Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0378 and DvMF_R0018 are separated by 149 nucleotides DvMF_R0018 and DvMF_0379 are separated by 258 nucleotides DvMF_0379 and DvMF_0380 are separated by 213 nucleotides
DvMF_0378: DvMF_0378 - undecaprenol kinase (RefSeq), at 444,480 to 445,277
_0378
DvMF_R0018: DvMF_R0018 - tRNA-Met (RefSeq), at 445,427 to 445,503
_R0018
DvMF_0379: DvMF_0379 - natural resistance-associated macrophage protein (RefSeq), at 445,762 to 447,087
_0379
DvMF_0380: DvMF_0380 - hypothetical protein (RefSeq), at 447,301 to 447,816
_0380
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -1
0
1 at 445.174 kb on + strand, within DvMF_0378 at 445.182 kb on - strand, within DvMF_0378 at 445.234 kb on + strand at 445.327 kb on - strand at 445.621 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.718 kb on - strand at 445.718 kb on - strand at 445.903 kb on - strand, within DvMF_0379 at 445.909 kb on - strand, within DvMF_0379 at 446.007 kb on + strand, within DvMF_0379 at 446.014 kb on + strand, within DvMF_0379 at 446.015 kb on - strand, within DvMF_0379 at 446.037 kb on - strand, within DvMF_0379 at 446.230 kb on + strand, within DvMF_0379 at 446.238 kb on - strand, within DvMF_0379 at 446.328 kb on - strand, within DvMF_0379 at 446.351 kb on - strand, within DvMF_0379 at 446.387 kb on - strand, within DvMF_0379 at 446.795 kb on - strand, within DvMF_0379 at 446.796 kb on + strand, within DvMF_0379 at 447.095 kb on - strand at 447.190 kb on + strand at 447.208 kb on - strand at 447.305 kb on - strand at 447.359 kb on + strand, within DvMF_0380 at 447.432 kb on + strand, within DvMF_0380 at 447.440 kb on - strand, within DvMF_0380 at 447.440 kb on - strand, within DvMF_0380 at 447.440 kb on - strand, within DvMF_0380 at 447.440 kb on - strand, within DvMF_0380 at 447.440 kb on - strand, within DvMF_0380 at 448.041 kb on - strand at 448.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 445,174 + DvMF_0378 0.87 -1.0 445,182 - DvMF_0378 0.88 -1.2 445,234 + -0.4 445,327 - -0.2 445,621 + -0.4 445,710 + -0.5 445,710 + +0.4 445,710 + -0.6 445,718 - -0.5 445,718 - -1.4 445,903 - DvMF_0379 0.11 -0.2 445,909 - DvMF_0379 0.11 -1.3 446,007 + DvMF_0379 0.18 -0.9 446,014 + DvMF_0379 0.19 +0.2 446,015 - DvMF_0379 0.19 -0.6 446,037 - DvMF_0379 0.21 -0.4 446,230 + DvMF_0379 0.35 -0.4 446,238 - DvMF_0379 0.36 -1.2 446,328 - DvMF_0379 0.43 -0.0 446,351 - DvMF_0379 0.44 -0.7 446,387 - DvMF_0379 0.47 -0.4 446,795 - DvMF_0379 0.78 -0.5 446,796 + DvMF_0379 0.78 -0.4 447,095 - -0.6 447,190 + -0.2 447,208 - +0.5 447,305 - +0.3 447,359 + DvMF_0380 0.11 +0.3 447,432 + DvMF_0380 0.25 -0.2 447,440 - DvMF_0380 0.27 +0.1 447,440 - DvMF_0380 0.27 -0.5 447,440 - DvMF_0380 0.27 -0.2 447,440 - DvMF_0380 0.27 -0.3 447,440 - DvMF_0380 0.27 -0.0 448,041 - -0.4 448,073 + -0.4
Or see this region's nucleotide sequence