Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05740

Experiment: H2 N-free with 10mM Gly-D-Asp

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05735 and MMP_RS05740 overlap by 14 nucleotidesMMP_RS05740 and MMP_RS05745 are separated by 4 nucleotidesMMP_RS05745 and MMP_RS05750 are separated by 60 nucleotides MMP_RS05735: MMP_RS05735 - oligosaccharide repeat unit polymerase family protein, at 1,100,167 to 1,101,342 _RS05735 MMP_RS05740: MMP_RS05740 - oligosaccharide repeat unit polymerase family protein, at 1,101,329 to 1,102,402 _RS05740 MMP_RS05745: MMP_RS05745 - hypothetical protein, at 1,102,407 to 1,103,162 _RS05745 MMP_RS05750: MMP_RS05750 - transketolase family protein, at 1,103,223 to 1,104,161 _RS05750 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -3 -2 -1 0 1at 1100.332 kb on - strandat 1100.894 kb on + strandat 1100.960 kb on - strandat 1100.980 kb on - strandat 1101.022 kb on - strandat 1101.366 kb on - strandat 1101.448 kb on + strandat 1101.617 kb on - strandat 1101.897 kb on - strandat 1102.070 kb on - strandat 1102.071 kb on + strandat 1102.576 kb on + strandat 1102.739 kb on - strandat 1102.740 kb on + strandat 1102.740 kb on + strandat 1102.750 kb on + strandat 1102.787 kb on - strandat 1102.830 kb on + strandat 1102.932 kb on - strandat 1103.115 kb on - strandat 1103.195 kb on - strandat 1103.207 kb on + strandat 1103.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Gly-D-Asp
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1,100,332 - -3.0
1,100,894 + -1.8
1,100,960 - -0.0
1,100,980 - -1.8
1,101,022 - -1.3
1,101,366 - +0.2
1,101,448 + -2.3
1,101,617 - -1.3
1,101,897 - -1.7
1,102,070 - -2.3
1,102,071 + -1.7
1,102,576 + -0.6
1,102,739 - -2.5
1,102,740 + -2.2
1,102,740 + -2.0
1,102,750 + -2.0
1,102,787 - -2.9
1,102,830 + -2.7
1,102,932 - -1.7
1,103,115 - -2.6
1,103,195 - -1.2
1,103,207 + -2.9
1,103,207 + -1.5

Or see this region's nucleotide sequence