Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36090

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c36070 and PGA1_c36090 are separated by 239 nucleotidesPGA1_c36090 and PGA1_c36100 are separated by 63 nucleotides PGA1_c36070: PGA1_c36070 - undecaprenyl-diphosphatase UppP, at 3,772,825 to 3,773,631 _c36070 PGA1_c36090: PGA1_c36090 - glutamate synthase [NADPH] small chain, at 3,773,871 to 3,775,316 _c36090 PGA1_c36100: PGA1_c36100 - glutamate synthase [NADPH] large chain, at 3,775,380 to 3,779,912 _c36100 Position (kb) 3773 3774 3775 3776Strain fitness (log2 ratio) -2 -1 0 1at 3773.850 kb on + strandat 3773.864 kb on - strandat 3773.870 kb on - strandat 3773.896 kb on - strandat 3773.990 kb on + strandat 3774.044 kb on + strand, within PGA1_c36090at 3774.049 kb on + strand, within PGA1_c36090at 3774.052 kb on - strand, within PGA1_c36090at 3774.052 kb on - strand, within PGA1_c36090at 3774.196 kb on - strand, within PGA1_c36090at 3774.264 kb on + strand, within PGA1_c36090at 3774.272 kb on - strand, within PGA1_c36090at 3774.277 kb on + strand, within PGA1_c36090at 3774.278 kb on - strand, within PGA1_c36090at 3774.280 kb on + strand, within PGA1_c36090at 3774.339 kb on + strand, within PGA1_c36090at 3774.339 kb on + strand, within PGA1_c36090at 3774.341 kb on + strand, within PGA1_c36090at 3774.347 kb on - strand, within PGA1_c36090at 3774.347 kb on - strand, within PGA1_c36090at 3774.347 kb on - strand, within PGA1_c36090at 3774.347 kb on - strand, within PGA1_c36090at 3774.381 kb on + strand, within PGA1_c36090at 3774.389 kb on - strand, within PGA1_c36090at 3774.389 kb on - strand, within PGA1_c36090at 3774.389 kb on - strand, within PGA1_c36090at 3774.389 kb on - strand, within PGA1_c36090at 3774.394 kb on + strand, within PGA1_c36090at 3774.397 kb on - strand, within PGA1_c36090at 3774.416 kb on + strand, within PGA1_c36090at 3774.421 kb on + strand, within PGA1_c36090at 3774.424 kb on - strand, within PGA1_c36090at 3774.426 kb on + strand, within PGA1_c36090at 3774.431 kb on + strand, within PGA1_c36090at 3774.455 kb on - strand, within PGA1_c36090at 3774.534 kb on + strand, within PGA1_c36090at 3774.534 kb on + strand, within PGA1_c36090at 3774.534 kb on + strand, within PGA1_c36090at 3774.534 kb on + strand, within PGA1_c36090at 3774.539 kb on + strand, within PGA1_c36090at 3774.605 kb on - strand, within PGA1_c36090at 3774.736 kb on - strand, within PGA1_c36090at 3774.777 kb on + strand, within PGA1_c36090at 3774.777 kb on + strand, within PGA1_c36090at 3774.777 kb on + strand, within PGA1_c36090at 3774.785 kb on - strand, within PGA1_c36090at 3774.785 kb on - strand, within PGA1_c36090at 3774.787 kb on + strand, within PGA1_c36090at 3774.877 kb on - strand, within PGA1_c36090at 3774.953 kb on + strand, within PGA1_c36090at 3774.953 kb on + strand, within PGA1_c36090at 3774.953 kb on + strand, within PGA1_c36090at 3774.961 kb on - strand, within PGA1_c36090at 3775.000 kb on - strand, within PGA1_c36090at 3775.015 kb on + strand, within PGA1_c36090at 3775.072 kb on - strand, within PGA1_c36090at 3775.126 kb on - strand, within PGA1_c36090at 3775.192 kb on + strandat 3775.195 kb on + strandat 3775.244 kb on + strandat 3775.252 kb on - strandat 3775.269 kb on + strandat 3775.311 kb on + strandat 3775.335 kb on - strandat 3775.355 kb on - strandat 3775.379 kb on - strandat 3775.418 kb on + strandat 3775.477 kb on - strandat 3775.483 kb on + strandat 3775.483 kb on + strandat 3775.483 kb on + strandat 