Strain Fitness in Marinobacter adhaerens HP15 around HP15_2029

Experiment: m.b. A22 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2027 and HP15_2028 are separated by 74 nucleotidesHP15_2028 and HP15_2029 are separated by 7 nucleotidesHP15_2029 and HP15_2030 are separated by 16 nucleotidesHP15_2030 and HP15_2031 are separated by 203 nucleotides HP15_2027: HP15_2027 - dihydrodipicolinate synthase, at 2,127,830 to 2,128,708 _2027 HP15_2028: HP15_2028 - protein containing alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen domain, at 2,128,783 to 2,129,250 _2028 HP15_2029: HP15_2029 - permease perM, at 2,129,258 to 2,130,337 _2029 HP15_2030: HP15_2030 - protein containing SirA-like domain, at 2,130,354 to 2,130,581 _2030 HP15_2031: HP15_2031 - putative Zn-dependent protease, contains TPR repeats, at 2,130,785 to 2,132,217 _2031 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -2 -1 0 1at 2128.932 kb on - strand, within HP15_2028at 2128.957 kb on - strand, within HP15_2028at 2129.224 kb on + strandat 2129.224 kb on + strandat 2129.327 kb on - strandat 2129.509 kb on - strand, within HP15_2029at 2129.518 kb on + strand, within HP15_2029at 2129.542 kb on - strand, within HP15_2029at 2129.655 kb on - strand, within HP15_2029at 2129.712 kb on + strand, within HP15_2029at 2129.733 kb on - strand, within HP15_2029at 2129.791 kb on + strand, within HP15_2029at 2129.794 kb on - strand, within HP15_2029at 2129.871 kb on + strand, within HP15_2029at 2129.925 kb on - strand, within HP15_2029at 2130.192 kb on - strand, within HP15_2029at 2130.207 kb on + strand, within HP15_2029at 2130.267 kb on + strandat 2130.663 kb on + strandat 2130.747 kb on - strandat 2130.803 kb on - strandat 2131.079 kb on - strand, within HP15_2031at 2131.172 kb on - strand, within HP15_2031at 2131.172 kb on - strand, within HP15_2031at 2131.337 kb on - strand, within HP15_2031

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml
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2,128,932 - HP15_2028 0.32 +0.0
2,128,957 - HP15_2028 0.37 +0.4
2,129,224 + -0.2
2,129,224 + -0.3
2,129,327 - +1.0
2,129,509 - HP15_2029 0.23 +1.0
2,129,518 + HP15_2029 0.24 +0.7
2,129,542 - HP15_2029 0.26 +0.2
2,129,655 - HP15_2029 0.37 +0.7
2,129,712 + HP15_2029 0.42 +1.1
2,129,733 - HP15_2029 0.44 +1.1
2,129,791 + HP15_2029 0.49 +1.1
2,129,794 - HP15_2029 0.50 +1.2
2,129,871 + HP15_2029 0.57 +1.4
2,129,925 - HP15_2029 0.62 -0.0
2,130,192 - HP15_2029 0.86 +0.8
2,130,207 + HP15_2029 0.88 +0.6
2,130,267 + -0.1
2,130,663 + -0.2
2,130,747 - +0.6
2,130,803 - -1.0
2,131,079 - HP15_2031 0.21 +0.8
2,131,172 - HP15_2031 0.27 -1.5
2,131,172 - HP15_2031 0.27 -1.8
2,131,337 - HP15_2031 0.39 -0.5

Or see this region's nucleotide sequence