Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3129.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3128.1 and Xcc-8004.3127.1 are separated by 185 nucleotidesXcc-8004.3127.1 and Xcc-8004.3129.1 overlap by 4 nucleotidesXcc-8004.3129.1 and Xcc-8004.3130.1 are separated by 18 nucleotidesXcc-8004.3130.1 and Xcc-8004.3131.1 overlap by 4 nucleotides Xcc-8004.3128.1: Xcc-8004.3128.1 - COGs COG3737, at 3,053,869 to 3,054,243 Xcc-8004.3128.1 Xcc-8004.3127.1: Xcc-8004.3127.1 - Lipoprotein NlpD, at 3,054,429 to 3,055,211 Xcc-8004.3127.1 Xcc-8004.3129.1: Xcc-8004.3129.1 - FIG139438: lipoprotein B, at 3,055,208 to 3,055,822 Xcc-8004.3129.1 Xcc-8004.3130.1: Xcc-8004.3130.1 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 3,055,841 to 3,056,518 Xcc-8004.3130.1 Xcc-8004.3131.1: Xcc-8004.3131.1 - hypothetical protein, at 3,056,515 to 3,057,294 Xcc-8004.3131.1 Position (kb) 3055 3056Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3054.233 kb on + strandat 3054.233 kb on + strandat 3054.233 kb on + strandat 3054.234 kb on - strandat 3054.234 kb on - strandat 3054.367 kb on + strandat 3054.372 kb on + strandat 3054.395 kb on - strandat 3054.446 kb on - strandat 3055.162 kb on - strandat 3055.350 kb on + strand, within Xcc-8004.3129.1at 3055.429 kb on + strand, within Xcc-8004.3129.1at 3055.429 kb on + strand, within Xcc-8004.3129.1at 3055.430 kb on - strand, within Xcc-8004.3129.1at 3055.453 kb on + strand, within Xcc-8004.3129.1at 3055.454 kb on - strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.605 kb on + strand, within Xcc-8004.3129.1at 3055.606 kb on - strand, within Xcc-8004.3129.1at 3055.606 kb on - strand, within Xcc-8004.3129.1at 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.800 kb on + strandat 3055.801 kb on - strandat 3055.801 kb on - strandat 3055.814 kb on + strandat 3055.814 kb on + strandat 3055.815 kb on - strandat 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.049 kb on + strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.050 kb on - strand, within Xcc-8004.3130.1at 3056.168 kb on - strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.169 kb on + strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.170 kb on - strand, within Xcc-8004.3130.1at 3056.209 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.338 kb on - strand, within Xcc-8004.3130.1at 3056.420 kb on - strand, within Xcc-8004.3130.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.619 kb on + strand, within Xcc-8004.3131.1at 3056.620 kb on - strand, within Xcc-8004.3131.1at 3056.693 kb on + strand, within Xcc-8004.3131.1at 3056.694 kb on - strand, within Xcc-8004.3131.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,054,233 + +0.1
3,054,233 + -3.6
3,054,233 + +0.7
3,054,234 - -0.8
3,054,234 - +0.3
3,054,367 + -0.7
3,054,372 + +0.3
3,054,395 - +1.7
3,054,446 - +0.4
3,055,162 - +1.1
3,055,350 + Xcc-8004.3129.1 0.23 +0.3
3,055,429 + Xcc-8004.3129.1 0.36 +2.4
3,055,429 + Xcc-8004.3129.1 0.36 -0.5
3,055,430 - Xcc-8004.3129.1 0.36 -0.4
3,055,453 + Xcc-8004.3129.1 0.40 +1.0
3,055,454 - Xcc-8004.3129.1 0.40 +1.3
3,055,605 + Xcc-8004.3129.1 0.65 -1.5
3,055,605 + Xcc-8004.3129.1 0.65 +1.2
3,055,605 + Xcc-8004.3129.1 0.65 +2.8
3,055,605 + Xcc-8004.3129.1 0.65 +1.1
3,055,606 - Xcc-8004.3129.1 0.65 +0.9
3,055,606 - Xcc-8004.3129.1 0.65 -0.3
3,055,800 + +1.1
3,055,800 + -0.9
3,055,800 + +0.8
3,055,800 + +1.5
3,055,801 - -0.2
3,055,801 - -0.7
3,055,814 + +0.7
3,055,814 + +1.2
3,055,815 - +0.2
3,056,049 + Xcc-8004.3130.1 0.31 +0.3
3,056,049 + Xcc-8004.3130.1 0.31 +1.3
3,056,049 + Xcc-8004.3130.1 0.31 +1.4
3,056,049 + Xcc-8004.3130.1 0.31 +2.4
3,056,049 + Xcc-8004.3130.1 0.31 -2.2
3,056,049 + Xcc-8004.3130.1 0.31 +0.8
3,056,049 + Xcc-8004.3130.1 0.31 -0.4
3,056,050 - Xcc-8004.3130.1 0.31 -1.3
3,056,050 - Xcc-8004.3130.1 0.31 +0.4
3,056,050 - Xcc-8004.3130.1 0.31 -1.5
3,056,050 - Xcc-8004.3130.1 0.31 +0.3
3,056,050 - Xcc-8004.3130.1 0.31 +2.3
3,056,050 - Xcc-8004.3130.1 0.31 +1.7
3,056,050 - Xcc-8004.3130.1 0.31 -0.6
3,056,168 - Xcc-8004.3130.1 0.48 +0.7
3,056,169 + Xcc-8004.3130.1 0.48 -0.5
3,056,169 + Xcc-8004.3130.1 0.48 +0.2
3,056,169 + Xcc-8004.3130.1 0.48 +1.8
3,056,169 + Xcc-8004.3130.1 0.48 -1.5
3,056,169 + Xcc-8004.3130.1 0.48 +5.4
3,056,169 + Xcc-8004.3130.1 0.48 -0.5
3,056,169 + Xcc-8004.3130.1 0.48 +1.5
3,056,170 - Xcc-8004.3130.1 0.49 +0.1
3,056,170 - Xcc-8004.3130.1 0.49 +0.1
3,056,170 - Xcc-8004.3130.1 0.49 +0.4
3,056,170 - Xcc-8004.3130.1 0.49 -0.2
3,056,170 - Xcc-8004.3130.1 0.49 +1.9
3,056,209 - Xcc-8004.3130.1 0.54 +1.1
3,056,338 - Xcc-8004.3130.1 0.73 +0.7
3,056,338 - Xcc-8004.3130.1 0.73 -2.1
3,056,338 - Xcc-8004.3130.1 0.73 +0.3
3,056,420 - Xcc-8004.3130.1 0.85 -1.8
3,056,619 + Xcc-8004.3131.1 0.13 +0.1
3,056,619 + Xcc-8004.3131.1 0.13 +2.5
3,056,619 + Xcc-8004.3131.1 0.13 -0.5
3,056,619 + Xcc-8004.3131.1 0.13 +0.7
3,056,620 - Xcc-8004.3131.1 0.13 -1.2
3,056,693 + Xcc-8004.3131.1 0.23 +0.4
3,056,694 - Xcc-8004.3131.1 0.23 -2.1

Or see this region's nucleotide sequence