Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2723.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2721.1 and Xcc-8004.2722.1 are separated by 125 nucleotidesXcc-8004.2722.1 and Xcc-8004.2723.1 are separated by 61 nucleotidesXcc-8004.2723.1 and Xcc-8004.2724.1 overlap by 4 nucleotidesXcc-8004.2724.1 and Xcc-8004.2725.1 are separated by 3 nucleotides Xcc-8004.2721.1: Xcc-8004.2721.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 2,632,800 to 2,633,903 Xcc-8004.2721.1 Xcc-8004.2722.1: Xcc-8004.2722.1 - Putative outer membrane or secreted lipoprotein, at 2,634,029 to 2,634,784 Xcc-8004.2722.1 Xcc-8004.2723.1: Xcc-8004.2723.1 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 2,634,846 to 2,636,015 Xcc-8004.2723.1 Xcc-8004.2724.1: Xcc-8004.2724.1 - FIG01212801: hypothetical protein, at 2,636,012 to 2,636,557 Xcc-8004.2724.1 Xcc-8004.2725.1: Xcc-8004.2725.1 - FIG01210960: hypothetical protein, at 2,636,561 to 2,637,256 Xcc-8004.2725.1 Position (kb) 2634 2635 2636 2637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2633.852 kb on + strandat 2633.852 kb on + strandat 2633.852 kb on + strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.853 kb on - strandat 2633.910 kb on + strandat 2633.918 kb on + strandat 2633.995 kb on + strandat 2634.097 kb on + strandat 2634.098 kb on - strandat 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.194 kb on + strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.195 kb on - strand, within Xcc-8004.2722.1at 2634.254 kb on + strand, within Xcc-8004.2722.1at 2634.254 kb on + strand, within Xcc-8004.2722.1at 2634.255 kb on - strand, within Xcc-8004.2722.1at 2634.255 kb on - strand, within Xcc-8004.2722.1at 2634.308 kb on - strand, within Xcc-8004.2722.1at 2634.338 kb on + strand, within Xcc-8004.2722.1at 2634.339 kb on - strand, within Xcc-8004.2722.1at 2634.339 kb on - strand, within Xcc-8004.2722.1at 2634.491 kb on + strand, within Xcc-8004.2722.1at 2634.491 kb on + strand, within Xcc-8004.2722.1at 2634.847 kb on + strandat 2634.847 kb on + strandat 2634.848 kb on - strandat 2634.902 kb on - strandat 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.997 kb on + strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2634.998 kb on - strand, within Xcc-8004.2723.1at 2635.067 kb on + strand, within Xcc-8004.2723.1at 2635.081 kb on + strand, within Xcc-8004.2723.1at 2635.082 kb on - strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.189 kb on + strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.190 kb on - strand, within Xcc-8004.2723.1at 2635.307 kb on - strand, within Xcc-8004.2723.1at 2635.454 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.591 kb on + strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.592 kb on - strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.631 kb on + strand, within Xcc-8004.2723.1at 2635.632 kb on - strand, within Xcc-8004.2723.1at 2635.632 kb on - strand, within Xcc-8004.2723.1at 2635.633 kb on + strand, within Xcc-8004.2723.1at 2635.634 kb on - strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.639 kb on + strand, within Xcc-8004.2723.1at 