Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.304.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.302.1 and Xcc-8004.304.1 are separated by 411 nucleotidesXcc-8004.304.1 and Xcc-8004.305.1 are separated by 88 nucleotidesXcc-8004.305.1 and Xcc-8004.306.1 are separated by 221 nucleotides Xcc-8004.302.1: Xcc-8004.302.1 - FIG01210109: hypothetical protein, at 290,203 to 292,362 Xcc-8004.302.1 Xcc-8004.304.1: Xcc-8004.304.1 - Outer membrane protein romA, at 292,774 to 293,826 Xcc-8004.304.1 Xcc-8004.305.1: Xcc-8004.305.1 - hypothetical protein, at 293,915 to 294,547 Xcc-8004.305.1 Xcc-8004.306.1: Xcc-8004.306.1 - Glyoxalase family protein, at 294,769 to 295,143 Xcc-8004.306.1 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 291.859 kb on + strand, within Xcc-8004.302.1at 291.860 kb on - strand, within Xcc-8004.302.1at 291.860 kb on - strand, within Xcc-8004.302.1at 292.111 kb on + strand, within Xcc-8004.302.1at 292.219 kb on + strandat 292.575 kb on - strandat 292.575 kb on - strandat 292.632 kb on + strandat 292.633 kb on - strandat 293.012 kb on + strand, within Xcc-8004.304.1at 293.012 kb on + strand, within Xcc-8004.304.1at 293.012 kb on + strand, within Xcc-8004.304.1at 293.012 kb on + strand, within Xcc-8004.304.1at 293.013 kb on - strand, within Xcc-8004.304.1at 293.013 kb on - strand, within Xcc-8004.304.1at 293.013 kb on - strand, within Xcc-8004.304.1at 293.013 kb on - strand, within Xcc-8004.304.1at 293.066 kb on + strand, within Xcc-8004.304.1at 293.067 kb on - strand, within Xcc-8004.304.1at 293.335 kb on + strand, within Xcc-8004.304.1at 293.335 kb on + strand, within Xcc-8004.304.1at 293.335 kb on + strand, within Xcc-8004.304.1at 293.335 kb on + strand, within Xcc-8004.304.1at 293.335 kb on + strand, within Xcc-8004.304.1at 293.336 kb on - strand, within Xcc-8004.304.1at 293.336 kb on - strand, within Xcc-8004.304.1at 293.336 kb on - strand, within Xcc-8004.304.1at 293.336 kb on - strand, within Xcc-8004.304.1at 293.342 kb on - strand, within Xcc-8004.304.1at 293.342 kb on - strand, within Xcc-8004.304.1at 293.423 kb on + strand, within Xcc-8004.304.1at 293.423 kb on + strand, within Xcc-8004.304.1at 293.423 kb on + strand, within Xcc-8004.304.1at 293.424 kb on - strand, within Xcc-8004.304.1at 293.424 kb on - strand, within Xcc-8004.304.1at 293.424 kb on - strand, within Xcc-8004.304.1at 293.674 kb on + strand, within Xcc-8004.304.1at 293.675 kb on - strand, within Xcc-8004.304.1at 293.675 kb on - strand, within Xcc-8004.304.1at 293.805 kb on - strandat 293.805 kb on - strandat 293.805 kb on - strandat 293.856 kb on - strandat 293.856 kb on - strandat 293.869 kb on + strandat 293.890 kb on - strandat 293.903 kb on + strandat 294.077 kb on + strand, within Xcc-8004.305.1at 294.077 kb on + strand, within Xcc-8004.305.1at 294.077 kb on + strand, within Xcc-8004.305.1at 294.077 kb on + strand, within Xcc-8004.305.1at 294.078 kb on - strand, within Xcc-8004.305.1at 294.078 kb on - strand, within Xcc-8004.305.1at 294.078 