Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35080

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35060 and PGA1_c35070 overlap by 11 nucleotidesPGA1_c35070 and PGA1_c35080 are separated by 20 nucleotidesPGA1_c35080 and PGA1_c35090 are separated by 1 nucleotidesPGA1_c35090 and PGA1_c35100 are separated by 0 nucleotides PGA1_c35060: PGA1_c35060 - inner membrane protein, at 3,679,222 to 3,679,575 _c35060 PGA1_c35070: PGA1_c35070 - chromosome-partitioning protein ParB, at 3,679,565 to 3,680,458 _c35070 PGA1_c35080: PGA1_c35080 - chromosome partitioning protein ParA, at 3,680,479 to 3,681,279 _c35080 PGA1_c35090: PGA1_c35090 - ribosomal RNA small subunit methyltransferase G, at 3,681,281 to 3,681,895 _c35090 PGA1_c35100: PGA1_c35100 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 3,681,896 to 3,683,770 _c35100 Position (kb) 3680 3681 3682Strain fitness (log2 ratio) -2 -1 0 1 2at 3679.508 kb on - strand, within PGA1_c35060at 3679.514 kb on - strand, within PGA1_c35060at 3679.565 kb on - strandat 3680.474 kb on - strandat 3680.483 kb on - strandat 3680.499 kb on - strandat 3680.549 kb on - strandat 3680.549 kb on - strandat 3680.549 kb on - strandat 3680.563 kb on + strand, within PGA1_c35080at 3680.662 kb on - strand, within PGA1_c35080at 3680.752 kb on - strand, within PGA1_c35080at 3680.943 kb on + strand, within PGA1_c35080at 3680.943 kb on + strand, within PGA1_c35080at 3681.087 kb on - strand, within PGA1_c35080at 3681.102 kb on - strand, within PGA1_c35080at 3681.287 kb on - strandat 3681.326 kb on - strandat 3681.418 kb on + strand, within PGA1_c35090at 3681.432 kb on + strand, within PGA1_c35090at 3681.432 kb on + strand, within PGA1_c35090at 3681.440 kb on - strand, within PGA1_c35090at 3681.448 kb on + strand, within PGA1_c35090at 3681.451 kb on - strand, within PGA1_c35090at 3681.461 kb on - strand, within PGA1_c35090at 3681.483 kb on - strand, within PGA1_c35090at 3681.497 kb on - strand, within PGA1_c35090at 3681.512 kb on + strand, within PGA1_c35090at 3681.520 kb on - strand, within PGA1_c35090at 3681.583 kb on + strand, within PGA1_c35090at 3681.584 kb on - strand, within PGA1_c35090at 3681.591 kb on + strand, within PGA1_c35090at 3681.591 kb on - strand, within PGA1_c35090at 3681.593 kb on + strand, within PGA1_c35090at 3681.633 kb on + strand, within PGA1_c35090at 3681.633 kb on + strand, within PGA1_c35090at 3681.689 kb on + strand, within PGA1_c35090at 3681.689 kb on + strand, within PGA1_c35090at 3681.739 kb on - strand, within PGA1_c35090at 3681.739 kb on - strand, within PGA1_c35090at 3681.743 kb on + strand, within PGA1_c35090at 3681.748 kb on + strand, within PGA1_c35090at 3681.756 kb on - strand, within PGA1_c35090at 3681.766 kb on - strand, within PGA1_c35090at 3681.825 kb on + strand, within PGA1_c35090at 3681.825 kb on + strand, within PGA1_c35090at 3681.825 kb on + strand, within PGA1_c35090at 3681.825 kb on + strand, within PGA1_c35090at 3681.825 kb on + strand, within PGA1_c35090at 3681.835 kb on + strandat 3681.842 kb on - strandat 3681.843 kb on - strandat 3681.878 kb on + strandat 3681.881 kb on - strandat 3681.887 kb on - strandat 3681.893 kb on + strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.901 kb on - strandat 3681.907 kb on + strandat 3681.909 kb on + strandat 3681.915 kb on - strandat 3681.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,679,508 - PGA1_c35060 0.81 -0.6
3,679,514 - PGA1_c35060 0.82 -1.5
3,679,565 - -0.3
3,680,474 - -1.2
3,680,483 - -1.6
3,680,499 - -0.1
3,680,549 - -0.2
3,680,549 - -1.0
3,680,549 - -0.9
3,680,563 + PGA1_c35080 0.10 -0.4
3,680,662 - PGA1_c35080 0.23 -1.4
3,680,752 - PGA1_c35080 0.34 -1.8
3,680,943 + PGA1_c35080 0.58 -1.2
3,680,943 + PGA1_c35080 0.58 -1.0
3,681,087 - PGA1_c35080 0.76 -0.7
3,681,102 - PGA1_c35080 0.78 +1.3
3,681,287 - -0.7
3,681,326 - -0.3
3,681,418 + PGA1_c35090 0.22 -0.2
3,681,432 + PGA1_c35090 0.25 +0.7
3,681,432 + PGA1_c35090 0.25 +0.5
3,681,440 - PGA1_c35090 0.26 +0.6
3,681,448 + PGA1_c35090 0.27 +0.4
3,681,451 - PGA1_c35090 0.28 +0.4
3,681,461 - PGA1_c35090 0.29 -0.7
3,681,483 - PGA1_c35090 0.33 -0.4
3,681,497 - PGA1_c35090 0.35 -0.6
3,681,512 + PGA1_c35090 0.38 +0.1
3,681,520 - PGA1_c35090 0.39 +0.5
3,681,583 + PGA1_c35090 0.49 +0.1
3,681,584 - PGA1_c35090 0.49 +0.9
3,681,591 + PGA1_c35090 0.50 -1.0
3,681,591 - PGA1_c35090 0.50 -0.7
3,681,593 + PGA1_c35090 0.51 -1.1
3,681,633 + PGA1_c35090 0.57 +0.4
3,681,633 + PGA1_c35090 0.57 +0.3
3,681,689 + PGA1_c35090 0.66 -0.7
3,681,689 + PGA1_c35090 0.66 -1.4
3,681,739 - PGA1_c35090 0.74 +0.5
3,681,739 - PGA1_c35090 0.74 -0.2
3,681,743 + PGA1_c35090 0.75 -1.9
3,681,748 + PGA1_c35090 0.76 -1.4
3,681,756 - PGA1_c35090 0.77 +0.2
3,681,766 - PGA1_c35090 0.79 +0.9
3,681,825 + PGA1_c35090 0.88 +1.1
3,681,825 + PGA1_c35090 0.88 +0.0
3,681,825 + PGA1_c35090 0.88 +1.1
3,681,825 + PGA1_c35090 0.88 -0.1
3,681,825 + PGA1_c35090 0.88 -0.6
3,681,835 + -0.1
3,681,842 - +1.8
3,681,843 - +0.7
3,681,878 + -0.5
3,681,881 - -0.9
3,681,887 - -0.1
3,681,893 + +1.0
3,681,901 - +0.3
3,681,901 - -0.1
3,681,901 - +0.4
3,681,901 - +0.9
3,681,901 - +0.9
3,681,901 - -0.7
3,681,901 - +0.3
3,681,907 + -0.8
3,681,909 + +0.9
3,681,915 - +1.4
3,681,915 - +0.5

Or see this region's nucleotide sequence