Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36070 and PGA1_c36090 are separated by 239 nucleotides PGA1_c36090 and PGA1_c36100 are separated by 63 nucleotides
PGA1_c36070: PGA1_c36070 - undecaprenyl-diphosphatase UppP, at 3,772,825 to 3,773,631
_c36070
PGA1_c36090: PGA1_c36090 - glutamate synthase [NADPH] small chain, at 3,773,871 to 3,775,316
_c36090
PGA1_c36100: PGA1_c36100 - glutamate synthase [NADPH] large chain, at 3,775,380 to 3,779,912
_c36100
Position (kb)
3773
3774
3775
3776 Strain fitness (log2 ratio)
-2
-1
0
1 at 3773.850 kb on + strand at 3773.864 kb on - strand at 3773.870 kb on - strand at 3773.896 kb on - strand at 3773.990 kb on + strand at 3774.044 kb on + strand, within PGA1_c36090 at 3774.049 kb on + strand, within PGA1_c36090 at 3774.052 kb on - strand, within PGA1_c36090 at 3774.052 kb on - strand, within PGA1_c36090 at 3774.196 kb on - strand, within PGA1_c36090 at 3774.264 kb on + strand, within PGA1_c36090 at 3774.272 kb on - strand, within PGA1_c36090 at 3774.277 kb on + strand, within PGA1_c36090 at 3774.278 kb on - strand, within PGA1_c36090 at 3774.280 kb on + strand, within PGA1_c36090 at 3774.339 kb on + strand, within PGA1_c36090 at 3774.339 kb on + strand, within PGA1_c36090 at 3774.341 kb on + strand, within PGA1_c36090 at 3774.347 kb on - strand, within PGA1_c36090 at 3774.347 kb on - strand, within PGA1_c36090 at 3774.347 kb on - strand, within PGA1_c36090 at 3774.347 kb on - strand, within PGA1_c36090 at 3774.381 kb on + strand, within PGA1_c36090 at 3774.389 kb on - strand, within PGA1_c36090 at 3774.389 kb on - strand, within PGA1_c36090 at 3774.389 kb on - strand, within PGA1_c36090 at 3774.389 kb on - strand, within PGA1_c36090 at 3774.394 kb on + strand, within PGA1_c36090 at 3774.397 kb on - strand, within PGA1_c36090 at 3774.416 kb on + strand, within PGA1_c36090 at 3774.421 kb on + strand, within PGA1_c36090 at 3774.424 kb on - strand, within PGA1_c36090 at 3774.426 kb on + strand, within PGA1_c36090 at 3774.431 kb on + strand, within PGA1_c36090 at 3774.455 kb on - strand, within PGA1_c36090 at 3774.534 kb on + strand, within PGA1_c36090 at 3774.534 kb on + strand, within PGA1_c36090 at 3774.534 kb on + strand, within PGA1_c36090 at 3774.534 kb on + strand, within PGA1_c36090 at 3774.539 kb on + strand, within PGA1_c36090 at 3774.605 kb on - strand, within PGA1_c36090 at 3774.736 kb on - strand, within PGA1_c36090 at 3774.777 kb on + strand, within PGA1_c36090 at 3774.777 kb on + strand, within PGA1_c36090 at 3774.777 kb on + strand, within PGA1_c36090 at 3774.785 kb on - strand, within PGA1_c36090 at 3774.785 kb on - strand, within PGA1_c36090 at 3774.787 kb on + strand, within PGA1_c36090 at 3774.877 kb on - strand, within PGA1_c36090 at 3774.953 kb on + strand, within PGA1_c36090 at 3774.953 kb on + strand, within PGA1_c36090 at 3774.953 kb on + strand, within PGA1_c36090 at 3774.961 kb on - strand, within PGA1_c36090 at 3775.000 kb on - strand, within PGA1_c36090 at 3775.015 kb on + strand, within PGA1_c36090 at 3775.072 kb on - strand, within PGA1_c36090 at 3775.126 kb on - strand, within PGA1_c36090 at 3775.192 kb on + strand at 3775.195 kb on + strand at 3775.244 kb on + strand at 3775.252 kb on - strand at 3775.269 kb on + strand at 3775.311 kb on + strand at 3775.335 kb on - strand at 3775.355 kb on - strand at 3775.379 kb on - strand at 3775.418 kb on + strand at 3775.477 kb on - strand at 3775.483 kb on + strand at 3775.483 kb on + strand at 3775.483 kb on + strand at 