Strain Fitness in Pantoea sp. MT58 around IAI47_08220

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
1,736,689	-		IAI47_08215	0.11	+0.4
1,736,846	+		IAI47_08215	0.25	+0.2
1,736,847	-		IAI47_08215	0.25	-0.6
1,736,938	+		IAI47_08215	0.34	-0.0
1,736,938	+		IAI47_08215	0.34	+0.7
1,736,938	+		IAI47_08215	0.34	-1.3
1,736,938	+		IAI47_08215	0.34	+0.1
1,736,938	+		IAI47_08215	0.34	+1.0
1,736,938	+		IAI47_08215	0.34	-1.2
1,736,939	-		IAI47_08215	0.34	-0.7
1,736,946	+		IAI47_08215	0.34	+1.3
1,736,946	+		IAI47_08215	0.34	+1.3
1,736,947	-		IAI47_08215	0.34	+0.9
1,736,947	-		IAI47_08215	0.34	+1.2
1,736,947	-		IAI47_08215	0.34	-0.4
1,736,947	-		IAI47_08215	0.34	-0.4
1,736,966	+		IAI47_08215	0.36	+0.2
1,736,967	-		IAI47_08215	0.36	-0.4
1,736,967	-		IAI47_08215	0.36	-0.7
1,736,969	-		IAI47_08215	0.36	-0.4
1,736,969	-		IAI47_08215	0.36	-0.0
1,736,969	-		IAI47_08215	0.36	-0.4
1,736,969	-		IAI47_08215	0.36	+0.4
1,736,975	+		IAI47_08215	0.37	-0.7
1,736,975	+		IAI47_08215	0.37	-0.4
1,736,975	+		IAI47_08215	0.37	-1.6
1,736,975	+		IAI47_08215	0.37	-0.4
1,736,975	+		IAI47_08215	0.37	+0.6
1,736,975	+		IAI47_08215	0.37	+1.3
1,736,975	+		IAI47_08215	0.37	-1.6
1,736,976	-		IAI47_08215	0.37	+0.1
1,736,976	-		IAI47_08215	0.37	+1.7
1,736,976	-		IAI47_08215	0.37	+0.2
1,736,976	-		IAI47_08215	0.37	-1.1
1,737,008	-		IAI47_08215	0.40	-0.3
1,737,023	-		IAI47_08215	0.41	+0.5
1,737,023	-		IAI47_08215	0.41	+1.3
1,737,086	+		IAI47_08215	0.47	-0.8
1,737,089	+		IAI47_08215	0.47	-1.0
1,737,089	+		IAI47_08215	0.47	+1.5
1,737,089	+		IAI47_08215	0.47	-0.4
1,737,089	+		IAI47_08215	0.47	+1.0
1,737,089	+		IAI47_08215	0.47	-1.2
1,737,090	-		IAI47_08215	0.47	+1.2
1,737,090	-		IAI47_08215	0.47	-0.6
1,737,090	-		IAI47_08215	0.47	-0.2
1,737,090	-		IAI47_08215	0.47	+0.5
1,737,161	+		IAI47_08215	0.53	+0.8
1,737,161	+		IAI47_08215	0.53	-0.7
1,737,161	+		IAI47_08215	0.53	-0.9
1,737,161	+		IAI47_08215	0.53	-0.3
1,737,185	-		IAI47_08215	0.56	+0.3
1,737,185	-		IAI47_08215	0.56	+0.6
1,737,254	+		IAI47_08215	0.62	-0.4
1,737,255	-		IAI47_08215	0.62	-1.0
1,737,255	-		IAI47_08215	0.62	-0.2
1,737,255	-		IAI47_08215	0.62	-0.7
1,737,262	+		IAI47_08215	0.63	+0.7
1,737,262	+		IAI47_08215	0.63	+2.8
1,737,271	+		IAI47_08215	0.63	-0.6
1,737,325	+		IAI47_08215	0.68	+2.3
1,737,326	-		IAI47_08215	0.68	-1.2
1,737,326	-		IAI47_08215	0.68	-1.3
1,737,398	+		IAI47_08215	0.75	+0.4
