Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_836 and HP15_837 overlap by 14 nucleotides HP15_837 and HP15_838 are separated by 49 nucleotides HP15_838 and HP15_839 overlap by 11 nucleotides
HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109
_836
HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066
_837
HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051
_838
HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814
_839
Position (kb) 855
856
857
858 Strain fitness (log2 ratio) -1
0
1 at 854.131 kb on - strand at 854.142 kb on + strand at 854.276 kb on + strand at 854.326 kb on + strand at 854.439 kb on + strand, within HP15_836 at 854.467 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.573 kb on - strand, within HP15_836 at 854.590 kb on + strand, within HP15_836 at 854.608 kb on - strand, within HP15_836 at 854.644 kb on - strand, within HP15_836 at 854.646 kb on + strand, within HP15_836 at 854.894 kb on - strand, within HP15_836 at 855.027 kb on - strand at 855.029 kb on + strand at 855.029 kb on + strand at 855.081 kb on + strand at 855.095 kb on - strand at 855.126 kb on + strand at 855.144 kb on + strand at 855.408 kb on - strand, within HP15_837 at 855.450 kb on - strand, within HP15_837 at 855.472 kb on - strand, within HP15_837 at 855.512 kb on - strand, within HP15_837 at 855.594 kb on - strand, within HP15_837 at 855.769 kb on + strand, within HP15_837 at 855.822 kb on + strand, within HP15_837 at 855.831 kb on - strand, within HP15_837 at 855.848 kb on + strand, within HP15_837 at 855.867 kb on + strand, within HP15_837 at 855.872 kb on + strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.966 kb on - strand, within HP15_837 at 855.990 kb on - strand, within HP15_837 at 856.023 kb on + strand, within HP15_837 at 856.031 kb on - strand, within HP15_837 at 856.093 kb on - strand, within HP15_837 at 856.210 kb on - strand, within HP15_837 at 856.230 kb on + strand, within HP15_837 at 856.337 kb on - strand, within HP15_837 at 856.365 kb on + strand, within HP15_837 at 856.365 kb on + strand, within HP15_837 at 856.422 kb on + strand, within HP15_837 at 856.422 kb on + strand, within HP15_837 at 856.427 kb on + strand, within HP15_837 at 856.435 kb on - strand, within HP15_837 at 856.442 kb on - strand, within HP15_837 at 856.517 kb on - strand, within HP15_837 at 856.652 kb on + strand, within HP15_837 at 856.770 kb on + strand, within HP15_837 at 856.820 kb on + strand, within HP15_837 at 856.828 kb on - strand, within HP15_837 at 857.006 kb on + strand at 857.014 kb on - strand at 857.052 kb on - strand at 857.272 kb on + strand, within HP15_838 at 857.279 kb on + strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.384 kb on + strand, within HP15_838 at 857.398 kb on - strand, within HP15_838 at 857.406 kb on + strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.617 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.669 kb on + strand, within HP15_838 at 857.674 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.828 kb on - strand, within HP15_838 at 857.865 kb on + strand, within HP15_838 at 857.908 kb on - strand, within HP15_838 at 857.940 kb on + strand, within HP15_838 at 857.948 kb on - strand, within HP15_838
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 854,131 - +0.8 854,142 + -0.6 854,276 + -0.3 854,326 + +1.1 854,439 + HP15_836 0.18 +0.2 854,467 - HP15_836 0.22 +0.5 854,524 - HP15_836 0.29 +1.1 854,524 - HP15_836 0.29 +0.6 854,573 - HP15_836 0.35 +0.4 854,590 + HP15_836 0.37 +0.4 854,608 - HP15_836 0.39 -0.8 854,644 - HP15_836 0.43 -0.3 854,646 + HP15_836 0.44 -0.5 854,894 - HP15_836 0.74 -0.3 855,027 - +0.9 855,029 + +0.1 855,029 + -0.1 855,081 + +0.1 855,095 - +0.4 855,126 + -0.4 855,144 + +0.9 855,408 - HP15_837 0.16 +1.0 855,450 - HP15_837 0.18 -0.3 855,472 - HP15_837 0.19 +0.1 855,512 - HP15_837 0.21 +0.2 855,594 - HP15_837 0.25 -0.1 855,769 + HP15_837 0.34 +0.3 855,822 + HP15_837 0.37 -0.5 855,831 - HP15_837 0.37 +0.5 855,848 + HP15_837 0.38 +0.1 855,867 + HP15_837 0.39 -0.3 855,872 + HP15_837 0.39 +0.0 855,875 - HP15_837 0.40 +0.4 855,875 - HP15_837 0.40 -0.2 855,875 - HP15_837 0.40 +0.1 855,875 - HP15_837 0.40 +0.4 855,880 - HP15_837 0.40 -0.0 855,880 - HP15_837 0.40 -0.4 855,966 - HP15_837 0.44 +0.2 855,990 - HP15_837 0.45 +0.0 856,023 + HP15_837 0.47 +0.2 856,031 - HP15_837 0.47 -0.4 856,093 - HP15_837 0.51 +0.5 856,210 - HP15_837 0.57 -1.5 856,230 + HP15_837 0.58 -0.1 856,337 - HP15_837 0.63 +0.6 856,365 + HP15_837 0.64 +0.1 856,365 + HP15_837 0.64 +0.4 856,422 + HP15_837 0.67 -0.1 856,422 + HP15_837 0.67 -0.5 856,427 + HP15_837 0.68 +0.6 856,435 - HP15_837 0.68 +0.4 856,442 - HP15_837 0.68 +0.3 856,517 - HP15_837 0.72 -0.1 856,652 + HP15_837 0.79 +0.0 856,770 + HP15_837 0.85 +0.2 856,820 + HP15_837 0.87 +1.0 856,828 - HP15_837 0.88 +0.3 857,006 + +0.2 857,014 - -0.0 857,052 - -1.1 857,272 + HP15_838 0.17 -0.1 857,279 + HP15_838 0.17 +0.2 857,334 - HP15_838 0.23 -1.0 857,334 - HP15_838 0.23 -0.0 857,384 + HP15_838 0.29 -0.1 857,398 - HP15_838 0.30 -0.2 857,406 + HP15_838 0.31 +0.1 857,414 - HP15_838 0.32 +0.7 857,414 - HP15_838 0.32 -0.1 857,414 - HP15_838 0.32 +0.1 857,617 - HP15_838 0.54 +0.1 857,648 - HP15_838 0.57 -1.0 857,648 - HP15_838 0.57 +0.4 857,669 + HP15_838 0.59 -0.3 857,674 + HP15_838 0.60 +0.4 857,697 + HP15_838 0.62 -0.1 857,697 + HP15_838 0.62 +1.1 857,828 - HP15_838 0.76 +0.0 857,865 + HP15_838 0.80 +0.2 857,908 - HP15_838 0.85 +0.0 857,940 + HP15_838 0.88 -0.7 857,948 - HP15_838 0.89 +1.0
Or see this region's nucleotide sequence