3775.491 kb on - strand at 3775.491 kb on - strand at 3775.529 kb on + strand at 3775.537 kb on - strand at 3775.737 kb on + strand at 3775.745 kb on - strand at 3775.818 kb on + strand at 3775.826 kb on - strand at 3775.836 kb on - strand, within PGA1_c36100 at 3775.893 kb on + strand, within PGA1_c36100 at 3775.894 kb on - strand, within PGA1_c36100 at 3775.980 kb on + strand, within PGA1_c36100 at 3776.031 kb on - strand, within PGA1_c36100 at 3776.051 kb on + strand, within PGA1_c36100 at 3776.059 kb on - strand, within PGA1_c36100 at 3776.078 kb on + strand, within PGA1_c36100 at 3776.148 kb on - strand, within PGA1_c36100 at 3776.180 kb on + strand, within PGA1_c36100 at 3776.237 kb on - strand, within PGA1_c36100 at 3776.267 kb on + strand, within PGA1_c36100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,773,850 + +0.2 3,773,864 - -1.7 3,773,870 - +0.3 3,773,896 - -0.9 3,773,990 + -1.5 3,774,044 + PGA1_c36090 0.12 +0.1 3,774,049 + PGA1_c36090 0.12 -2.2 3,774,052 - PGA1_c36090 0.13 -0.9 3,774,052 - PGA1_c36090 0.13 -0.5 3,774,196 - PGA1_c36090 0.22 -0.5 3,774,264 + PGA1_c36090 0.27 -1.5 3,774,272 - PGA1_c36090 0.28 -0.0 3,774,277 + PGA1_c36090 0.28 -1.2 3,774,278 - PGA1_c36090 0.28 -1.7 3,774,280 + PGA1_c36090 0.28 +0.7 3,774,339 + PGA1_c36090 0.32 -1.5 3,774,339 + PGA1_c36090 0.32 -0.5 3,774,341 + PGA1_c36090 0.33 +0.1 3,774,347 - PGA1_c36090 0.33 -0.1 3,774,347 - PGA1_c36090 0.33 -0.5 3,774,347 - PGA1_c36090 0.33 -0.4 3,774,347 - PGA1_c36090 0.33 -1.1 3,774,381 + PGA1_c36090 0.35 -2.1 3,774,389 - PGA1_c36090 0.36 -2.1 3,774,389 - PGA1_c36090 0.36 +0.5 3,774,389 - PGA1_c36090 0.36 -1.2 3,774,389 - PGA1_c36090 0.36 -0.1 3,774,394 + PGA1_c36090 0.36 +0.1 3,774,397 - PGA1_c36090 0.36 -0.2 3,774,416 + PGA1_c36090 0.38 -1.7 3,774,421 + PGA1_c36090 0.38 -0.2 3,774,424 - PGA1_c36090 0.38 -0.7 3,774,426 + PGA1_c36090 0.38 -0.8 3,774,431 + PGA1_c36090 0.39 +0.5 3,774,455 - PGA1_c36090 0.40 +0.1 3,774,534 + PGA1_c36090 0.46 -0.5 3,774,534 + PGA1_c36090 0.46 -0.6 3,774,534 + PGA1_c36090 0.46 -0.7 3,774,534 + PGA1_c36090 0.46 -1.6 3,774,539 + PGA1_c36090 0.46 -0.3 3,774,605 - PGA1_c36090 0.51 -0.7 3,774,736 - PGA1_c36090 0.60 -1.5 3,774,777 + PGA1_c36090 0.63 -0.8 3,774,777 + PGA1_c36090 0.63 -0.9 3,774,777 + PGA1_c36090 0.63 -0.9 3,774,785 - PGA1_c36090 0.63 -1.7 3,774,785 - PGA1_c36090 0.63 -0.0 3,774,787 + PGA1_c36090 0.63 -0.9 3,774,877 - PGA1_c36090 0.70 -0.6 3,774,953 + PGA1_c36090 0.75 -2.2 3,774,953 + PGA1_c36090 0.75 -0.1 3,774,953 + PGA1_c36090 0.75 -0.1 3,774,961 - PGA1_c36090 0.75 -1.4 3,775,000 - PGA1_c36090 0.78 -0.6 3,775,015 + PGA1_c36090 0.79 -1.1 3,775,072 - PGA1_c36090 0.83 -0.1 3,775,126 - PGA1_c36090 0.87 +0.4 3,775,192 + -1.3 3,775,195 + -0.4 3,775,244 + -1.0 3,775,252 - -1.5 3,775,269 + -0.9 3,775,311 + +0.9 3,775,335 - -0.7 3,775,355 - +0.1 3,775,379 - +0.6 3,775,418 + -1.4 3,775,477 - -0.7 3,775,483 + -0.3 3,775,483 + -1.1 3,775,483 + +1.0 3,775,491 - -1.6 3,775,491 - -1.9 3,775,529 + -1.9 3,775,537 - -1.8 3,775,737 + -0.2 3,775,745 - -1.2 3,775,818 + +0.0 3,775,826 - -1.0 3,775,836 - PGA1_c36100 0.10 -1.4 3,775,893 + PGA1_c36100 0.11 -1.1 3,775,894 - PGA1_c36100 0.11 -0.2 3,775,980 + PGA1_c36100 0.13 +0.5 3,776,031 - PGA1_c36100 0.14 -2.3 3,776,051 + PGA1_c36100 0.15 +0.6 3,776,059 - PGA1_c36100 0.15 -2.5 3,776,078 + PGA1_c36100 0.15 -0.5 3,776,148 - PGA1_c36100 0.17 +0.8 3,776,180 + PGA1_c36100 0.18 +0.2 3,776,237 - PGA1_c36100 0.19 -0.4 3,776,267 + PGA1_c36100 0.20 -0.3
Or see this region's nucleotide sequence