Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33310

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c33290 and PGA1_c33300 are separated by 64 nucleotidesPGA1_c33300 and PGA1_c33310 are separated by 67 nucleotidesPGA1_c33310 and PGA1_c33320 are separated by 125 nucleotides PGA1_c33290: PGA1_c33290 - putative DNA translocase FtsK, at 3,488,193 to 3,491,354 _c33290 PGA1_c33300: PGA1_c33300 - putative outer membrane lipoprotein LolA, at 3,491,419 to 3,492,006 _c33300 PGA1_c33310: PGA1_c33310 - Uncharacterized protein conserved in bacteria, at 3,492,074 to 3,492,661 _c33310 PGA1_c33320: PGA1_c33320 - putative exodeoxyribonuclease III, at 3,492,787 to 3,493,575 _c33320 Position (kb) 3492 3493Strain fitness (log2 ratio) -2 -1 0 1at 3491.995 kb on + strandat 3491.995 kb on + strandat 3491.995 kb on + strandat 3492.003 kb on - strandat 3492.003 kb on - strandat 3492.075 kb on - strandat 3492.101 kb on - strandat 3492.133 kb on - strand, within PGA1_c33310at 3492.346 kb on + strand, within PGA1_c33310at 3492.511 kb on - strand, within PGA1_c33310at 3492.512 kb on - strand, within PGA1_c33310at 3492.672 kb on - strandat 3492.851 kb on + strandat 3492.855 kb on + strandat 3492.883 kb on - strand, within PGA1_c33320at 3492.896 kb on + strand, within PGA1_c33320at 3492.896 kb on + strand, within PGA1_c33320at 3492.896 kb on + strand, within PGA1_c33320at 3492.904 kb on - strand, within PGA1_c33320at 3492.904 kb on - strand, within PGA1_c33320at 3492.904 kb on - strand, within PGA1_c33320at 3492.904 kb on - strand, within PGA1_c33320at 3492.909 kb on - strand, within PGA1_c33320at 3492.965 kb on + strand, within PGA1_c33320at 3492.965 kb on + strand, within PGA1_c33320at 3492.965 kb on + strand, within PGA1_c33320at 3492.965 kb on + strand, within PGA1_c33320at 3492.967 kb on + strand, within PGA1_c33320at 3492.973 kb on - strand, within PGA1_c33320at 3492.973 kb on - strand, within PGA1_c33320at 3492.973 kb on - strand, within PGA1_c33320at 3492.973 kb on - strand, within PGA1_c33320at 3492.973 kb on - strand, within PGA1_c33320at 3493.040 kb on + strand, within PGA1_c33320at 3493.050 kb on + strand, within PGA1_c33320at 3493.070 kb on + strand, within PGA1_c33320at 3493.113 kb on + strand, within PGA1_c33320at 3493.118 kb on + strand, within PGA1_c33320at 3493.121 kb on - strand, within PGA1_c33320at 3493.126 kb on - strand, within PGA1_c33320at 3493.155 kb on + strand, within PGA1_c33320at 3493.168 kb on - strand, within PGA1_c33320at 3493.228 kb on + strand, within PGA1_c33320at 3493.228 kb on + strand, within PGA1_c33320at 3493.236 kb on - strand, within PGA1_c33320at 3493.310 kb on + strand, within PGA1_c33320at 3493.310 kb on + strand, within PGA1_c33320at 3493.310 kb on + strand, within PGA1_c33320at 3493.312 kb on + strand, within PGA1_c33320at 3493.386 kb on + strand, within PGA1_c33320at 3493.386 kb on - strand, within PGA1_c33320at 3493.394 kb on - strand, within PGA1_c33320at 3493.398 kb on + strand, within PGA1_c33320at 3493.480 kb on + strand, within PGA1_c33320at 3493.488 kb on - strand, within PGA1_c33320at 3493.565 kb on - strandat 3493.595 kb on + strandat 3493.595 kb on + strandat 3493.603 kb on - strandat 3493.603 kb on - strandat 3493.603 kb on - strandat 3493.603 kb on - strandat 3493.603 kb on - strandat 3493.656 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,491,995 + -0.5
3,491,995 + -0.8
3,491,995 + -1.5
3,492,003 - -0.3
3,492,003 - -0.1
3,492,075 - -0.0
3,492,101 - +0.5
3,492,133 - PGA1_c33310 0.10 -0.9
3,492,346 + PGA1_c33310 0.46 -0.7
3,492,511 - PGA1_c33310 0.74 -2.6
3,492,512 - PGA1_c33310 0.74 -1.9
3,492,672 - -2.4
3,492,851 + -0.8
3,492,855 + -0.7
3,492,883 - PGA1_c33320 0.12 -0.6
3,492,896 + PGA1_c33320 0.14 -0.6
3,492,896 + PGA1_c33320 0.14 -0.6
3,492,896 + PGA1_c33320 0.14 +0.6
3,492,904 - PGA1_c33320 0.15 +0.5
3,492,904 - PGA1_c33320 0.15 +0.4
3,492,904 - PGA1_c33320 0.15 +0.6
3,492,904 - PGA1_c33320 0.15 -0.3
3,492,909 - PGA1_c33320 0.15 -0.9
3,492,965 + PGA1_c33320 0.23 -1.1
3,492,965 + PGA1_c33320 0.23 -0.2
3,492,965 + PGA1_c33320 0.23 -0.0
3,492,965 + PGA1_c33320 0.23 -1.0
3,492,967 + PGA1_c33320 0.23 -0.3
3,492,973 - PGA1_c33320 0.24 +0.5
3,492,973 - PGA1_c33320 0.24 -0.4
3,492,973 - PGA1_c33320 0.24 -1.5
3,492,973 - PGA1_c33320 0.24 +0.4
3,492,973 - PGA1_c33320 0.24 -0.3
3,493,040 + PGA1_c33320 0.32 +0.5
3,493,050 + PGA1_c33320 0.33 +0.1
3,493,070 + PGA1_c33320 0.36 +1.7
3,493,113 + PGA1_c33320 0.41 +0.6
3,493,118 + PGA1_c33320 0.42 -0.3
3,493,121 - PGA1_c33320 0.42 +0.2
3,493,126 - PGA1_c33320 0.43 -0.1
3,493,155 + PGA1_c33320 0.47 +1.2
3,493,168 - PGA1_c33320 0.48 -0.2
3,493,228 + PGA1_c33320 0.56 -1.3
3,493,228 + PGA1_c33320 0.56 +1.5
3,493,236 - PGA1_c33320 0.57 +0.5
3,493,310 + PGA1_c33320 0.66 -1.1
3,493,310 + PGA1_c33320 0.66 -0.5
3,493,310 + PGA1_c33320 0.66 -0.0
3,493,312 + PGA1_c33320 0.67 -0.5
3,493,386 + PGA1_c33320 0.76 -0.2
3,493,386 - PGA1_c33320 0.76 +1.5
3,493,394 - PGA1_c33320 0.77 +0.4
3,493,398 + PGA1_c33320 0.77 +0.5
3,493,480 + PGA1_c33320 0.88 +0.5
3,493,488 - PGA1_c33320 0.89 -0.9
3,493,565 - +0.9
3,493,595 + +0.6
3,493,595 + +1.3
3,493,603 - +0.2
3,493,603 - +0.9
3,493,603 - +0.4
3,493,603 - +0.5
3,493,603 - -0.3
3,493,656 + +0.3

Or see this region's nucleotide sequence