2635.755 kb on - strand, within Xcc-8004.2723.1at 2635.755 kb on - strand, within Xcc-8004.2723.1at 2635.768 kb on - strand, within Xcc-8004.2723.1at 2635.768 kb on - strand, within Xcc-8004.2723.1at 2635.873 kb on + strand, within Xcc-8004.2723.1at 2636.139 kb on + strand, within Xcc-8004.2724.1at 2636.139 kb on + strand, within Xcc-8004.2724.1at 2636.140 kb on - strand, within Xcc-8004.2724.1at 2636.164 kb on + strand, within Xcc-8004.2724.1at 2636.165 kb on - strand, within Xcc-8004.2724.1at 2636.295 kb on + strand, within Xcc-8004.2724.1at 2636.296 kb on - strand, within Xcc-8004.2724.1at 2636.296 kb on - strand, within Xcc-8004.2724.1at 2636.333 kb on + strand, within Xcc-8004.2724.1at 2636.334 kb on - strand, within Xcc-8004.2724.1at 2636.334 kb on - strand, within Xcc-8004.2724.1at 2636.345 kb on + strand, within Xcc-8004.2724.1at 2636.345 kb on + strand, within Xcc-8004.2724.1at 2636.345 kb on + strand, within Xcc-8004.2724.1at 2636.345 kb on + strand, within Xcc-8004.2724.1at 2636.345 kb on + strand, within Xcc-8004.2724.1at 2636.346 kb on - strand, within Xcc-8004.2724.1at 2636.346 kb on - strand, within Xcc-8004.2724.1at 2636.562 kb on + strandat 2636.562 kb on + strandat 2636.836 kb on + strand, within Xcc-8004.2725.1at 2636.837 kb on - strand, within Xcc-8004.2725.1at 2636.902 kb on - strand, within Xcc-8004.2725.1at 2636.966 kb on - strand, within Xcc-8004.2725.1at 2636.987 kb on + strand, within Xcc-8004.2725.1at 2636.988 kb on - strand, within Xcc-8004.2725.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,633,852 + +0.3
2,633,852 + -1.8
2,633,852 + -0.4
2,633,853 - -1.0
2,633,853 - -0.4
2,633,853 - +0.8
2,633,853 - -0.3
2,633,853 - +1.4
2,633,853 - -0.3
2,633,910 + -1.1
2,633,918 + +2.0
2,633,995 + -0.2
2,634,097 + -0.0
2,634,098 - +0.1
2,634,194 + Xcc-8004.2722.1 0.22 -2.9
2,634,194 + Xcc-8004.2722.1 0.22 +1.2
2,634,194 + Xcc-8004.2722.1 0.22 -1.9
2,634,195 - Xcc-8004.2722.1 0.22 -1.2
2,634,195 - Xcc-8004.2722.1 0.22 +0.6
2,634,195 - Xcc-8004.2722.1 0.22 -0.1
2,634,195 - Xcc-8004.2722.1 0.22 -0.4
2,634,254 + Xcc-8004.2722.1 0.30 -0.1
2,634,254 + Xcc-8004.2722.1 0.30 +0.7
2,634,255 - Xcc-8004.2722.1 0.30 +0.7
2,634,255 - Xcc-8004.2722.1 0.30 -2.2
2,634,308 - Xcc-8004.2722.1 0.37 -0.3
2,634,338 + Xcc-8004.2722.1 0.41 +0.3
2,634,339 - Xcc-8004.2722.1 0.41 -1.3
2,634,339 - Xcc-8004.2722.1 0.41 -1.9
2,634,491 + Xcc-8004.2722.1 0.61 +1.7
2,634,491 + Xcc-8004.2722.1 0.61 +0.1
2,634,847 + +0.9
2,634,847 + +2.4
2,634,848 - -1.4
2,634,902 - +0.2
2,634,997 + Xcc-8004.2723.1 0.13 +0.6
2,634,997 + Xcc-8004.2723.1 0.13 +0.1
2,634,997 + Xcc-8004.2723.1 0.13 +0.6
2,634,997 + Xcc-8004.2723.1 0.13 -0.5
2,634,997 + Xcc-8004.2723.1 0.13 -0.1
2,634,997 + Xcc-8004.2723.1 0.13 -1.6
2,634,997 + Xcc-8004.2723.1 0.13 +0.3
2,634,997 + Xcc-8004.2723.1 0.13 +0.3
2,634,997 + Xcc-8004.2723.1 0.13 +2.2
2,634,997 + Xcc-8004.2723.1 0.13 +0.2
2,634,997 + Xcc-8004.2723.1 0.13 -1.2
2,634,997 + Xcc-8004.2723.1 0.13 +1.5
2,634,997 + Xcc-8004.2723.1 0.13 +0.1
2,634,998 - Xcc-8004.2723.1 0.13 -0.7
2,634,998 - Xcc-8004.2723.1 0.13 -0.3
2,634,998 - Xcc-8004.2723.1 0.13 +1.5
