Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1753

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1751 and DvMF_1752 are separated by 303 nucleotidesDvMF_1752 and DvMF_1753 are separated by 453 nucleotidesDvMF_1753 and DvMF_1754 are separated by 140 nucleotides DvMF_1751: DvMF_1751 - fructose-bisphosphate aldolase (RefSeq), at 2,139,616 to 2,140,413 _1751 DvMF_1752: DvMF_1752 - hypothetical protein (RefSeq), at 2,140,717 to 2,140,821 _1752 DvMF_1753: DvMF_1753 - hypothetical protein (RefSeq), at 2,141,275 to 2,141,832 _1753 DvMF_1754: DvMF_1754 - diguanylate phosphodiesterase (RefSeq), at 2,141,973 to 2,143,268 _1754 Position (kb) 2141 2142Strain fitness (log2 ratio) -1 0 1at 2140.831 kb on + strandat 2140.839 kb on - strandat 2140.839 kb on - strandat 2141.194 kb on + strandat 2141.277 kb on + strandat 2141.285 kb on - strandat 2141.295 kb on - strandat 2141.295 kb on - strandat 2141.338 kb on + strand, within DvMF_1753at 2141.393 kb on + strand, within DvMF_1753at 2141.408 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.500 kb on + strand, within DvMF_1753at 2141.508 kb on - strand, within DvMF_1753at 2141.768 kb on - strand, within DvMF_1753at 2142.337 kb on + strand, within DvMF_1754at 2142.346 kb on + strand, within DvMF_1754

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,140,831 + -1.3
2,140,839 - -0.4
2,140,839 - -0.9
2,141,194 + -0.7
2,141,277 + -0.5
2,141,285 - +0.0
2,141,295 - -0.4
2,141,295 - -0.6
2,141,338 + DvMF_1753 0.11 -0.7
2,141,393 + DvMF_1753 0.21 -0.3
2,141,408 + DvMF_1753 0.24 -0.1
2,141,500 + DvMF_1753 0.40 -0.2
2,141,500 + DvMF_1753 0.40 -0.1
2,141,500 + DvMF_1753 0.40 -0.3
2,141,500 + DvMF_1753 0.40 -0.2
2,141,508 - DvMF_1753 0.42 +0.1
2,141,768 - DvMF_1753 0.88 -0.3
2,142,337 + DvMF_1754 0.28 -0.7
2,142,346 + DvMF_1754 0.29 -0.7

Or see this region's nucleotide sequence