Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02720

Experiment: H2 N-free with 10mM Gly-D-Asp

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02715 and MMP_RS02720 are separated by 238 nucleotidesMMP_RS02720 and MMP_RS02725 are separated by 10 nucleotidesMMP_RS02725 and MMP_RS02730 are separated by 123 nucleotides MMP_RS02715: MMP_RS02715 - molybdopterin molybdotransferase MoeA, at 518,774 to 519,895 _RS02715 MMP_RS02720: MMP_RS02720 - molybdate ABC transporter substrate-binding protein, at 520,134 to 520,910 _RS02720 MMP_RS02725: MMP_RS02725 - molybdate ABC transporter permease subunit, at 520,921 to 521,586 _RS02725 MMP_RS02730: MMP_RS02730 - ModD protein, at 521,710 to 522,561 _RS02730 Position (kb) 520 521Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 519.386 kb on - strand, within MMP_RS02715at 519.410 kb on - strand, within MMP_RS02715at 519.468 kb on + strand, within MMP_RS02715at 519.468 kb on + strand, within MMP_RS02715at 519.532 kb on - strand, within MMP_RS02715at 519.593 kb on - strand, within MMP_RS02715at 519.593 kb on - strand, within MMP_RS02715at 519.831 kb on + strandat 519.918 kb on - strandat 519.976 kb on + strandat 520.013 kb on - strandat 520.013 kb on - strandat 520.014 kb on + strandat 520.045 kb on - strandat 520.045 kb on - strandat 520.046 kb on + strandat 520.046 kb on + strandat 520.050 kb on + strandat 520.526 kb on + strand, within MMP_RS02720at 520.678 kb on + strand, within MMP_RS02720at 520.711 kb on - strand, within MMP_RS02720at 520.852 kb on + strandat 520.950 kb on - strandat 520.971 kb on + strandat 521.004 kb on - strand, within MMP_RS02725at 521.004 kb on - strand, within MMP_RS02725at 521.063 kb on - strand, within MMP_RS02725at 521.064 kb on + strand, within MMP_RS02725at 521.096 kb on - strand, within MMP_RS02725at 521.105 kb on - strand, within MMP_RS02725at 521.291 kb on + strand, within MMP_RS02725at 521.369 kb on - strand, within MMP_RS02725at 521.377 kb on + strand, within MMP_RS02725at 521.463 kb on - strand, within MMP_RS02725at 521.511 kb on + strand, within MMP_RS02725at 521.524 kb on + strandat 521.546 kb on - strandat 521.546 kb on - strandat 521.547 kb on + strandat 521.548 kb on - strandat 521.548 kb on - strandat 521.548 kb on - strandat 521.548 kb on - strandat 521.548 kb on - strandat 521.549 kb on + strandat 521.549 kb on + strandat 521.549 kb on + strandat 521.553 kb on + strandat 521.572 kb on + strandat 521.621 kb on + strandat 521.621 kb on + strandat 521.621 kb on + strandat 521.623 kb on + strandat 521.635 kb on - strandat 521.635 kb on - strandat 521.636 kb on + strandat 521.636 kb on + strandat 521.636 kb on + strandat 521.672 kb on - strandat 521.675 kb on - strandat 521.676 kb on + strandat 521.680 kb on + strandat 521.709 kb on - strandat 521.710 kb on + strandat 521.710 kb on + strandat 521.719 kb on - strandat 521.719 kb on - strandat 521.825 kb on + strand, within MMP_RS02730at 521.876 kb on - strand, within MMP_RS02730at 521.876 kb on - strand, within MMP_RS02730at 521.877 kb on + strand, within MMP_RS02730

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Gly-D-Asp
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519,386 - MMP_RS02715 0.55 -0.9
519,410 - MMP_RS02715 0.57 -0.0
519,468 + MMP_RS02715 0.62 -0.1
519,468 + MMP_RS02715 0.62 +0.2
519,532 - MMP_RS02715 0.68 -0.3
519,593 - MMP_RS02715 0.73 -0.6
519,593 - MMP_RS02715 0.73 +0.1
519,831 + -0.4
519,918 - +1.1
519,976 + -0.4
520,013 - +0.1
520,013 - -0.1
520,014 + +0.7
520,045 - +0.9
520,045 - +0.3
520,046 + +0.6
520,046 + -1.5
520,050 + +0.3
520,526 + MMP_RS02720 0.50 +0.8
520,678 + MMP_RS02720 0.70 -0.0
520,711 - MMP_RS02720 0.74 -0.7
520,852 + -0.4
520,950 - +0.6
520,971 + +1.4
521,004 - MMP_RS02725 0.12 +0.3
521,004 - MMP_RS02725 0.12 +0.8
521,063 - MMP_RS02725 0.21 -0.9
521,064 + MMP_RS02725 0.21 -0.5
521,096 - MMP_RS02725 0.26 -1.1
521,105 - MMP_RS02725 0.28 +0.3
521,291 + MMP_RS02725 0.56 -1.4
521,369 - MMP_RS02725 0.67 +0.0
521,377 + MMP_RS02725 0.68 -0.1
521,463 - MMP_RS02725 0.81 +0.8
521,511 + MMP_RS02725 0.89 -0.5
521,524 + +0.2
521,546 - +0.0
521,546 - +0.3
521,547 + +0.5
521,548 - -1.0
521,548 - +0.5
521,548 - -0.6
521,548 - -1.6
521,548 - -0.5
521,549 + -0.0
521,549 + +0.4
521,549 + +0.1
521,553 + +0.7
521,572 + +0.4
521,621 + -1.5
521,621 + -1.3
521,621 + -0.5
521,623 + -0.6
521,635 - -3.0
521,635 - -3.5
521,636 + -1.6
521,636 + -1.8
521,636 + -1.4
521,672 - -2.9
521,675 - -3.7
521,676 + -1.9
521,680 + -0.7
521,709 - -2.7
521,710 + -4.0
521,710 + -2.8
521,719 - -2.7
521,719 - -4.2
521,825 + MMP_RS02730 0.13 -2.8
521,876 - MMP_RS02730 0.19 -2.2
521,876 - MMP_RS02730 0.19 -3.0
521,877 + MMP_RS02730 0.20 -2.5

Or see this region's nucleotide sequence