3775.491 kb on - strandat 3775.491 kb on - strandat 3775.529 kb on + strandat 3775.537 kb on - strandat 3775.737 kb on + strandat 3775.745 kb on - strandat 3775.818 kb on + strandat 3775.826 kb on - strandat 3775.836 kb on - strand, within PGA1_c36100at 3775.893 kb on + strand, within PGA1_c36100at 3775.894 kb on - strand, within PGA1_c36100at 3775.980 kb on + strand, within PGA1_c36100at 3776.031 kb on - strand, within PGA1_c36100at 3776.051 kb on + strand, within PGA1_c36100at 3776.059 kb on - strand, within PGA1_c36100at 3776.078 kb on + strand, within PGA1_c36100at 3776.148 kb on - strand, within PGA1_c36100at 3776.180 kb on + strand, within PGA1_c36100at 3776.237 kb on - strand, within PGA1_c36100at 3776.267 kb on + strand, within PGA1_c36100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,773,850 + +0.2
3,773,864 - -1.7
3,773,870 - +0.3
3,773,896 - -0.9
3,773,990 + -1.5
3,774,044 + PGA1_c36090 0.12 +0.1
3,774,049 + PGA1_c36090 0.12 -2.2
3,774,052 - PGA1_c36090 0.13 -0.9
3,774,052 - PGA1_c36090 0.13 -0.5
3,774,196 - PGA1_c36090 0.22 -0.5
3,774,264 + PGA1_c36090 0.27 -1.5
3,774,272 - PGA1_c36090 0.28 -0.0
3,774,277 + PGA1_c36090 0.28 -1.2
3,774,278 - PGA1_c36090 0.28 -1.7
3,774,280 + PGA1_c36090 0.28 +0.7
3,774,339 + PGA1_c36090 0.32 -1.5
3,774,339 + PGA1_c36090 0.32 -0.5
3,774,341 + PGA1_c36090 0.33 +0.1
3,774,347 - PGA1_c36090 0.33 -0.1
3,774,347 - PGA1_c36090 0.33 -0.5
3,774,347 - PGA1_c36090 0.33 -0.4
3,774,347 - PGA1_c36090 0.33 -1.1
3,774,381 + PGA1_c36090 0.35 -2.1
3,774,389 - PGA1_c36090 0.36 -2.1
3,774,389 - PGA1_c36090 0.36 +0.5
3,774,389 - PGA1_c36090 0.36 -1.2
3,774,389 - PGA1_c36090 0.36 -0.1
3,774,394 + PGA1_c36090 0.36 +0.1
3,774,397 - PGA1_c36090 0.36 -0.2
3,774,416 + PGA1_c36090 0.38 -1.7
3,774,421 + PGA1_c36090 0.38 -0.2
3,774,424 - PGA1_c36090 0.38 -0.7
3,774,426 + PGA1_c36090 0.38 -0.8
3,774,431 + PGA1_c36090 0.39 +0.5
3,774,455 - PGA1_c36090 0.40 +0.1
3,774,534 + PGA1_c36090 0.46 -0.5
3,774,534 + PGA1_c36090 0.46 -0.6
3,774,534 + PGA1_c36090 0.46 -0.7
3,774,534 + PGA1_c36090 0.46 -1.6
3,774,539 + PGA1_c36090 0.46 -0.3
3,774,605 - PGA1_c36090 0.51 -0.7
3,774,736 - PGA1_c36090 0.60 -1.5
3,774,777 + PGA1_c36090 0.63 -0.8
3,774,777 + PGA1_c36090 0.63 -0.9
3,774,777 + PGA1_c36090 0.63 -0.9
3,774,785 - PGA1_c36090 0.63 -1.7
3,774,785 - PGA1_c36090 0.63 -0.0
3,774,787 + PGA1_c36090 0.63 -0.9
3,774,877 - PGA1_c36090 0.70 -0.6
3,774,953 + PGA1_c36090 0.75 -2.2
3,774,953 + PGA1_c36090 0.75 -0.1
3,774,953 + PGA1_c36090 0.75 -0.1
3,774,961 - PGA1_c36090 0.75 -1.4
3,775,000 - PGA1_c36090 0.78 -0.6
3,775,015 + PGA1_c36090 0.79 -1.1
3,775,072 - PGA1_c36090 0.83 -0.1
3,775,126 - PGA1_c36090 0.87 +0.4
3,775,192 + -1.3
3,775,195 + -0.4
3,775,244 + -1.0
3,775,252 - -1.5
3,775,269 + -0.9
3,775,311 + +0.9
3,775,335 - -0.7
3,775,355 - +0.1
3,775,379 - +0.6
3,775,418 + -1.4
3,775,477 - -0.7
3,775,483 + -0.3
3,775,483 + -1.1
3,775,483 + +1.0
3,775,491 - -1.6
3,775,491 - -1.9
3,775,529 + -1.9
3,775,537 - -1.8
3,775,737 + -0.2
3,775,745 - -1.2
3,775,818 + +0.0
3,775,826 - -1.0
3,775,836 - PGA1_c36100 0.10 -1.4
3,775,893 + PGA1_c36100 0.11 -1.1
3,775,894 - PGA1_c36100 0.11 -0.2
3,775,980 + PGA1_c36100 0.13 +0.5
3,776,031 - PGA1_c36100 0.14 -2.3
3,776,051 + PGA1_c36100 0.15 +0.6
3,776,059 - PGA1_c36100 0.15 -2.5
3,776,078 + PGA1_c36100 0.15 -0.5
3,776,148 - PGA1_c36100 0.17 +0.8
3,776,180 + PGA1_c36100 0.18 +0.2
3,776,237 - PGA1_c36100 0.19 -0.4
3,776,267 + PGA1_c36100 0.20 -0.3

Or see this region's nucleotide sequence