1,737,398	+		IAI47_08215	0.75	-0.5
1,737,398	+		IAI47_08215	0.75	+0.5
1,737,398	+		IAI47_08215	0.75	+0.1
1,737,399	-		IAI47_08215	0.75	-1.2
1,737,465	+		IAI47_08215	0.81	+2.1
1,737,505	+		IAI47_08215	0.84	-0.8
1,737,505	+		IAI47_08215	0.84	-0.4
1,737,505	+		IAI47_08215	0.84	+1.7
1,737,506	-		IAI47_08215	0.84	-1.8
1,737,506	-		IAI47_08215	0.84	+1.3
1,737,506	-		IAI47_08215	0.84	-0.6
1,737,506	-		IAI47_08215	0.84	-0.9
1,737,517	+		IAI47_08215	0.85	-0.9
1,737,517	+		IAI47_08215	0.85	-0.0
1,737,517	+		IAI47_08215	0.85	-1.2
1,737,518	-		IAI47_08215	0.85	+0.4
1,737,578	+				+1.5
1,737,651	+				+2.2
1,737,651	+				+1.1
1,737,651	+				-0.1
1,737,677	+				-0.9
1,737,678	-				+0.3
1,737,856	+		IAI47_08220	0.14	+0.3
1,737,856	+		IAI47_08220	0.14	-1.1
1,737,930	+		IAI47_08220	0.19	+1.0
1,737,931	-		IAI47_08220	0.19	-0.9
1,737,931	-		IAI47_08220	0.19	-0.2
1,737,936	+		IAI47_08220	0.20	+0.4
1,737,936	+		IAI47_08220	0.20	+0.6
1,737,937	-		IAI47_08220	0.20	-0.2
1,737,965	+		IAI47_08220	0.22	-1.0
1,737,965	+		IAI47_08220	0.22	-0.9
1,737,966	-		IAI47_08220	0.22	+0.1
1,737,966	-		IAI47_08220	0.22	-0.3
1,737,979	-		IAI47_08220	0.23	-1.2
1,738,021	-		IAI47_08220	0.27	+0.7
1,738,021	-		IAI47_08220	0.27	-0.3
1,738,077	+		IAI47_08220	0.31	+0.2
1,738,077	+		IAI47_08220	0.31	-1.0
1,738,078	-		IAI47_08220	0.31	+1.2
1,738,089	+		IAI47_08220	0.32	-0.0
1,738,089	+		IAI47_08220	0.32	+0.3
1,738,089	+		IAI47_08220	0.32	+0.3
1,738,089	+		IAI47_08220	0.32	+1.1
1,738,089	+		IAI47_08220	0.32	+1.3
1,738,089	+		IAI47_08220	0.32	+1.1
1,738,090	-		IAI47_08220	0.32	-2.3
1,738,090	-		IAI47_08220	0.32	+0.8
1,738,090	-		IAI47_08220	0.32	-1.2
1,738,090	-		IAI47_08220	0.32	+1.6
1,738,090	-		IAI47_08220	0.32	+2.1
1,738,090	-		IAI47_08220	0.32	-0.7
1,738,090	-		IAI47_08220	0.32	-0.7
1,738,090	-		IAI47_08220	0.32	+1.5
1,738,091	-		IAI47_08220	0.32	-1.4
1,738,236	+		IAI47_08220	0.43	+0.3
1,738,237	-		IAI47_08220	0.43	-0.1
1,738,237	-		IAI47_08220	0.43	+1.1
1,738,248	+		IAI47_08220	0.44	-0.4
1,738,249	-		IAI47_08220	0.44	+1.6
1,738,249	-		IAI47_08220	0.44	-0.1
1,738,284	+		IAI47_08220	0.47	+1.4
1,738,284	+		IAI47_08220	0.47	+0.2
1,738,284	+		IAI47_08220	0.47	+0.1
1,738,284	+		IAI47_08220	0.47	-1.2
1,738,284	+		IAI47_08220	0.47	-1.2
1,738,284	+		IAI47_08220	0.47	+0.9
1,738,284	+		IAI47_08220	0.47	+0.3
1,738,284	+		IAI47_08220	0.47	-0.8
