Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2144.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI
2,061,882	+		Xcc-8004.2143.1	0.75	+1.0
2,061,882	+		Xcc-8004.2143.1	0.75	-0.5
2,061,931	+		Xcc-8004.2143.1	0.77	+1.2
2,062,068	+		Xcc-8004.2143.1	0.81	-2.0
2,062,068	+		Xcc-8004.2143.1	0.81	-0.9
2,062,069	-		Xcc-8004.2143.1	0.81	-2.2
2,062,070	+		Xcc-8004.2143.1	0.81	-0.3
2,062,116	+		Xcc-8004.2143.1	0.83	+0.2
2,062,171	-		Xcc-8004.2143.1	0.85	+0.9
2,062,205	+		Xcc-8004.2143.1	0.86	+1.3
2,062,205	+		Xcc-8004.2143.1	0.86	-0.1
2,062,206	-		Xcc-8004.2143.1	0.86	-0.4
2,062,206	-		Xcc-8004.2143.1	0.86	+0.3
2,062,206	-		Xcc-8004.2143.1	0.86	-0.1
2,062,209	+		Xcc-8004.2143.1	0.86	-1.3
2,062,209	+		Xcc-8004.2143.1	0.86	-0.9
2,062,311	+		Xcc-8004.2143.1	0.90	+0.4
2,062,312	-				+0.1
2,062,342	-				+0.4
2,062,507	-				-1.0
2,062,507	-				+1.6
2,062,513	-				+0.8
2,062,513	-				-2.0
2,062,545	+				-1.7
2,062,545	+				+0.3
2,062,546	-				-1.1
2,062,546	-				-0.3
2,062,564	-				-1.5
2,062,661	+				-0.3
2,062,661	+				-1.4
2,062,662	-				-0.1
2,062,662	-				-1.6
2,062,903	+				-0.0
2,062,904	-				+3.0
2,062,904	-				-0.1
2,062,904	-				-0.8
2,062,904	-				+0.7
2,062,904	-				-1.3
2,062,904	-				-1.1
2,062,904	-				+0.8
2,062,933	-				+0.1
2,063,261	+				+0.8
2,063,261	+				+1.5
2,063,262	-				-0.1
2,063,307	+		Xcc-8004.2144.1	0.10	+0.1
2,063,312	+		Xcc-8004.2144.1	0.10	-0.8
2,063,313	-		Xcc-8004.2144.1	0.10	-0.7
2,063,313	-		Xcc-8004.2144.1	0.10	+1.9
2,063,420	+		Xcc-8004.2144.1	0.13	-0.5
2,063,421	-		Xcc-8004.2144.1	0.13	-0.9
2,063,477	+		Xcc-8004.2144.1	0.14	+0.5
2,063,477	+		Xcc-8004.2144.1	0.14	+0.3
2,063,478	-		Xcc-8004.2144.1	0.14	+0.1
2,063,542	+		Xcc-8004.2144.1	0.16	-0.5
2,063,543	-		Xcc-8004.2144.1	0.16	-2.3
2,063,543	-		Xcc-8004.2144.1	0.16	+0.1
2,063,543	-		Xcc-8004.2144.1	0.16	+0.1
2,063,618	+		Xcc-8004.2144.1	0.17	+0.1
2,063,618	+		Xcc-8004.2144.1	0.17	-0.2
2,063,819	+		Xcc-8004.2144.1	0.22	+1.2
2,063,819	+		Xcc-8004.2144.1	0.22	+0.2
2,063,819	+		Xcc-8004.2144.1	0.22	-0.1
2,063,820	-		Xcc-8004.2144.1	0.22	+0.8
2,063,820	-		Xcc-8004.2144.1	0.22	-1.5
2,063,840	+		Xcc-8004.2144.1	0.22	+1.4
2,063,912	+		Xcc-8004.2144.1	0.24	-0.4
2,063,913	-		Xcc-8004.2144.1	0.24	-0.6
2,063,969	+		Xcc-8004.2144.1	0.25	+1.2
2,064,005	+		Xcc-8004.2144.1	0.26	+0.5
2,064,074	+		Xcc-8004.2144.1	0.28	+0.5
2,064,075	-		Xcc-8004.2144.1	0.28	+0.2
2,064,125	+		Xcc-8004.2144.1	0.29	+0.1
2,064,125	+		Xcc-8004.2144.1	0.29	+0.5
2,064,125	+		Xcc-8004.2144.1	0.29	-2.1
2,064,126	-		Xcc-8004.2144.1	0.29	-0.3
