Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33290 and PGA1_c33300 are separated by 64 nucleotides PGA1_c33300 and PGA1_c33310 are separated by 67 nucleotides PGA1_c33310 and PGA1_c33320 are separated by 125 nucleotides
PGA1_c33290: PGA1_c33290 - putative DNA translocase FtsK, at 3,488,193 to 3,491,354
_c33290
PGA1_c33300: PGA1_c33300 - putative outer membrane lipoprotein LolA, at 3,491,419 to 3,492,006
_c33300
PGA1_c33310: PGA1_c33310 - Uncharacterized protein conserved in bacteria, at 3,492,074 to 3,492,661
_c33310
PGA1_c33320: PGA1_c33320 - putative exodeoxyribonuclease III, at 3,492,787 to 3,493,575
_c33320
Position (kb)
3492
3493 Strain fitness (log2 ratio)
-2
-1
0
1 at 3491.995 kb on + strand at 3491.995 kb on + strand at 3491.995 kb on + strand at 3492.003 kb on - strand at 3492.003 kb on - strand at 3492.075 kb on - strand at 3492.101 kb on - strand at 3492.133 kb on - strand, within PGA1_c33310 at 3492.346 kb on + strand, within PGA1_c33310 at 3492.511 kb on - strand, within PGA1_c33310 at 3492.512 kb on - strand, within PGA1_c33310 at 3492.672 kb on - strand at 3492.851 kb on + strand at 3492.855 kb on + strand at 3492.883 kb on - strand, within PGA1_c33320 at 3492.896 kb on + strand, within PGA1_c33320 at 3492.896 kb on + strand, within PGA1_c33320 at 3492.896 kb on + strand, within PGA1_c33320 at 3492.904 kb on - strand, within PGA1_c33320 at 3492.904 kb on - strand, within PGA1_c33320 at 3492.904 kb on - strand, within PGA1_c33320 at 3492.904 kb on - strand, within PGA1_c33320 at 3492.909 kb on - strand, within PGA1_c33320 at 3492.965 kb on + strand, within PGA1_c33320 at 3492.965 kb on + strand, within PGA1_c33320 at 3492.965 kb on + strand, within PGA1_c33320 at 3492.965 kb on + strand, within PGA1_c33320 at 3492.967 kb on + strand, within PGA1_c33320 at 3492.973 kb on - strand, within PGA1_c33320 at 3492.973 kb on - strand, within PGA1_c33320 at 3492.973 kb on - strand, within PGA1_c33320 at 3492.973 kb on - strand, within PGA1_c33320 at 3492.973 kb on - strand, within PGA1_c33320 at 3493.040 kb on + strand, within PGA1_c33320 at 3493.050 kb on + strand, within PGA1_c33320 at 3493.070 kb on + strand, within PGA1_c33320 at 3493.113 kb on + strand, within PGA1_c33320 at 3493.118 kb on + strand, within PGA1_c33320 at 3493.121 kb on - strand, within PGA1_c33320 at 3493.126 kb on - strand, within PGA1_c33320 at 3493.155 kb on + strand, within PGA1_c33320 at 3493.168 kb on - strand, within PGA1_c33320 at 3493.228 kb on + strand, within PGA1_c33320 at 3493.228 kb on + strand, within PGA1_c33320 at 3493.236 kb on - strand, within PGA1_c33320 at 3493.310 kb on + strand, within PGA1_c33320 at 3493.310 kb on + strand, within PGA1_c33320 at 3493.310 kb on + strand, within PGA1_c33320 at 3493.312 kb on + strand, within PGA1_c33320 at 3493.386 kb on + strand, within PGA1_c33320 at 3493.386 kb on - strand, within PGA1_c33320 at 3493.394 kb on - strand, within PGA1_c33320 at 3493.398 kb on + strand, within PGA1_c33320 at 3493.480 kb on + strand, within PGA1_c33320 at 3493.488 kb on - strand, within PGA1_c33320 at 3493.565 kb on - strand at 3493.595 kb on + strand at 3493.595 kb on + strand at 3493.603 kb on - strand at 3493.603 kb on - strand at 3493.603 kb on - strand at 3493.603 kb on - strand at 3493.603 kb on - strand at 3493.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,491,995 + -0.5 3,491,995 + -0.8 3,491,995 + -1.5 3,492,003 - -0.3 3,492,003 - -0.1 3,492,075 - -0.0 3,492,101 - +0.5 3,492,133 - PGA1_c33310 0.10 -0.9 3,492,346 + PGA1_c33310 0.46 -0.7 3,492,511 - PGA1_c33310 0.74 -2.6 3,492,512 - PGA1_c33310 0.74 -1.9 3,492,672 - -2.4 3,492,851 + -0.8 3,492,855 + -0.7 3,492,883 - PGA1_c33320 0.12 -0.6 3,492,896 + PGA1_c33320 0.14 -0.6 3,492,896 + PGA1_c33320 0.14 -0.6 3,492,896 + PGA1_c33320 0.14 +0.6 3,492,904 - PGA1_c33320 0.15 +0.5 3,492,904 - PGA1_c33320 0.15 +0.4 3,492,904 - PGA1_c33320 0.15 +0.6 3,492,904 - PGA1_c33320 0.15 -0.3 3,492,909 - PGA1_c33320 0.15 -0.9 3,492,965 + PGA1_c33320 0.23 -1.1 3,492,965 + PGA1_c33320 0.23 -0.2 3,492,965 + PGA1_c33320 0.23 -0.0 3,492,965 + PGA1_c33320 0.23 -1.0 3,492,967 + PGA1_c33320 0.23 -0.3 3,492,973 - PGA1_c33320 0.24 +0.5 3,492,973 - PGA1_c33320 0.24 -0.4 3,492,973 - PGA1_c33320 0.24 -1.5 3,492,973 - PGA1_c33320 0.24 +0.4 3,492,973 - PGA1_c33320 0.24 -0.3 3,493,040 + PGA1_c33320 0.32 +0.5 3,493,050 + PGA1_c33320 0.33 +0.1 3,493,070 + PGA1_c33320 0.36 +1.7 3,493,113 + PGA1_c33320 0.41 +0.6 3,493,118 + PGA1_c33320 0.42 -0.3 3,493,121 - PGA1_c33320 0.42 +0.2 3,493,126 - PGA1_c33320 0.43 -0.1 3,493,155 + PGA1_c33320 0.47 +1.2 3,493,168 - PGA1_c33320 0.48 -0.2 3,493,228 + PGA1_c33320 0.56 -1.3 3,493,228 + PGA1_c33320 0.56 +1.5 3,493,236 - PGA1_c33320 0.57 +0.5 3,493,310 + PGA1_c33320 0.66 -1.1 3,493,310 + PGA1_c33320 0.66 -0.5 3,493,310 + PGA1_c33320 0.66 -0.0 3,493,312 + PGA1_c33320 0.67 -0.5 3,493,386 + PGA1_c33320 0.76 -0.2 3,493,386 - PGA1_c33320 0.76 +1.5 3,493,394 - PGA1_c33320 0.77 +0.4 3,493,398 + PGA1_c33320 0.77 +0.5 3,493,480 + PGA1_c33320 0.88 +0.5 3,493,488 - PGA1_c33320 0.89 -0.9 3,493,565 - +0.9 3,493,595 + +0.6 3,493,595 + +1.3 3,493,603 - +0.2 3,493,603 - +0.9 3,493,603 - +0.4 3,493,603 - +0.5 3,493,603 - -0.3 3,493,656 + +0.3
Or see this region's nucleotide sequence