Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1404.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1403.1 and Xcc-8004.1404.1 overlap by 23 nucleotidesXcc-8004.1404.1 and Xcc-8004.1405.1 overlap by 4 nucleotides Xcc-8004.1403.1: Xcc-8004.1403.1 - Vibrioferrin amide bond forming protein PvsD @ Siderophore synthetase superfamily, group A, at 1,330,930 to 1,332,699 Xcc-8004.1403.1 Xcc-8004.1404.1: Xcc-8004.1404.1 - Vibrioferrin membrane-spanning transport protein PvsC, at 1,332,677 to 1,333,855 Xcc-8004.1404.1 Xcc-8004.1405.1: Xcc-8004.1405.1 - Vibrioferrin amide bond forming protein PvsB @ Siderophore synthetase superfamily, group B, at 1,333,852 to 1,335,654 Xcc-8004.1405.1 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.863 kb on + strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1at 1332.035 kb on + strand, within Xcc-8004.1403.1at 1332.125 kb on + strand, within Xcc-8004.1403.1at 1332.125 kb on + strand, within Xcc-8004.1403.1at 1332.126 kb on - strand, within Xcc-8004.1403.1at 1332.256 kb on - strand, within Xcc-8004.1403.1at 1332.575 kb on + strandat 1332.576 kb on - strandat 1332.620 kb on + strandat 1333.090 kb on - strand, within Xcc-8004.1404.1at 1333.375 kb on - strand, within Xcc-8004.1404.1at 1333.452 kb on + strand, within Xcc-8004.1404.1at 1333.453 kb on - strand, within Xcc-8004.1404.1at 1333.510 kb on - strand, within Xcc-8004.1404.1at 1333.656 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1334.004 kb on - strandat 1334.114 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.358 kb on - strand, within Xcc-8004.1405.1at 1334.358 kb on - strand, within Xcc-8004.1405.1at 1334.448 kb on - strand, within Xcc-8004.1405.1at 1334.595 kb on - strand, within Xcc-8004.1405.1at 1334.595 kb on - strand, within Xcc-8004.1405.1at 1334.720 kb on + strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,331,822 + Xcc-8004.1403.1 0.50 -2.2
1,331,822 + Xcc-8004.1403.1 0.50 -0.4
1,331,822 + Xcc-8004.1403.1 0.50 -0.1
1,331,823 - Xcc-8004.1403.1 0.50 -0.8
1,331,823 - Xcc-8004.1403.1 0.50 -2.0
1,331,863 + Xcc-8004.1403.1 0.53 -0.2
1,331,864 - Xcc-8004.1403.1 0.53 -0.7
1,331,864 - Xcc-8004.1403.1 0.53 -0.6
1,331,864 - Xcc-8004.1403.1 0.53 +0.7
1,331,864 - Xcc-8004.1403.1 0.53 +0.6
1,331,883 - Xcc-8004.1403.1 0.54 +0.9
1,331,883 - Xcc-8004.1403.1 0.54 -0.1
1,331,900 + Xcc-8004.1403.1 0.55 -0.0
1,331,900 + Xcc-8004.1403.1 0.55 +0.1
1,331,900 + Xcc-8004.1403.1 0.55 +0.6
1,331,901 - Xcc-8004.1403.1 0.55 -0.6
1,331,901 - Xcc-8004.1403.1 0.55 -0.3
1,332,035 + Xcc-8004.1403.1 0.62 +1.6
1,332,125 + Xcc-8004.1403.1 0.68 -0.6
1,332,125 + Xcc-8004.1403.1 0.68 -0.4
1,332,126 - Xcc-8004.1403.1 0.68 -0.0
1,332,256 - Xcc-8004.1403.1 0.75 +1.0
1,332,575 + -0.6
1,332,576 - -0.6
1,332,620 + -2.3
1,333,090 - Xcc-8004.1404.1 0.35 +2.3
1,333,375 - Xcc-8004.1404.1 0.59 -0.2
1,333,452 + Xcc-8004.1404.1 0.66 -1.9
1,333,453 - Xcc-8004.1404.1 0.66 -1.7
1,333,510 - Xcc-8004.1404.1 0.71 +0.7
1,333,656 + Xcc-8004.1404.1 0.83 -0.1
1,333,719 + Xcc-8004.1404.1 0.88 +0.2
1,333,719 + Xcc-8004.1404.1 0.88 +0.7
1,333,719 + Xcc-8004.1404.1 0.88 -0.2
1,333,720 - Xcc-8004.1404.1 0.88 -0.6
1,333,720 - Xcc-8004.1404.1 0.88 -0.0
1,333,720 - Xcc-8004.1404.1 0.88 -1.7
1,333,720 - Xcc-8004.1404.1 0.88 +0.3
1,333,720 - Xcc-8004.1404.1 0.88 -1.6
1,333,720 - Xcc-8004.1404.1 0.88 -0.4
1,333,720 - Xcc-8004.1404.1 0.88 +3.1
1,333,720 - Xcc-8004.1404.1 0.88 -0.1
1,334,004 - +0.3
1,334,114 + Xcc-8004.1405.1 0.15 -3.0
1,334,357 + Xcc-8004.1405.1 0.28 +0.2
1,334,357 + Xcc-8004.1405.1 0.28 -0.3
1,334,357 + Xcc-8004.1405.1 0.28 -0.0
1,334,357 + Xcc-8004.1405.1 0.28 +0.9
1,334,357 + Xcc-8004.1405.1 0.28 +1.3
1,334,357 + Xcc-8004.1405.1 0.28 -1.0
1,334,358 - Xcc-8004.1405.1 0.28 -1.0
1,334,358 - Xcc-8004.1405.1 0.28 -1.1
1,334,448 - Xcc-8004.1405.1 0.33 -0.4
1,334,595 - Xcc-8004.1405.1 0.41 +0.6
1,334,595 - Xcc-8004.1405.1 0.41 -0.3
1,334,720 + Xcc-8004.1405.1 0.48 -1.1
1,334,721 - Xcc-8004.1405.1 0.48 -1.1
1,334,721 - Xcc-8004.1405.1 0.48 -2.3
1,334,721 - Xcc-8004.1405.1 0.48 -0.7
1,334,855 + Xcc-8004.1405.1 0.56 -0.1
1,334,855 + Xcc-8004.1405.1 0.56 -1.1

Or see this region's nucleotide sequence