -1.0 3,757,299 + Xcc-8004.3891.1 0.41 -2.1 3,757,299 + Xcc-8004.3891.1 0.41 -0.0 3,757,300 - Xcc-8004.3891.1 0.41 +0.3 3,757,300 - Xcc-8004.3891.1 0.41 -0.7 3,757,300 - Xcc-8004.3891.1 0.41 +0.0 3,757,300 - Xcc-8004.3891.1 0.41 +3.8 3,757,300 - Xcc-8004.3891.1 0.41 +0.9 3,757,325 + Xcc-8004.3891.1 0.42 +0.6 3,757,326 - Xcc-8004.3891.1 0.42 -2.0 3,757,326 - Xcc-8004.3891.1 0.42 +2.5 3,757,459 + Xcc-8004.3891.1 0.48 +0.4 3,757,459 + Xcc-8004.3891.1 0.48 -0.4 3,757,459 + Xcc-8004.3891.1 0.48 -1.0 3,757,460 - Xcc-8004.3891.1 0.48 +0.3 3,757,460 - Xcc-8004.3891.1 0.48 -1.3 3,757,460 - Xcc-8004.3891.1 0.48 +0.3 3,757,607 - Xcc-8004.3891.1 0.55 -0.5 3,757,609 + Xcc-8004.3891.1 0.55 +0.1 3,757,609 + Xcc-8004.3891.1 0.55 -0.7 3,757,610 - Xcc-8004.3891.1 0.55 -2.3 3,757,610 - Xcc-8004.3891.1 0.55 +0.4 3,757,610 - Xcc-8004.3891.1 0.55 -0.2 3,757,849 + Xcc-8004.3891.1 0.67 -0.2 3,757,849 + Xcc-8004.3891.1 0.67 -0.7 3,757,991 + Xcc-8004.3891.1 0.73 +0.3 3,757,992 - Xcc-8004.3891.1 0.73 -0.4 3,758,020 + Xcc-8004.3891.1 0.75 -0.3 3,758,020 + Xcc-8004.3891.1 0.75 -0.9 3,758,020 + Xcc-8004.3891.1 0.75 -1.1 3,758,020 + Xcc-8004.3891.1 0.75 +0.1 3,758,149 + Xcc-8004.3891.1 0.81 +0.1 3,758,149 + Xcc-8004.3891.1 0.81 -0.7 3,758,150 - Xcc-8004.3891.1 0.81 +0.6 3,758,216 - Xcc-8004.3891.1 0.84 -1.0 3,758,216 - Xcc-8004.3891.1 0.84 -1.1 3,758,251 + Xcc-8004.3891.1 0.86 -0.1 3,758,251 + Xcc-8004.3891.1 0.86 -1.3 3,758,252 - Xcc-8004.3891.1 0.86 +1.0 3,758,252 - Xcc-8004.3891.1 0.86 +1.3 3,758,409 + -1.4 3,758,409 + -1.8 3,758,410 - +0.1 3,758,410 - -1.2 3,758,432 + -0.9 3,758,432 + -2.1 3,758,432 + -0.7 3,758,433 - +0.7 3,758,543 + -1.0 3,758,544 - -0.3 3,758,588 - +1.5 3,758,588 - -1.1 3,758,722 + -0.0 3,758,722 + -1.4 3,758,722 + +0.4 3,758,722 + -0.0 3,758,722 + +0.7 3,758,722 + -2.4 3,758,722 + -1.3 3,758,722 + +0.1 3,758,722 + +0.8 3,758,722 + -0.6 3,758,722 + -1.6 3,758,723 - -1.4 3,758,723 - +0.4 3,758,723 - +0.3 3,758,723 - -0.2 3,758,723 - -0.6 3,758,723 - -2.1 3,758,723 - +0.3 3,758,723 - +2.6 3,758,723 - -0.0 3,758,723 - -0.3 3,758,820 + -0.3 3,758,821 - +0.4 3,758,919 + +2.1 3,758,919 + -0.8 3,758,919 + +0.6 3,758,919 + +2.9 3,758,920 - +0.1 3,759,050 + -0.2 3,759,050 + -1.8 3,759,050 + +1.4 3,759,050 + +0.5 3,759,050 + +1.1 3,759,050 + +0.9 3,759,050 + +0.8 3,759,050 + -0.7 3,759,050 + +0.5 3,759,050 + -1.4 3,759,050 + -1.8 3,759,050 + -0.4 3,759,051 - -0.0 3,759,051 - -1.4 3,759,051 - -0.3 3,759,051 - -0.4 3,759,051 - -2.6 3,759,128 + Xcc-8004.3892.1 0.10 -1.1 3,759,128 + Xcc-8004.3892.1 0.10 +0.7 3,759,129 - Xcc-8004.3892.1 0.10 +1.2 3,759,152 + Xcc-8004.3892.1 0.12 +1.0 3,759,153 - Xcc-8004.3892.1 0.13 -0.9 3,759,330 + Xcc-8004.3892.1 0.30 -0.8 3,759,330 + Xcc-8004.3892.1 0.30 -1.6 3,759,330 + Xcc-8004.3892.1 0.30 +1.6 3,759,479 + Xcc-8004.3892.1 0.44 +1.3 3,759,479 + Xcc-8004.3892.1 0.44 +2.2 3,759,479 + Xcc-8004.3892.1 0.44 +1.1 3,759,480 - Xcc-8004.3892.1 0.44 +0.3 3,759,480 - Xcc-8004.3892.1 0.44 +0.3 3,759,480 - Xcc-8004.3892.1 0.44 -1.7 3,759,480 - Xcc-8004.3892.1 0.44 -1.4 3,759,480 - Xcc-8004.3892.1 0.44 +0.6 3,759,480 - Xcc-8004.3892.1 0.44 +0.1 3,759,507 + Xcc-8004.3892.1 0.47 +1.0 3,759,508 - Xcc-8004.3892.1 0.47 +0.4 3,759,508 - Xcc-8004.3892.1 0.47 +1.4
Or see this region's nucleotide sequence