Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.993.1 and Xcc-8004.994.1 are separated by 62 nucleotides Xcc-8004.994.1 and Xcc-8004.995.1 are separated by 78 nucleotides Xcc-8004.995.1 and Xcc-8004.996.1 are separated by 0 nucleotides Xcc-8004.996.1 and Xcc-8004.997.1 are separated by 185 nucleotides Xcc-8004.997.1 and Xcc-8004.998.1 are separated by 1 nucleotides
Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416
Xcc-8004.993.1
Xcc-8004.994.1: Xcc-8004.994.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 942,479 to 942,898
Xcc-8004.994.1
Xcc-8004.995.1: Xcc-8004.995.1 - rhamnogalacturonase B, at 942,977 to 943,399
Xcc-8004.995.1
Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101
Xcc-8004.996.1
Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658
Xcc-8004.997.1
Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202
Xcc-8004.998.1
Position (kb) 943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 942.420 kb on + strand at 942.420 kb on + strand at 942.421 kb on - strand at 942.507 kb on + strand at 942.797 kb on - strand, within Xcc-8004.994.1 at 942.876 kb on + strand at 942.877 kb on - strand at 942.877 kb on - strand at 942.877 kb on - strand at 942.939 kb on + strand at 943.083 kb on + strand, within Xcc-8004.995.1 at 943.083 kb on + strand, within Xcc-8004.995.1 at 943.084 kb on - strand, within Xcc-8004.995.1 at 943.129 kb on - strand, within Xcc-8004.995.1 at 943.158 kb on + strand, within Xcc-8004.995.1 at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.402 kb on - strand at 943.402 kb on - strand at 943.408 kb on - strand at 943.561 kb on - strand, within Xcc-8004.996.1 at 943.734 kb on + strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.767 kb on + strand, within Xcc-8004.996.1 at 943.768 kb on - strand, within Xcc-8004.996.1 at 944.034 kb on + strand at 944.035 kb on - strand at 944.127 kb on + strand at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 944.375 kb on - strand, within Xcc-8004.997.1 at 945.069 kb on + strand, within Xcc-8004.998.1 at 945.070 kb on - strand, within Xcc-8004.998.1 at 945.097 kb on - strand, within Xcc-8004.998.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 942,420 + -0.9 942,420 + -1.7 942,421 - +0.2 942,507 + -0.2 942,797 - Xcc-8004.994.1 0.76 -0.1 942,876 + +0.8 942,877 - -1.6 942,877 - -0.0 942,877 - -0.5 942,939 + -0.9 943,083 + Xcc-8004.995.1 0.25 +0.6 943,083 + Xcc-8004.995.1 0.25 -0.9 943,084 - Xcc-8004.995.1 0.25 +0.0 943,129 - Xcc-8004.995.1 0.36 -0.8 943,158 + Xcc-8004.995.1 0.43 -0.3 943,401 + -1.4 943,401 + -0.6 943,401 + +0.5 943,401 + -1.1 943,401 + -3.1 943,401 + -1.9 943,402 - -0.3 943,402 - -0.5 943,408 - -0.0 943,561 - Xcc-8004.996.1 0.23 +1.4 943,734 + Xcc-8004.996.1 0.48 +0.3 943,735 - Xcc-8004.996.1 0.48 +0.1 943,735 - Xcc-8004.996.1 0.48 +1.6 943,735 - Xcc-8004.996.1 0.48 -0.5 943,735 - Xcc-8004.996.1 0.48 +1.4 943,764 + Xcc-8004.996.1 0.52 -0.5 943,764 + Xcc-8004.996.1 0.52 -0.4 943,765 - Xcc-8004.996.1 0.52 +0.2 943,765 - Xcc-8004.996.1 0.52 +0.6 943,765 - Xcc-8004.996.1 0.52 +0.2 943,765 - Xcc-8004.996.1 0.52 +1.2 943,767 + Xcc-8004.996.1 0.52 +0.1 943,768 - Xcc-8004.996.1 0.52 +0.4 944,034 + -1.2 944,035 - -0.4 944,127 + -1.6 944,375 - Xcc-8004.997.1 0.24 +0.1 944,375 - Xcc-8004.997.1 0.24 -1.9 944,375 - Xcc-8004.997.1 0.24 -0.6 944,375 - Xcc-8004.997.1 0.24 -0.0 945,069 + Xcc-8004.998.1 0.75 +0.4 945,070 - Xcc-8004.998.1 0.76 +1.2 945,097 - Xcc-8004.998.1 0.80 -0.2
Or see this region's nucleotide sequence