Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2511 and HP15_2512 are separated by 15 nucleotides HP15_2512 and HP15_2513 are separated by 7 nucleotides HP15_2513 and HP15_2514 are separated by 90 nucleotides
HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966
_2511
HP15_2512: HP15_2512 - tRNA synthetase, class II (D, K and N), at 2,651,982 to 2,652,950
_2512
HP15_2513: HP15_2513 - translation elongation factor P, at 2,652,958 to 2,653,488
_2513
HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619
_2514
Position (kb)
2651
2652
2653 Strain fitness (log2 ratio)
-1
0
1 at 2651.031 kb on - strand at 2652.003 kb on + strand at 2652.211 kb on + strand, within HP15_2512 at 2652.225 kb on - strand, within HP15_2512 at 2652.345 kb on - strand, within HP15_2512 at 2652.345 kb on - strand, within HP15_2512 at 2652.437 kb on + strand, within HP15_2512 at 2652.569 kb on + strand, within HP15_2512 at 2652.609 kb on - strand, within HP15_2512 at 2652.676 kb on - strand, within HP15_2512 at 2652.735 kb on + strand, within HP15_2512 at 2652.824 kb on + strand, within HP15_2512 at 2652.953 kb on - strand at 2653.661 kb on + strand at 2653.737 kb on - strand, within HP15_2514 at 2653.793 kb on - strand, within HP15_2514
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 2,651,031 - -0.1 2,652,003 + +0.1 2,652,211 + HP15_2512 0.24 -0.3 2,652,225 - HP15_2512 0.25 +0.8 2,652,345 - HP15_2512 0.37 -1.7 2,652,345 - HP15_2512 0.37 -0.7 2,652,437 + HP15_2512 0.47 -0.4 2,652,569 + HP15_2512 0.61 +0.0 2,652,609 - HP15_2512 0.65 -1.0 2,652,676 - HP15_2512 0.72 -0.4 2,652,735 + HP15_2512 0.78 -0.6 2,652,824 + HP15_2512 0.87 +0.0 2,652,953 - -0.3 2,653,661 + -0.4 2,653,737 - HP15_2514 0.15 -0.9 2,653,793 - HP15_2514 0.21 -0.5
Or see this region's nucleotide sequence