Strain Fitness in Marinobacter adhaerens HP15 around HP15_32

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_30 and HP15_31 are separated by 52 nucleotidesHP15_31 and HP15_32 are separated by 50 nucleotidesHP15_32 and HP15_33 are separated by 4 nucleotides HP15_30: HP15_30 - dioxygenase DitA ferredoxin component-like protein, at 35,825 to 35,959 _30 HP15_31: HP15_31 - short-chain dehydrogenase/reductase SDR, at 36,012 to 36,770 _31 HP15_32: HP15_32 - glyoxalase/bleomycin resistance protein/dioxygenase, at 36,821 to 37,774 _32 HP15_33: HP15_33 - fumarylacetoacetate (FAA) hydrolase, at 37,779 to 38,681 _33 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.825 kb on - strandat 35.859 kb on - strand, within HP15_30at 35.899 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.909 kb on + strand, within HP15_30at 35.914 kb on + strand, within HP15_30at 35.917 kb on - strand, within HP15_30at 35.922 kb on - strand, within HP15_30at 35.954 kb on + strandat 36.010 kb on - strandat 36.018 kb on - strandat 36.060 kb on + strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.068 kb on - strandat 36.210 kb on - strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.211 kb on + strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.219 kb on - strand, within HP15_31at 36.230 kb on - strand, within HP15_31at 36.262 kb on + strand, within HP15_31at 36.355 kb on + strand, within HP15_31at 36.427 kb on + strand, within HP15_31at 36.455 kb on + strand, within HP15_31at 36.462 kb on - strand, within HP15_31at 36.496 kb on - strand, within HP15_31at 36.536 kb on - strand, within HP15_31at 36.561 kb on + strand, within HP15_31at 36.580 kb on + strand, within HP15_31at 36.595 kb on + strand, within HP15_31at 36.658 kb on + strand, within HP15_31at 36.658 kb on + strand, within HP15_31at 36.721 kb on - strandat 36.864 kb on - strandat 36.876 kb on + strandat 36.885 kb on - strandat 36.885 kb on - strandat 36.900 kb on + strandat 36.900 kb on + strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.978 kb on + strand, within HP15_32at 37.166 kb on + strand, within HP15_32at 37.211 kb on + strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.246 kb on + strand, within HP15_32at 37.265 kb on + strand, within HP15_32at 37.298 kb on - strand, within HP15_32at 37.355 kb on - strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.377 kb on - strand, within HP15_32at 37.379 kb on + strand, within HP15_32at 37.412 kb on + strand, within HP15_32at 37.461 kb on + strand, within HP15_32at 37.469 kb on - strand, within HP15_32at 37.485 kb on + strand, within HP15_32at 37.617 kb on + strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.669 kb on + strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.714 kb on - strandat 37.827 kb on + strandat 37.835 kb on - strandat 37.843 kb on - strandat 37.878 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.895 kb on - strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.940 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 38.002 kb on + strand, within HP15_33at 38.021 kb on + strand, within HP15_33at 38.060 kb on + strand, within HP15_33at 38.074 kb on - strand, within HP15_33at 38.103 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.116 kb on - strand, within HP15_33at 38.121 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.228 kb on + strand, within HP15_33at 38.300 kb on + strand, within HP15_33at 38.364 kb on - strand, within HP15_33at 38.394 kb on - strand, within HP15_33at 38.397 kb on + strand, within HP15_33at 38.405 kb on + strand, within HP15_33at 38.410 kb on + strand, within HP15_33at 38.418 kb on + strand, within HP15_33at 38.424 kb on - strand, within HP15_33at 38.499 kb on + strand, within HP15_33at 38.721 kb on + strandat 38.