1,738,284	+		IAI47_08220	0.47	-1.1
1,738,285	-		IAI47_08220	0.47	+0.3
1,738,285	-		IAI47_08220	0.47	+0.3
1,738,285	-		IAI47_08220	0.47	+0.3
1,738,285	-		IAI47_08220	0.47	+1.8
1,738,285	-		IAI47_08220	0.47	-0.2
1,738,304	+		IAI47_08220	0.49	-0.6
1,738,304	+		IAI47_08220	0.49	-0.9
1,738,305	-		IAI47_08220	0.49	-0.0
1,738,326	+		IAI47_08220	0.50	+0.8
1,738,327	-		IAI47_08220	0.50	-0.1
1,738,386	+		IAI47_08220	0.55	+0.9
1,738,386	+		IAI47_08220	0.55	-0.6
1,738,387	-		IAI47_08220	0.55	+0.2
1,738,387	-		IAI47_08220	0.55	+0.4
1,738,387	-		IAI47_08220	0.55	-0.6
1,738,387	-		IAI47_08220	0.55	+0.0
1,738,428	+		IAI47_08220	0.58	+0.6
1,738,428	+		IAI47_08220	0.58	+0.8
1,738,429	-		IAI47_08220	0.58	-0.2
1,738,429	-		IAI47_08220	0.58	+0.5
1,738,492	+		IAI47_08220	0.63	+2.6
1,738,492	+		IAI47_08220	0.63	-0.1
1,738,492	+		IAI47_08220	0.63	+1.2
1,738,492	+		IAI47_08220	0.63	-0.5
1,738,493	-		IAI47_08220	0.63	-0.0
1,738,493	-		IAI47_08220	0.63	-0.4
1,738,502	+		IAI47_08220	0.64	+0.4
1,738,503	-		IAI47_08220	0.64	-0.1
1,738,503	-		IAI47_08220	0.64	+0.6
1,738,509	+		IAI47_08220	0.65	-0.0
1,738,509	+		IAI47_08220	0.65	+0.4
1,738,563	+		IAI47_08220	0.69	+3.0
1,738,564	-		IAI47_08220	0.69	+1.6
1,738,630	+		IAI47_08220	0.74	-1.2
1,738,631	-		IAI47_08220	0.74	+0.3
1,738,713	+		IAI47_08220	0.81	+0.4
1,738,736	-		IAI47_08220	0.82	-0.2
1,738,741	+		IAI47_08220	0.83	+1.0
1,738,741	+		IAI47_08220	0.83	+0.6
1,738,741	+		IAI47_08220	0.83	+0.1
1,738,741	+		IAI47_08220	0.83	+0.6
1,738,742	-		IAI47_08220	0.83	-0.0
1,738,752	+		IAI47_08220	0.84	+0.0
1,738,752	+		IAI47_08220	0.84	+0.8
1,738,752	+		IAI47_08220	0.84	-0.8
1,738,753	-		IAI47_08220	0.84	+0.0
1,738,753	-		IAI47_08220	0.84	-0.6
1,738,784	+		IAI47_08220	0.86	+0.5
1,738,784	+		IAI47_08220	0.86	-0.9
1,738,784	+		IAI47_08220	0.86	-0.6
1,738,785	-		IAI47_08220	0.86	-1.2
1,738,799	-		IAI47_08220	0.87	+0.3
1,738,867	+				+1.2
1,738,867	+				+2.1
1,738,867	+				-0.8
1,738,867	+				-0.3
1,738,868	-				-0.0
1,738,869	+				-1.1
1,738,869	+				-0.5
1,738,869	+				+0.3
1,738,869	+				-1.7
1,738,870	-				-0.6
1,738,870	-				+2.1
1,738,870	-				-1.1
1,738,891	+				-0.5
1,738,930	+				-0.4
1,738,931	-				-1.4
1,738,931	-				+0.7
1,738,934	+				-0.0
1,738,934	+				+0.4
1,738,934	+				+2.0
1,738,934	+				+0.6
1,738,934	+				-0.0
1,739,021	+				+0.3
1,739,021	+				-1.0
1,739,022	-				-0.2
1,739,024	+				+0.2
