Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32220 and PGA1_c32230 overlap by 4 nucleotides PGA1_c32230 and PGA1_c32240 are separated by 63 nucleotides
PGA1_c32220: PGA1_c32220 - 5-carboxymethyl-2-hydroxymuconic semialdehyde dehydrogenase HpcC, at 3,378,491 to 3,380,002
_c32220
PGA1_c32230: PGA1_c32230 - putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase, at 3,379,999 to 3,380,388
_c32230
PGA1_c32240: PGA1_c32240 - Uncharacterized conserved protein, at 3,380,452 to 3,381,711
_c32240
Position (kb)
3379
3380
3381 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3379.028 kb on - strand, within PGA1_c32220 at 3379.111 kb on - strand, within PGA1_c32220 at 3379.111 kb on - strand, within PGA1_c32220 at 3379.111 kb on - strand, within PGA1_c32220 at 3379.215 kb on - strand, within PGA1_c32220 at 3379.255 kb on + strand, within PGA1_c32220 at 3379.279 kb on - strand, within PGA1_c32220 at 3379.292 kb on - strand, within PGA1_c32220 at 3379.298 kb on + strand, within PGA1_c32220 at 3379.306 kb on - strand, within PGA1_c32220 at 3379.358 kb on - strand, within PGA1_c32220 at 3379.370 kb on - strand, within PGA1_c32220 at 3379.431 kb on + strand, within PGA1_c32220 at 3379.431 kb on + strand, within PGA1_c32220 at 3379.527 kb on - strand, within PGA1_c32220 at 3379.537 kb on + strand, within PGA1_c32220 at 3379.537 kb on + strand, within PGA1_c32220 at 3379.582 kb on + strand, within PGA1_c32220 at 3379.585 kb on - strand, within PGA1_c32220 at 3379.585 kb on - strand, within PGA1_c32220 at 3379.587 kb on + strand, within PGA1_c32220 at 3379.592 kb on + strand, within PGA1_c32220 at 3379.592 kb on + strand, within PGA1_c32220 at 3379.600 kb on - strand, within PGA1_c32220 at 3379.717 kb on + strand, within PGA1_c32220 at 3379.717 kb on + strand, within PGA1_c32220 at 3379.717 kb on + strand, within PGA1_c32220 at 3379.729 kb on + strand, within PGA1_c32220 at 3379.798 kb on - strand, within PGA1_c32220 at 3379.798 kb on - strand, within PGA1_c32220 at 3379.810 kb on - strand, within PGA1_c32220 at 3379.816 kb on + strand, within PGA1_c32220 at 3379.823 kb on - strand, within PGA1_c32220 at 3379.853 kb on - strand at 3379.959 kb on + strand at 3379.962 kb on - strand at 3379.997 kb on + strand at 3380.004 kb on - strand at 3380.005 kb on - strand at 3380.016 kb on - strand at 3380.021 kb on - strand at 3380.049 kb on + strand, within PGA1_c32230 at 3380.078 kb on - strand, within PGA1_c32230 at 3380.100 kb on + strand, within PGA1_c32230 at 3380.106 kb on - strand, within PGA1_c32230 at 3380.153 kb on - strand, within PGA1_c32230 at 3380.326 kb on - strand, within PGA1_c32230 at 3380.328 kb on + strand, within PGA1_c32230 at 3380.348 kb on + strand, within PGA1_c32230 at 3380.349 kb on + strand, within PGA1_c32230 at 3380.357 kb on - strand at 3380.689 kb on - strand, within PGA1_c32240 at 3380.699 kb on - strand, within PGA1_c32240 at 3380.699 kb on - strand, within PGA1_c32240 at 3380.699 kb on - strand, within PGA1_c32240 at 3380.725 kb on - strand, within PGA1_c32240 at 3380.751 kb on + strand, within PGA1_c32240 at 3380.760 kb on + strand, within PGA1_c32240 at 3380.760 kb on + strand, within PGA1_c32240 at 3380.862 kb on + strand, within PGA1_c32240 at 3380.894 kb on + strand, within PGA1_c32240 at 3380.902 kb on - strand, within PGA1_c32240 at 3381.037 kb on + strand, within PGA1_c32240 at 3381.040 kb on - strand, within PGA1_c32240 at 3381.066 kb on + strand, within PGA1_c32240 at 3381.066 kb on + strand, within PGA1_c32240 at 3381.066 kb on + strand, within PGA1_c32240 at 3381.081 kb on + strand, within PGA1_c32240 at 3381.089 kb on - strand, within PGA1_c32240 at 3381.134 kb on - strand, within PGA1_c32240 at 3381.153 kb on - strand, within PGA1_c32240 at 3381.188 kb on + strand, within PGA1_c32240 at 3381.209 kb on + strand, within PGA1_c32240 at 3381.304 kb on + strand, within PGA1_c32240 at 3381.312 kb on - strand, within PGA1_c32240 at 3381.312 kb on - strand, within PGA1_c32240 at 3381.312 kb on - strand, within PGA1_c32240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,379,028 - PGA1_c32220 0.36 +0.0 3,379,111 - PGA1_c32220 0.41 -0.8 3,379,111 - PGA1_c32220 0.41 +0.6 3,379,111 - PGA1_c32220 0.41 -1.8 3,379,215 - PGA1_c32220 0.48 -0.8 3,379,255 + PGA1_c32220 0.51 -0.5 3,379,279 - PGA1_c32220 0.52 +0.1 3,379,292 - PGA1_c32220 0.53 +0.4 3,379,298 + PGA1_c32220 0.53 +0.9 3,379,306 - PGA1_c32220 0.54 +2.0 3,379,358 - PGA1_c32220 0.57 +0.4 3,379,370 - PGA1_c32220 0.58 -0.2 3,379,431 + PGA1_c32220 0.62 -0.8 3,379,431 + PGA1_c32220 0.62 -1.2 3,379,527 - PGA1_c32220 0.69 -0.3 3,379,537 + PGA1_c32220 0.69 -0.9 3,379,537 + PGA1_c32220 0.69 -1.6 3,379,582 + PGA1_c32220 0.72 -0.2 3,379,585 - PGA1_c32220 0.72 -2.4 3,379,585 - PGA1_c32220 0.72 +1.2 3,379,587 + PGA1_c32220 0.72 -1.0 3,379,592 + PGA1_c32220 0.73 -1.1 3,379,592 + PGA1_c32220 0.73 -0.9 3,379,600 - PGA1_c32220 0.73 +0.4 3,379,717 + PGA1_c32220 0.81 +0.2 3,379,717 + PGA1_c32220 0.81 -0.8 3,379,717 + PGA1_c32220 0.81 +1.1 3,379,729 + PGA1_c32220 0.82 +1.4 3,379,798 - PGA1_c32220 0.86 +0.7 3,379,798 - PGA1_c32220 0.86 +0.0 3,379,810 - PGA1_c32220 0.87 -2.5 3,379,816 + PGA1_c32220 0.88 -0.2 3,379,823 - PGA1_c32220 0.88 -0.6 3,379,853 - -0.7 3,379,959 + +0.4 3,379,962 - +0.5 3,379,997 + +2.0 3,380,004 - -0.6 3,380,005 - +0.8 3,380,016 - -0.2 3,380,021 - +0.2 3,380,049 + PGA1_c32230 0.13 -1.1 3,380,078 - PGA1_c32230 0.20 +1.2 3,380,100 + PGA1_c32230 0.26 -2.1 3,380,106 - PGA1_c32230 0.27 -0.9 3,380,153 - PGA1_c32230 0.39 +0.1 3,380,326 - PGA1_c32230 0.84 -0.5 3,380,328 + PGA1_c32230 0.84 +1.2 3,380,348 + PGA1_c32230 0.89 -1.5 3,380,349 + PGA1_c32230 0.90 -0.9 3,380,357 - -0.2 3,380,689 - PGA1_c32240 0.19 +0.7 3,380,699 - PGA1_c32240 0.20 -2.7 3,380,699 - PGA1_c32240 0.20 -0.3 3,380,699 - PGA1_c32240 0.20 +0.2 3,380,725 - PGA1_c32240 0.22 +1.1 3,380,751 + PGA1_c32240 0.24 -1.3 3,380,760 + PGA1_c32240 0.24 +0.1 3,380,760 + PGA1_c32240 0.24 +0.4 3,380,862 + PGA1_c32240 0.33 +0.3 3,380,894 + PGA1_c32240 0.35 -0.8 3,380,902 - PGA1_c32240 0.36 +0.5 3,381,037 + PGA1_c32240 0.46 -1.4 3,381,040 - PGA1_c32240 0.47 -2.0 3,381,066 + PGA1_c32240 0.49 -1.0 3,381,066 + PGA1_c32240 0.49 +0.7 3,381,066 + PGA1_c32240 0.49 +0.1 3,381,081 + PGA1_c32240 0.50 +0.7 3,381,089 - PGA1_c32240 0.51 -0.3 3,381,134 - PGA1_c32240 0.54 +0.7 3,381,153 - PGA1_c32240 0.56 -1.0 3,381,188 + PGA1_c32240 0.58 +1.2 3,381,209 + PGA1_c32240 0.60 +0.6 3,381,304 + PGA1_c32240 0.68 -2.0 3,381,312 - PGA1_c32240 0.68 +0.4 3,381,312 - PGA1_c32240 0.68 +0.6 3,381,312 - PGA1_c32240 0.68 +0.7
Or see this region's nucleotide sequence