Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35060 and PGA1_c35070 overlap by 11 nucleotides PGA1_c35070 and PGA1_c35080 are separated by 20 nucleotides PGA1_c35080 and PGA1_c35090 are separated by 1 nucleotides PGA1_c35090 and PGA1_c35100 are separated by 0 nucleotides
PGA1_c35060: PGA1_c35060 - inner membrane protein, at 3,679,222 to 3,679,575
_c35060
PGA1_c35070: PGA1_c35070 - chromosome-partitioning protein ParB, at 3,679,565 to 3,680,458
_c35070
PGA1_c35080: PGA1_c35080 - chromosome partitioning protein ParA, at 3,680,479 to 3,681,279
_c35080
PGA1_c35090: PGA1_c35090 - ribosomal RNA small subunit methyltransferase G, at 3,681,281 to 3,681,895
_c35090
PGA1_c35100: PGA1_c35100 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 3,681,896 to 3,683,770
_c35100
Position (kb)
3680
3681
3682 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3679.508 kb on - strand, within PGA1_c35060 at 3679.514 kb on - strand, within PGA1_c35060 at 3679.565 kb on - strand at 3680.474 kb on - strand at 3680.483 kb on - strand at 3680.499 kb on - strand at 3680.549 kb on - strand at 3680.549 kb on - strand at 3680.549 kb on - strand at 3680.563 kb on + strand, within PGA1_c35080 at 3680.662 kb on - strand, within PGA1_c35080 at 3680.752 kb on - strand, within PGA1_c35080 at 3680.943 kb on + strand, within PGA1_c35080 at 3680.943 kb on + strand, within PGA1_c35080 at 3681.087 kb on - strand, within PGA1_c35080 at 3681.102 kb on - strand, within PGA1_c35080 at 3681.287 kb on - strand at 3681.326 kb on - strand at 3681.418 kb on + strand, within PGA1_c35090 at 3681.432 kb on + strand, within PGA1_c35090 at 3681.432 kb on + strand, within PGA1_c35090 at 3681.440 kb on - strand, within PGA1_c35090 at 3681.448 kb on + strand, within PGA1_c35090 at 3681.451 kb on - strand, within PGA1_c35090 at 3681.461 kb on - strand, within PGA1_c35090 at 3681.483 kb on - strand, within PGA1_c35090 at 3681.497 kb on - strand, within PGA1_c35090 at 3681.512 kb on + strand, within PGA1_c35090 at 3681.520 kb on - strand, within PGA1_c35090 at 3681.583 kb on + strand, within PGA1_c35090 at 3681.584 kb on - strand, within PGA1_c35090 at 3681.591 kb on + strand, within PGA1_c35090 at 3681.591 kb on - strand, within PGA1_c35090 at 3681.593 kb on + strand, within PGA1_c35090 at 3681.633 kb on + strand, within PGA1_c35090 at 3681.633 kb on + strand, within PGA1_c35090 at 3681.689 kb on + strand, within PGA1_c35090 at 3681.689 kb on + strand, within PGA1_c35090 at 3681.739 kb on - strand, within PGA1_c35090 at 3681.739 kb on - strand, within PGA1_c35090 at 3681.743 kb on + strand, within PGA1_c35090 at 3681.748 kb on + strand, within PGA1_c35090 at 3681.756 kb on - strand, within PGA1_c35090 at 3681.766 kb on - strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.835 kb on + strand at 3681.842 kb on - strand at 3681.843 kb on - strand at 3681.878 kb on + strand at 3681.881 kb on - strand at 3681.887 kb on - strand at 3681.893 kb on + strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.907 kb on + strand at 3681.909 kb on + strand at 3681.915 kb on - strand at 3681.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,679,508 - PGA1_c35060 0.81 -0.6 3,679,514 - PGA1_c35060 0.82 -1.5 3,679,565 - -0.3 3,680,474 - -1.2 3,680,483 - -1.6 3,680,499 - -0.1 3,680,549 - -0.2 3,680,549 - -1.0 3,680,549 - -0.9 3,680,563 + PGA1_c35080 0.10 -0.4 3,680,662 - PGA1_c35080 0.23 -1.4 3,680,752 - PGA1_c35080 0.34 -1.8 3,680,943 + PGA1_c35080 0.58 -1.2 3,680,943 + PGA1_c35080 0.58 -1.0 3,681,087 - PGA1_c35080 0.76 -0.7 3,681,102 - PGA1_c35080 0.78 +1.3 3,681,287 - -0.7 3,681,326 - -0.3 3,681,418 + PGA1_c35090 0.22 -0.2 3,681,432 + PGA1_c35090 0.25 +0.7 3,681,432 + PGA1_c35090 0.25 +0.5 3,681,440 - PGA1_c35090 0.26 +0.6 3,681,448 + PGA1_c35090 0.27 +0.4 3,681,451 - PGA1_c35090 0.28 +0.4 3,681,461 - PGA1_c35090 0.29 -0.7 3,681,483 - PGA1_c35090 0.33 -0.4 3,681,497 - PGA1_c35090 0.35 -0.6 3,681,512 + PGA1_c35090 0.38 +0.1 3,681,520 - PGA1_c35090 0.39 +0.5 3,681,583 + PGA1_c35090 0.49 +0.1 3,681,584 - PGA1_c35090 0.49 +0.9 3,681,591 + PGA1_c35090 0.50 -1.0 3,681,591 - PGA1_c35090 0.50 -0.7 3,681,593 + PGA1_c35090 0.51 -1.1 3,681,633 + PGA1_c35090 0.57 +0.4 3,681,633 + PGA1_c35090 0.57 +0.3 3,681,689 + PGA1_c35090 0.66 -0.7 3,681,689 + PGA1_c35090 0.66 -1.4 3,681,739 - PGA1_c35090 0.74 +0.5 3,681,739 - PGA1_c35090 0.74 -0.2 3,681,743 + PGA1_c35090 0.75 -1.9 3,681,748 + PGA1_c35090 0.76 -1.4 3,681,756 - PGA1_c35090 0.77 +0.2 3,681,766 - PGA1_c35090 0.79 +0.9 3,681,825 + PGA1_c35090 0.88 +1.1 3,681,825 + PGA1_c35090 0.88 +0.0 3,681,825 + PGA1_c35090 0.88 +1.1 3,681,825 + PGA1_c35090 0.88 -0.1 3,681,825 + PGA1_c35090 0.88 -0.6 3,681,835 + -0.1 3,681,842 - +1.8 3,681,843 - +0.7 3,681,878 + -0.5 3,681,881 - -0.9 3,681,887 - -0.1 3,681,893 + +1.0 3,681,901 - +0.3 3,681,901 - -0.1 3,681,901 - +0.4 3,681,901 - +0.9 3,681,901 - +0.9 3,681,901 - -0.7 3,681,901 - +0.3 3,681,907 + -0.8 3,681,909 + +0.9 3,681,915 - +1.4 3,681,915 - +0.5
Or see this region's nucleotide sequence