1,739,068	-				+1.3
1,739,079	+				-0.8
1,739,079	+				+0.4
1,739,079	+				+1.3
1,739,115	+				+0.8
1,739,124	+				+0.1
1,739,125	-				+1.2
1,739,160	+				+0.0
1,739,167	-				-0.9
1,739,201	-				-1.4
1,739,203	+				+0.7
1,739,204	-				-0.7
1,739,219	+				+0.0
1,739,219	+				+0.7
1,739,220	-				-1.0
1,739,220	-				+0.2
1,739,220	-				-1.6
1,739,220	-				-1.2
1,739,231	+				+0.8
1,739,232	-				-0.6
1,739,232	-				-0.5
1,739,232	-				-0.2
1,739,232	-				-1.5
1,739,232	-				-0.7
1,739,266	-				+0.1
1,739,285	+				-0.1
1,739,286	-				-1.4
1,739,289	+				+2.0
1,739,289	+				-0.6
1,739,290	-				-1.2
1,739,360	+				-2.0
1,739,360	+				+0.1
1,739,361	-				-0.7
1,739,411	-				-1.0
1,739,411	-				-3.1
1,739,411	-				-0.3
1,739,417	+				+0.7
1,739,418	-				-0.1
1,739,438	+				-0.1
1,739,439	-				+0.5
1,739,439	-				-1.8
1,739,461	+				+1.8
1,739,475	-				-1.5
1,739,531	+				+0.1
1,739,532	-				+1.4
1,739,645	+		IAI47_08225	0.14	+0.3
1,739,645	+		IAI47_08225	0.14	-0.7
1,739,645	+		IAI47_08225	0.14	-0.0
1,739,645	+		IAI47_08225	0.14	+0.2
1,739,645	+		IAI47_08225	0.14	-0.3
1,739,645	+		IAI47_08225	0.14	-0.5
1,739,645	+		IAI47_08225	0.14	-0.6
1,739,645	+		IAI47_08225	0.14	-0.2
1,739,646	-		IAI47_08225	0.14	-0.4
1,739,646	-		IAI47_08225	0.14	+1.3
1,739,646	-		IAI47_08225	0.14	-1.4
1,739,681	+		IAI47_08225	0.19	+0.9
1,739,711	+		IAI47_08225	0.23	-1.4
1,739,711	+		IAI47_08225	0.23	-0.5
1,739,712	-		IAI47_08225	0.23	-1.0
1,739,730	+		IAI47_08225	0.25	-0.2
1,739,731	-		IAI47_08225	0.25	-1.6
1,739,735	+		IAI47_08225	0.26	+2.3
1,739,735	+		IAI47_08225	0.26	+0.5
1,739,735	+		IAI47_08225	0.26	-1.1
1,739,736	-		IAI47_08225	0.26	-2.7
1,739,736	-		IAI47_08225	0.26	+0.0
1,739,743	+		IAI47_08225	0.27	+1.7
1,739,744	-		IAI47_08225	0.27	-1.0
1,739,744	-		IAI47_08225	0.27	-0.0
1,739,744	-		IAI47_08225	0.27	-1.4
1,739,789	+		IAI47_08225	0.33	-0.7
1,739,831	+		IAI47_08225	0.38	-0.4
1,739,834	+		IAI47_08225	0.38	-1.8
1,739,835	-		IAI47_08225	0.38	-0.2
1,739,835	-		IAI47_08225	0.38	-1.4
1,739,853	-		IAI47_08225	0.41	+0.8
1,739,869	+		IAI47_08225	0.43	+0.6
1,739,869	+		IAI47_08225	0.43	-0.6
1,739,870	-		IAI47_08225	0.43	-0.1
1,739,870	-		IAI47_08225	0.43	-0.3
1,739,910	-		IAI47_08225	0.48	-1.4
1,739,931	+		IAI47_08225	0.51	-0.3
1,739,931	+		IAI47_08225	0.51	+1.2
1,739,946	+		IAI47_08225	0.52	-2.2
1,739,946	+		IAI47_08225	0.52	+0.8