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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35,825 - -0.2
35,859 - HP15_30 0.25 -0.6
35,899 + HP15_30 0.55 -0.3
35,909 + HP15_30 0.62 +2.3
35,909 + HP15_30 0.62 -0.3
35,914 + HP15_30 0.66 +0.0
35,917 - HP15_30 0.68 -0.0
35,922 - HP15_30 0.72 -0.9
35,954 + -0.2
36,010 - +0.8
36,018 - +0.1
36,060 + +0.2
36,068 - +0.1
36,068 - -0.0
36,068 - +0.2
36,068 - +0.1
36,210 - HP15_31 0.26 +1.1
36,211 + HP15_31 0.26 -0.0
36,211 + HP15_31 0.26 +1.2
36,219 - HP15_31 0.27 -0.1
36,219 - HP15_31 0.27 +0.1
36,230 - HP15_31 0.29 +0.3
36,262 + HP15_31 0.33 +0.9
36,355 + HP15_31 0.45 -0.1
36,427 + HP15_31 0.55 +0.8
36,455 + HP15_31 0.58 -0.2
36,462 - HP15_31 0.59 -0.1
36,496 - HP15_31 0.64 -0.7
36,536 - HP15_31 0.69 -1.1
36,561 + HP15_31 0.72 +0.2
36,580 + HP15_31 0.75 +0.1
36,595 + HP15_31 0.77 +0.7
36,658 + HP15_31 0.85 +0.2
36,658 + HP15_31 0.85 -0.5
36,721 - +0.1
36,864 - -0.4
36,876 + -0.2
36,885 - -0.1
36,885 - +0.1
36,900 + +0.2
36,900 + -0.1
36,908 - -0.4
36,908 - -0.4
36,908 - -0.1
36,908 - -0.7
36,978 + HP15_32 0.16 -0.1
37,166 + HP15_32 0.36 +0.2
37,211 + HP15_32 0.41 -0.7
37,219 - HP15_32 0.42 -0.1
37,219 - HP15_32 0.42 -0.2
37,219 - HP15_32 0.42 -0.3
37,246 + HP15_32 0.45 -1.0
37,265 + HP15_32 0.47 -2.0
37,298 - HP15_32 0.50 +0.0
37,355 - HP15_32 0.56 -1.6
37,369 + HP15_32 0.57 -1.0
37,369 + HP15_32 0.57 +0.6
37,377 - HP15_32 0.58 -0.1
37,379 + HP15_32 0.58 -0.2
37,412 + HP15_32 0.62 +0.0
37,461 + HP15_32 0.67 -0.1
37,469 - HP15_32 0.68 +1.3
37,485 + HP15_32 0.70 -0.9
37,617 + HP15_32 0.83 -0.0
37,658 - HP15_32 0.88 -1.2
37,658 - HP15_32 0.88 -0.2
37,669 + HP15_32 0.89 +0.1
37,677 - HP15_32 0.90 +0.7
37,677 - HP15_32 0.90 +0.1
37,677 - HP15_32 0.90 +0.3
37,677 - HP15_32 0.90 +0.6
37,677 - HP15_32 0.90 -0.6
37,714 - -0.1
37,827 + +0.4
37,835 - -0.2
37,843 - -0.5
37,878 + HP15_33 0.11 +0.3
37,887 + HP15_33 0.12 +0.5
37,887 + HP15_33 0.12 +0.4
37,887 + HP15_33 0.12 +0.1
37,895 - HP15_33 0.13 +0.5
37,937 + HP15_33 0.17 +0.2
37,937 + HP15_33 0.17 -0.3
37,937 + HP15_33 0.17 -0.5
37,940 - HP15_33 0.18 -0.6
37,945 - HP15_33 0.18 +0.5
37,945 - HP15_33 0.18 +0.7
38,002 + HP15_33 0.25 -0.1
38,021 + HP15_33 0.27 +0.1
38,060 + HP15_33 0.31 +0.2
38,074 - HP15_33 0.33 -1.3
38,103 + HP15_33 0.36 -0.1
38,108 + HP15_33 0.36 -0.4
38,108 + HP15_33 0.36 +0.8
38,116 - HP15_33 0.37 -0.7
38,121 - HP15_33 0.38 +0.3
38,168 - HP15_33 0.43 +0.3
38,168 - HP15_33 0.43 -0.4
38,168 - HP15_33 0.43 -1.0
38,228 + HP15_33 0.50 +0.3
38,300 + HP15_33 0.58 +0.2
38,364 - HP15_33 0.65 +0.2
38,394 - HP15_33 0.68 +0.1
38,397 + HP15_33 0.68 -0.2
38,405 + HP15_33 0.69 -0.6
38,410 + HP15_33 0.70 -0.6
38,418 + HP15_33 0.71 +0.1
38,424 - HP15_33 0.71 +0.1
38,499 + HP15_33 0.80 -0.7
38,721 + +0.2
38,726 + +1.1

Or see this region's nucleotide sequence