Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08960 and PGA1_c08970 are separated by 19 nucleotides PGA1_c08970 and PGA1_c08980 are separated by 205 nucleotides PGA1_c08980 and PGA1_c08990 are separated by 142 nucleotides PGA1_c08990 and PGA1_c09000 overlap by 2 nucleotides
PGA1_c08960: PGA1_c08960 - DNA repair endonuclease mmcB (DUF1052) <small>(from data)</small>, at 925,190 to 925,645
_c08960
PGA1_c08970: PGA1_c08970 - hypothetical protein, at 925,665 to 925,853
_c08970
PGA1_c08980: PGA1_c08980 - tRNA-His, at 926,059 to 926,135
_c08980
PGA1_c08990: PGA1_c08990 - hypothetical protein, at 926,278 to 926,592
_c08990
PGA1_c09000: PGA1_c09000 - ribosomal large subunit pseudouridine synthase D, at 926,591 to 927,625
_c09000
Position (kb) 926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 925.321 kb on + strand, within PGA1_c08960 at 925.333 kb on + strand, within PGA1_c08960 at 925.338 kb on + strand, within PGA1_c08960 at 925.346 kb on - strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.393 kb on + strand, within PGA1_c08960 at 925.397 kb on + strand, within PGA1_c08960 at 925.398 kb on + strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.406 kb on - strand, within PGA1_c08960 at 925.433 kb on + strand, within PGA1_c08960 at 925.472 kb on + strand, within PGA1_c08960 at 925.625 kb on + strand at 925.632 kb on - strand at 925.633 kb on - strand at 925.699 kb on + strand, within PGA1_c08970 at 925.840 kb on + strand at 925.873 kb on - strand at 925.880 kb on - strand at 925.901 kb on + strand at 925.929 kb on + strand at 925.944 kb on + strand at 925.952 kb on - strand at 925.952 kb on - strand at 925.963 kb on - strand at 925.963 kb on - strand at 926.233 kb on + strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.293 kb on - strand at 926.293 kb on - strand at 926.340 kb on - strand, within PGA1_c08990 at 926.439 kb on + strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.596 kb on - strand at 926.692 kb on + strand at 926.971 kb on + strand, within PGA1_c09000 at 926.989 kb on + strand, within PGA1_c09000 at 927.011 kb on - strand, within PGA1_c09000 at 927.030 kb on + strand at 927.038 kb on - strand, within PGA1_c09000 at 927.068 kb on + strand, within PGA1_c09000 at 927.129 kb on + strand, within PGA1_c09000 at 927.137 kb on - strand, within PGA1_c09000 at 927.270 kb on - strand, within PGA1_c09000 at 927.270 kb on - strand, within PGA1_c09000 at 927.337 kb on + strand, within PGA1_c09000 at 927.366 kb on + strand, within PGA1_c09000 at 927.405 kb on + strand, within PGA1_c09000 at 927.406 kb on - strand, within PGA1_c09000 at 927.528 kb on + strand at 927.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 925,321 + PGA1_c08960 0.29 -1.0 925,333 + PGA1_c08960 0.31 +0.0 925,338 + PGA1_c08960 0.32 -0.4 925,346 - PGA1_c08960 0.34 +0.6 925,348 + PGA1_c08960 0.35 +0.7 925,348 + PGA1_c08960 0.35 -0.6 925,393 + PGA1_c08960 0.45 -0.7 925,397 + PGA1_c08960 0.45 -0.7 925,398 + PGA1_c08960 0.46 +0.7 925,401 - PGA1_c08960 0.46 -0.6 925,401 - PGA1_c08960 0.46 -0.5 925,406 - PGA1_c08960 0.47 +0.4 925,433 + PGA1_c08960 0.53 +0.3 925,472 + PGA1_c08960 0.62 -0.0 925,625 + +0.3 925,632 - -1.0 925,633 - -0.1 925,699 + PGA1_c08970 0.18 +0.2 925,840 + +0.6 925,873 - -0.2 925,880 - -0.1 925,901 + -1.7 925,929 + +0.5 925,944 + -0.1 925,952 - -0.1 925,952 - -1.9 925,963 - +0.1 925,963 - -0.2 926,233 + +0.3 926,243 - -0.4 926,243 - -1.4 926,243 - +0.9 926,243 - +0.6 926,243 - +0.3 926,243 - +0.9 926,243 - +0.9 926,293 - -1.7 926,293 - -0.5 926,340 - PGA1_c08990 0.20 -0.3 926,439 + PGA1_c08990 0.51 +0.0 926,484 - PGA1_c08990 0.65 -0.9 926,484 - PGA1_c08990 0.65 -1.1 926,596 - -2.2 926,692 + -0.1 926,971 + PGA1_c09000 0.37 -1.2 926,989 + PGA1_c09000 0.38 -2.5 927,011 - PGA1_c09000 0.41 -0.5 927,030 + +0.0 927,038 - PGA1_c09000 0.43 +0.0 927,068 + PGA1_c09000 0.46 -0.9 927,129 + PGA1_c09000 0.52 -1.6 927,137 - PGA1_c09000 0.53 -2.0 927,270 - PGA1_c09000 0.66 -0.2 927,270 - PGA1_c09000 0.66 -2.3 927,337 + PGA1_c09000 0.72 -0.7 927,366 + PGA1_c09000 0.75 -0.5 927,405 + PGA1_c09000 0.79 -2.4 927,406 - PGA1_c09000 0.79 -1.6 927,528 + -2.3 927,547 - -2.8
Or see this region's nucleotide sequence