Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08475

Experiment: H2 N-free with 10mM Gly-D-Asp

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08470 and MMP_RS08475 overlap by 4 nucleotidesMMP_RS08475 and MMP_RS08480 overlap by 10 nucleotidesMMP_RS08480 and MMP_RS08485 are separated by 82 nucleotides MMP_RS08470: MMP_RS08470 - ATP-binding cassette domain-containing protein, at 1,589,977 to 1,591,038 _RS08470 MMP_RS08475: MMP_RS08475 - ABC transporter permease, at 1,591,035 to 1,591,817 _RS08475 MMP_RS08480: MMP_RS08480 - molybdate ABC transporter substrate-binding protein, at 1,591,808 to 1,592,611 _RS08480 MMP_RS08485: MMP_RS08485 - tungstate ABC transporter substrate-binding protein WtpA, at 1,592,694 to 1,593,692 _RS08485 Position (kb) 1591 1592Strain fitness (log2 ratio) -2 -1 0 1at 1590.073 kb on - strandat 1590.202 kb on + strand, within MMP_RS08470at 1590.226 kb on - strand, within MMP_RS08470at 1590.454 kb on + strand, within MMP_RS08470at 1590.592 kb on - strand, within MMP_RS08470at 1590.593 kb on + strand, within MMP_RS08470at 1590.692 kb on + strand, within MMP_RS08470at 1590.812 kb on + strand, within MMP_RS08470at 1590.841 kb on - strand, within MMP_RS08470at 1590.842 kb on + strand, within MMP_RS08470at 1590.842 kb on + strand, within MMP_RS08470at 1590.862 kb on - strand, within MMP_RS08470at 1590.947 kb on + strandat 1590.950 kb on - strandat 1590.951 kb on + strandat 1590.970 kb on - strandat 1591.054 kb on - strandat 1591.093 kb on + strandat 1591.150 kb on - strand, within MMP_RS08475at 1591.177 kb on - strand, within MMP_RS08475at 1591.178 kb on + strand, within MMP_RS08475at 1591.183 kb on - strand, within MMP_RS08475at 1591.286 kb on - strand, within MMP_RS08475at 1591.374 kb on - strand, within MMP_RS08475at 1591.374 kb on - strand, within MMP_RS08475at 1591.374 kb on - strand, within MMP_RS08475at 1591.374 kb on - strand, within MMP_RS08475at 1591.374 kb on - strand, within MMP_RS08475at 1591.375 kb on + strand, within MMP_RS08475at 1591.515 kb on - strand, within MMP_RS08475at 1591.728 kb on - strand, within MMP_RS08475at 1591.729 kb on + strand, within MMP_RS08475at 1591.729 kb on + strand, within MMP_RS08475at 1591.733 kb on - strand, within MMP_RS08475at 1591.755 kb on - strandat 1591.865 kb on - strandat 1591.971 kb on + strand, within MMP_RS08480at 1592.000 kb on + strand, within MMP_RS08480at 1592.050 kb on + strand, within MMP_RS08480at 1592.050 kb on + strand, within MMP_RS08480at 1592.130 kb on + strand, within MMP_RS08480at 1592.131 kb on - strand, within MMP_RS08480at 1592.271 kb on + strand, within MMP_RS08480at 1592.271 kb on + strand, within MMP_RS08480at 1592.291 kb on - strand, within MMP_RS08480at 1592.299 kb on + strand, within MMP_RS08480at 1592.349 kb on + strand, within MMP_RS08480at 1592.403 kb on - strand, within MMP_RS08480at 1592.451 kb on + strand, within MMP_RS08480at 1592.451 kb on + strand, within MMP_RS08480at 1592.461 kb on - strand, within MMP_RS08480at 1592.592 kb on + strandat 1592.636 kb on + strandat 1592.800 kb on + strand, within MMP_RS08485

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Gly-D-Asp
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1,590,073 - +0.2
1,590,202 + MMP_RS08470 0.21 +0.7
1,590,226 - MMP_RS08470 0.23 +1.1
1,590,454 + MMP_RS08470 0.45 -0.7
1,590,592 - MMP_RS08470 0.58 -0.9
1,590,593 + MMP_RS08470 0.58 +0.6
1,590,692 + MMP_RS08470 0.67 -0.2
1,590,812 + MMP_RS08470 0.79 -0.5
1,590,841 - MMP_RS08470 0.81 +1.4
1,590,842 + MMP_RS08470 0.81 -0.7
1,590,842 + MMP_RS08470 0.81 +0.1
1,590,862 - MMP_RS08470 0.83 +0.1
1,590,947 + -0.4
1,590,950 - -0.4
1,590,951 + +0.8
1,590,970 - +1.1
1,591,054 - +0.4
1,591,093 + -0.8
1,591,150 - MMP_RS08475 0.15 +0.7
1,591,177 - MMP_RS08475 0.18 -0.1
1,591,178 + MMP_RS08475 0.18 +0.8
1,591,183 - MMP_RS08475 0.19 -0.5
1,591,286 - MMP_RS08475 0.32 +0.4
1,591,374 - MMP_RS08475 0.43 +0.6
1,591,374 - MMP_RS08475 0.43 -1.8
1,591,374 - MMP_RS08475 0.43 -0.3
1,591,374 - MMP_RS08475 0.43 +0.6
1,591,374 - MMP_RS08475 0.43 +1.0
1,591,375 + MMP_RS08475 0.43 +0.8
1,591,515 - MMP_RS08475 0.61 +1.1
1,591,728 - MMP_RS08475 0.89 +0.8
1,591,729 + MMP_RS08475 0.89 +0.2
1,591,729 + MMP_RS08475 0.89 -2.1
1,591,733 - MMP_RS08475 0.89 -0.1
1,591,755 - +0.1
1,591,865 - +1.0
1,591,971 + MMP_RS08480 0.20 +0.3
1,592,000 + MMP_RS08480 0.24 +1.1
1,592,050 + MMP_RS08480 0.30 +0.6
1,592,050 + MMP_RS08480 0.30 +0.3
1,592,130 + MMP_RS08480 0.40 +0.3
1,592,131 - MMP_RS08480 0.40 +1.2
1,592,271 + MMP_RS08480 0.58 +0.4
1,592,271 + MMP_RS08480 0.58 -0.3
1,592,291 - MMP_RS08480 0.60 -0.3
1,592,299 + MMP_RS08480 0.61 +0.0
1,592,349 + MMP_RS08480 0.67 +0.2
1,592,403 - MMP_RS08480 0.74 -0.1
1,592,451 + MMP_RS08480 0.80 -0.7
1,592,451 + MMP_RS08480 0.80 +0.8
1,592,461 - MMP_RS08480 0.81 +0.2
1,592,592 + +0.8
1,592,636 + +1.3
1,592,800 + MMP_RS08485 0.11 -0.4

Or see this region's nucleotide sequence