Experiment: m.b. A22 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2027 and HP15_2028 are separated by 74 nucleotides HP15_2028 and HP15_2029 are separated by 7 nucleotides HP15_2029 and HP15_2030 are separated by 16 nucleotides HP15_2030 and HP15_2031 are separated by 203 nucleotides
HP15_2027: HP15_2027 - dihydrodipicolinate synthase, at 2,127,830 to 2,128,708
_2027
HP15_2028: HP15_2028 - protein containing alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen domain, at 2,128,783 to 2,129,250
_2028
HP15_2029: HP15_2029 - permease perM, at 2,129,258 to 2,130,337
_2029
HP15_2030: HP15_2030 - protein containing SirA-like domain, at 2,130,354 to 2,130,581
_2030
HP15_2031: HP15_2031 - putative Zn-dependent protease, contains TPR repeats, at 2,130,785 to 2,132,217
_2031
Position (kb)
2129
2130
2131 Strain fitness (log2 ratio)
-2
-1
0
1 at 2128.932 kb on - strand, within HP15_2028 at 2128.957 kb on - strand, within HP15_2028 at 2129.224 kb on + strand at 2129.224 kb on + strand at 2129.327 kb on - strand at 2129.509 kb on - strand, within HP15_2029 at 2129.518 kb on + strand, within HP15_2029 at 2129.542 kb on - strand, within HP15_2029 at 2129.655 kb on - strand, within HP15_2029 at 2129.712 kb on + strand, within HP15_2029 at 2129.733 kb on - strand, within HP15_2029 at 2129.791 kb on + strand, within HP15_2029 at 2129.794 kb on - strand, within HP15_2029 at 2129.871 kb on + strand, within HP15_2029 at 2129.925 kb on - strand, within HP15_2029 at 2130.192 kb on - strand, within HP15_2029 at 2130.207 kb on + strand, within HP15_2029 at 2130.267 kb on + strand at 2130.663 kb on + strand at 2130.747 kb on - strand at 2130.803 kb on - strand at 2131.079 kb on - strand, within HP15_2031 at 2131.172 kb on - strand, within HP15_2031 at 2131.172 kb on - strand, within HP15_2031 at 2131.337 kb on - strand, within HP15_2031
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.08 mg/ml remove 2,128,932 - HP15_2028 0.32 +0.0 2,128,957 - HP15_2028 0.37 +0.4 2,129,224 + -0.2 2,129,224 + -0.3 2,129,327 - +1.0 2,129,509 - HP15_2029 0.23 +1.0 2,129,518 + HP15_2029 0.24 +0.7 2,129,542 - HP15_2029 0.26 +0.2 2,129,655 - HP15_2029 0.37 +0.7 2,129,712 + HP15_2029 0.42 +1.1 2,129,733 - HP15_2029 0.44 +1.1 2,129,791 + HP15_2029 0.49 +1.1 2,129,794 - HP15_2029 0.50 +1.2 2,129,871 + HP15_2029 0.57 +1.4 2,129,925 - HP15_2029 0.62 -0.0 2,130,192 - HP15_2029 0.86 +0.8 2,130,207 + HP15_2029 0.88 +0.6 2,130,267 + -0.1 2,130,663 + -0.2 2,130,747 - +0.6 2,130,803 - -1.0 2,131,079 - HP15_2031 0.21 +0.8 2,131,172 - HP15_2031 0.27 -1.5 2,131,172 - HP15_2031 0.27 -1.8 2,131,337 - HP15_2031 0.39 -0.5
Or see this region's nucleotide sequence