2,064,126	-		Xcc-8004.2144.1	0.29	-1.1
2,064,126	-		Xcc-8004.2144.1	0.29	+1.1
2,064,251	+		Xcc-8004.2144.1	0.32	+0.3
2,064,252	-		Xcc-8004.2144.1	0.32	-0.6
2,064,276	+		Xcc-8004.2144.1	0.32	-2.0
2,064,276	+		Xcc-8004.2144.1	0.32	-1.0
2,064,287	+		Xcc-8004.2144.1	0.33	-0.4
2,064,417	-		Xcc-8004.2144.1	0.36	+0.5
2,064,417	-		Xcc-8004.2144.1	0.36	+0.8
2,064,423	-		Xcc-8004.2144.1	0.36	-0.1
2,064,531	+		Xcc-8004.2144.1	0.38	-0.9
2,064,643	+		Xcc-8004.2144.1	0.41	-2.3
2,064,644	-		Xcc-8004.2144.1	0.41	-0.5
2,064,644	-		Xcc-8004.2144.1	0.41	+1.1
2,064,647	+		Xcc-8004.2144.1	0.41	+0.6
2,064,647	+		Xcc-8004.2144.1	0.41	+0.2
2,064,647	+		Xcc-8004.2144.1	0.41	+0.9
2,064,647	+		Xcc-8004.2144.1	0.41	-0.7
2,064,647	+		Xcc-8004.2144.1	0.41	-0.6
2,064,647	+		Xcc-8004.2144.1	0.41	-0.1
2,064,647	+		Xcc-8004.2144.1	0.41	-0.3
2,064,648	-		Xcc-8004.2144.1	0.41	+1.7
2,064,648	-		Xcc-8004.2144.1	0.41	-0.4
2,064,648	-		Xcc-8004.2144.1	0.41	+1.2
2,064,648	-		Xcc-8004.2144.1	0.41	-2.0
2,064,648	-		Xcc-8004.2144.1	0.41	+2.1
2,064,648	-		Xcc-8004.2144.1	0.41	-1.3
2,064,648	-		Xcc-8004.2144.1	0.41	+0.9
2,064,650	+		Xcc-8004.2144.1	0.41	+0.7
2,064,707	+		Xcc-8004.2144.1	0.42	-2.2
2,064,708	-		Xcc-8004.2144.1	0.42	+0.0
2,064,877	-		Xcc-8004.2144.1	0.46	+0.2
2,064,896	+		Xcc-8004.2144.1	0.47	+1.7
2,064,950	+		Xcc-8004.2144.1	0.48	+0.1
2,064,950	+		Xcc-8004.2144.1	0.48	-0.6
2,064,951	-		Xcc-8004.2144.1	0.48	+0.5
2,065,133	+		Xcc-8004.2144.1	0.52	-0.9
2,065,134	-		Xcc-8004.2144.1	0.52	+1.2
2,065,253	+		Xcc-8004.2144.1	0.55	+0.8
2,065,254	-		Xcc-8004.2144.1	0.55	+0.8
2,065,255	+		Xcc-8004.2144.1	0.55	-0.7
2,065,256	-		Xcc-8004.2144.1	0.55	+0.3
2,065,262	+		Xcc-8004.2144.1	0.55	+0.5
2,065,262	+		Xcc-8004.2144.1	0.55	-2.4
2,065,263	-		Xcc-8004.2144.1	0.55	-1.2
2,065,313	+		Xcc-8004.2144.1	0.56	-1.5
2,065,313	+		Xcc-8004.2144.1	0.56	+1.0
2,065,314	-		Xcc-8004.2144.1	0.56	+0.6
2,065,374	+		Xcc-8004.2144.1	0.58	+0.7
2,065,591	+		Xcc-8004.2144.1	0.62	+0.1
2,065,592	-		Xcc-8004.2144.1	0.63	-2.4
2,065,685	+		Xcc-8004.2144.1	0.65	+0.8
2,065,685	+		Xcc-8004.2144.1	0.65	+0.0
2,065,685	+		Xcc-8004.2144.1	0.65	+0.8
2,065,685	+		Xcc-8004.2144.1	0.65	-1.0
2,065,686	-		Xcc-8004.2144.1	0.65	+0.1
2,065,686	-		Xcc-8004.2144.1	0.65	+0.3
2,065,691	+		Xcc-8004.2144.1	0.65	-1.1
2,065,691	+		Xcc-8004.2144.1	0.65	-0.0
2,065,769	+		Xcc-8004.2144.1	0.67	-1.1
2,065,769	+		Xcc-8004.2144.1	0.67	+0.7
2,065,769	+		Xcc-8004.2144.1	0.67	-1.4
2,065,770	-		Xcc-8004.2144.1	0.67	+0.9
2,065,781	+		Xcc-8004.2144.1	0.67	+0.1
2,065,781	+		Xcc-8004.2144.1	0.67	+1.6