kb on - strand, within Xcc-8004.305.1at 294.129 kb on + strand, within Xcc-8004.305.1at 294.130 kb on - strand, within Xcc-8004.305.1at 294.130 kb on - strand, within Xcc-8004.305.1at 294.164 kb on + strand, within Xcc-8004.305.1at 294.164 kb on + strand, within Xcc-8004.305.1at 294.165 kb on - strand, within Xcc-8004.305.1at 294.607 kb on - strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.633 kb on + strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.634 kb on - strandat 294.771 kb on - strandat 294.771 kb on - strandat 294.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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291,859 + Xcc-8004.302.1 0.77 -0.0
291,860 - Xcc-8004.302.1 0.77 +1.0
291,860 - Xcc-8004.302.1 0.77 -0.4
292,111 + Xcc-8004.302.1 0.88 +1.6
292,219 + +0.1
292,575 - +1.0
292,575 - +0.2
292,632 + -0.9
292,633 - +1.9
293,012 + Xcc-8004.304.1 0.23 -0.8
293,012 + Xcc-8004.304.1 0.23 -2.1
293,012 + Xcc-8004.304.1 0.23 -0.9
293,012 + Xcc-8004.304.1 0.23 -0.3
293,013 - Xcc-8004.304.1 0.23 +0.0
293,013 - Xcc-8004.304.1 0.23 +0.2
293,013 - Xcc-8004.304.1 0.23 -2.5
293,013 - Xcc-8004.304.1 0.23 +0.8
293,066 + Xcc-8004.304.1 0.28 -0.0
293,067 - Xcc-8004.304.1 0.28 -2.0
293,335 + Xcc-8004.304.1 0.53 -2.2
293,335 + Xcc-8004.304.1 0.53 +0.3
293,335 + Xcc-8004.304.1 0.53 -0.9
293,335 + Xcc-8004.304.1 0.53 -0.0
293,335 + Xcc-8004.304.1 0.53 +1.2
293,336 - Xcc-8004.304.1 0.53 -0.6
293,336 - Xcc-8004.304.1 0.53 -0.3
293,336 - Xcc-8004.304.1 0.53 +0.8
293,336 - Xcc-8004.304.1 0.53 -1.3
293,342 - Xcc-8004.304.1 0.54 -0.6
293,342 - Xcc-8004.304.1 0.54 -0.2
293,423 + Xcc-8004.304.1 0.62 -0.2
293,423 + Xcc-8004.304.1 0.62 +1.0
293,423 + Xcc-8004.304.1 0.62 +0.7
293,424 - Xcc-8004.304.1 0.62 -0.9
293,424 - Xcc-8004.304.1 0.62 -1.0
293,424 - Xcc-8004.304.1 0.62 -0.4
293,674 + Xcc-8004.304.1 0.85 +0.2
293,675 - Xcc-8004.304.1 0.86 -1.8
293,675 - Xcc-8004.304.1 0.86 -0.8
293,805 - +0.3
293,805 - -0.1
293,805 - +0.4
293,856 - -0.2
293,856 - -1.1
293,869 + -0.8
293,890 - +0.7
293,903 + +1.3
294,077 + Xcc-8004.305.1 0.26 +0.5
294,077 + Xcc-8004.305.1 0.26 +2.2
294,077 + Xcc-8004.305.1 0.26 +1.8
294,077 + Xcc-8004.305.1 0.26 +0.5
294,078 - Xcc-8004.305.1 0.26 +1.7
294,078 - Xcc-8004.305.1 0.26 +3.8
294,078 - Xcc-8004.305.1 0.26 -0.3
294,129 + Xcc-8004.305.1 0.34 +0.3
294,130 - Xcc-8004.305.1 0.34 +1.0
294,130 - Xcc-8004.305.1 0.34 +1.3
294,164 + Xcc-8004.305.1 0.39 -1.7
294,164 + Xcc-8004.305.1 0.39 +0.5
294,165 - Xcc-8004.305.1 0.39 -1.5
294,607 - +0.6
294,633 + +0.6
294,633 + -1.9
294,633 + -1.4
294,633 + -0.3
294,633 + -0.6
294,633 + +2.5
294,633 + +0.0
294,633 + -0.4
294,633 + +0.5
294,633 + -1.9
294,633 + -0.1
294,633 + +0.8
294,633 + +0.6
294,633 + +0.1
294,633 + -0.2
294,634 - +1.1
294,634 - +0.9
294,634 - +0.6
294,634 - -0.7
294,634 - +0.3
294,634 - -1.5
294,634 - -1.5
294,634 - -0.3
294,634 - +1.9
294,634 - -1.7
294,634 - +1.5
294,634 - -1.5
294,771 - +1.6
294,771 - -0.2
294,798 - -0.1

Or see this region's nucleotide sequence