2,634,998 - Xcc-8004.2723.1 0.13 -1.0
2,634,998 - Xcc-8004.2723.1 0.13 -0.4
2,634,998 - Xcc-8004.2723.1 0.13 +2.5
2,634,998 - Xcc-8004.2723.1 0.13 +0.7
2,634,998 - Xcc-8004.2723.1 0.13 -1.6
2,634,998 - Xcc-8004.2723.1 0.13 +0.3
2,635,067 + Xcc-8004.2723.1 0.19 +0.4
2,635,081 + Xcc-8004.2723.1 0.20 +0.9
2,635,082 - Xcc-8004.2723.1 0.20 -0.1
2,635,189 + Xcc-8004.2723.1 0.29 +0.8
2,635,189 + Xcc-8004.2723.1 0.29 +1.5
2,635,189 + Xcc-8004.2723.1 0.29 +0.8
2,635,189 + Xcc-8004.2723.1 0.29 -0.1
2,635,189 + Xcc-8004.2723.1 0.29 +0.6
2,635,189 + Xcc-8004.2723.1 0.29 +1.3
2,635,190 - Xcc-8004.2723.1 0.29 +1.5
2,635,190 - Xcc-8004.2723.1 0.29 -2.5
2,635,190 - Xcc-8004.2723.1 0.29 +1.0
2,635,190 - Xcc-8004.2723.1 0.29 -1.0
2,635,307 - Xcc-8004.2723.1 0.39 -1.0
2,635,454 + Xcc-8004.2723.1 0.52 -0.9
2,635,591 + Xcc-8004.2723.1 0.64 +0.4
2,635,591 + Xcc-8004.2723.1 0.64 -0.3
2,635,591 + Xcc-8004.2723.1 0.64 -1.1
2,635,591 + Xcc-8004.2723.1 0.64 -0.8
2,635,591 + Xcc-8004.2723.1 0.64 +0.3
2,635,591 + Xcc-8004.2723.1 0.64 +1.3
2,635,591 + Xcc-8004.2723.1 0.64 -2.7
2,635,591 + Xcc-8004.2723.1 0.64 +1.0
2,635,591 + Xcc-8004.2723.1 0.64 -0.0
2,635,591 + Xcc-8004.2723.1 0.64 -0.2
2,635,592 - Xcc-8004.2723.1 0.64 +0.9
2,635,592 - Xcc-8004.2723.1 0.64 -0.7
2,635,592 - Xcc-8004.2723.1 0.64 +0.1
2,635,592 - Xcc-8004.2723.1 0.64 +1.1
2,635,592 - Xcc-8004.2723.1 0.64 -1.4
2,635,592 - Xcc-8004.2723.1 0.64 -1.2
2,635,592 - Xcc-8004.2723.1 0.64 +1.4
2,635,592 - Xcc-8004.2723.1 0.64 -0.4
2,635,631 + Xcc-8004.2723.1 0.67 +0.2
2,635,631 + Xcc-8004.2723.1 0.67 +0.0
2,635,631 + Xcc-8004.2723.1 0.67 +0.3
2,635,631 + Xcc-8004.2723.1 0.67 -1.6
2,635,631 + Xcc-8004.2723.1 0.67 -0.3
2,635,632 - Xcc-8004.2723.1 0.67 +0.7
2,635,632 - Xcc-8004.2723.1 0.67 +0.8
2,635,633 + Xcc-8004.2723.1 0.67 +0.6
2,635,634 - Xcc-8004.2723.1 0.67 +0.4
2,635,639 + Xcc-8004.2723.1 0.68 -1.1
2,635,639 + Xcc-8004.2723.1 0.68 +0.1
2,635,639 + Xcc-8004.2723.1 0.68 +1.4
2,635,755 - Xcc-8004.2723.1 0.78 +0.1
2,635,755 - Xcc-8004.2723.1 0.78 +0.7
2,635,768 - Xcc-8004.2723.1 0.79 -1.8
2,635,768 - Xcc-8004.2723.1 0.79 -0.5
2,635,873 + Xcc-8004.2723.1 0.88 +1.3
2,636,139 + Xcc-8004.2724.1 0.23 +1.4
2,636,139 + Xcc-8004.2724.1 0.23 +0.1
2,636,140 - Xcc-8004.2724.1 0.23 -1.3
2,636,164 + Xcc-8004.2724.1 0.28 -1.4
2,636,165 - Xcc-8004.2724.1 0.28 -0.2
2,636,295 + Xcc-8004.2724.1 0.52 -0.3
2,636,296 - Xcc-8004.2724.1 0.52 -0.7
2,636,296 - Xcc-8004.2724.1 0.52 -0.3
2,636,333 + Xcc-8004.2724.1 0.59 -0.7
2,636,334 - Xcc-8004.2724.1 0.59 -1.7
2,636,334 - Xcc-8004.2724.1 0.59 +0.5
2,636,345 + Xcc-8004.2724.1 0.61 +0.0
2,636,345 + Xcc-8004.2724.1 0.61 -0.9
2,636,345 + Xcc-8004.2724.1 0.61 +1.1
2,636,345 + Xcc-8004.2724.1 0.61 -1.5
2,636,345 + Xcc-8004.2724.1 0.61 +0.6
2,636,346 - Xcc-8004.2724.1 0.61 -0.5
2,636,346 - Xcc-8004.2724.1 0.61 +0.7
2,636,562 + +1.4
2,636,562 + +0.2
2,636,836 + Xcc-8004.2725.1 0.40 +1.4
2,636,837 - Xcc-8004.2725.1 0.40 +0.8
2,636,902 - Xcc-8004.2725.1 0.49 -0.0
2,636,966 - Xcc-8004.2725.1 0.58 -0.2
2,636,987 + Xcc-8004.2725.1 0.61 +0.6
2,636,988 - Xcc-8004.2725.1 0.61 -1.9

Or see this region's nucleotide sequence