2,065,899	+		Xcc-8004.2144.1	0.70	+0.3
2,065,900	-		Xcc-8004.2144.1	0.70	-1.0
2,065,900	-		Xcc-8004.2144.1	0.70	+1.5
2,066,195	+		Xcc-8004.2144.1	0.76	-0.3
2,066,195	+		Xcc-8004.2144.1	0.76	-1.6
2,066,195	+		Xcc-8004.2144.1	0.76	-0.2
2,066,195	+		Xcc-8004.2144.1	0.76	-0.3
2,066,195	+		Xcc-8004.2144.1	0.76	+0.2
2,066,196	-		Xcc-8004.2144.1	0.76	+0.2
2,066,196	-		Xcc-8004.2144.1	0.76	-0.4
2,066,196	-		Xcc-8004.2144.1	0.76	+2.1
2,066,196	-		Xcc-8004.2144.1	0.76	-0.5
2,066,196	-		Xcc-8004.2144.1	0.76	+0.5
2,066,196	-		Xcc-8004.2144.1	0.76	-0.7
2,066,196	-		Xcc-8004.2144.1	0.76	+1.2
2,066,196	-		Xcc-8004.2144.1	0.76	+0.1
2,066,302	-		Xcc-8004.2144.1	0.79	-1.3
2,066,414	+		Xcc-8004.2144.1	0.81	-1.4
2,066,414	+		Xcc-8004.2144.1	0.81	+0.0
2,066,450	+		Xcc-8004.2144.1	0.82	-0.5
2,066,450	+		Xcc-8004.2144.1	0.82	-2.0
2,066,451	-		Xcc-8004.2144.1	0.82	-0.4
2,066,451	-		Xcc-8004.2144.1	0.82	-1.6
2,066,451	-		Xcc-8004.2144.1	0.82	+1.3
2,066,451	-		Xcc-8004.2144.1	0.82	-0.3
2,066,493	-		Xcc-8004.2144.1	0.83	-0.5
2,066,493	-		Xcc-8004.2144.1	0.83	+0.8
2,066,598	-		Xcc-8004.2144.1	0.86	-1.7
2,067,059	+				+0.9
2,067,059	+				-0.4
2,067,060	-				-1.4
2,067,060	-				+0.1
2,067,060	-				-0.1
2,067,237	+				-2.1
2,067,237	+				+0.1
2,067,373	+				+0.4
2,067,373	+				-0.3
2,067,415	+		Xcc-8004.2145.1	0.12	-3.0
2,067,416	-		Xcc-8004.2145.1	0.12	+2.9
2,067,416	-		Xcc-8004.2145.1	0.12	+0.6
2,067,581	-		Xcc-8004.2145.1	0.22	-0.4
2,067,617	-		Xcc-8004.2145.1	0.25	-1.9
2,067,619	+		Xcc-8004.2145.1	0.25	-1.9
2,067,619	+		Xcc-8004.2145.1	0.25	+0.5
2,067,625	+		Xcc-8004.2145.1	0.25	-0.2
2,067,817	+		Xcc-8004.2145.1	0.37	+0.6
2,067,817	+		Xcc-8004.2145.1	0.37	+1.1
2,067,817	+		Xcc-8004.2145.1	0.37	-0.8
2,067,818	-		Xcc-8004.2145.1	0.37	+0.1
2,067,818	-		Xcc-8004.2145.1	0.37	+0.4
2,067,818	-		Xcc-8004.2145.1	0.37	-0.5
2,067,824	-		Xcc-8004.2145.1	0.38	+1.2
2,067,848	-		Xcc-8004.2145.1	0.39	+0.9
2,067,848	-		Xcc-8004.2145.1	0.39	+0.4
2,067,959	-		Xcc-8004.2145.1	0.46	+0.7
2,067,959	-		Xcc-8004.2145.1	0.46	-1.2
2,067,961	+		Xcc-8004.2145.1	0.46	-0.9
2,067,962	-		Xcc-8004.2145.1	0.46	-0.7
2,067,970	+		Xcc-8004.2145.1	0.47	+0.5
2,067,971	-		Xcc-8004.2145.1	0.47	-0.4
2,067,971	-		Xcc-8004.2145.1	0.47	-0.1
2,068,036	+		Xcc-8004.2145.1	0.51	+0.2
2,068,037	-		Xcc-8004.2145.1	0.51	-1.1
2,068,147	+		Xcc-8004.2145.1	0.58	-2.3
2,068,147	+		Xcc-8004.2145.1	0.58	-0.2
2,068,148	-		Xcc-8004.2145.1	0.58	+2.8
2,068,156	+		Xcc-8004.2145.1	0.58	-0.4
2,068,157	-		Xcc-8004.2145.1	0.58	+0.2
2,068,157	-		Xcc-8004.2145.1	0.58	-0.1