Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32230

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32220 and PGA1_c32230 overlap by 4 nucleotidesPGA1_c32230 and PGA1_c32240 are separated by 63 nucleotides PGA1_c32220: PGA1_c32220 - 5-carboxymethyl-2-hydroxymuconic semialdehyde dehydrogenase HpcC, at 3,378,491 to 3,380,002 _c32220 PGA1_c32230: PGA1_c32230 - putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase, at 3,379,999 to 3,380,388 _c32230 PGA1_c32240: PGA1_c32240 - Uncharacterized conserved protein, at 3,380,452 to 3,381,711 _c32240 Position (kb) 3379 3380 3381Strain fitness (log2 ratio) -2 -1 0 1 2at 3379.028 kb on - strand, within PGA1_c32220at 3379.111 kb on - strand, within PGA1_c32220at 3379.111 kb on - strand, within PGA1_c32220at 3379.111 kb on - strand, within PGA1_c32220at 3379.215 kb on - strand, within PGA1_c32220at 3379.255 kb on + strand, within PGA1_c32220at 3379.279 kb on - strand, within PGA1_c32220at 3379.292 kb on - strand, within PGA1_c32220at 3379.298 kb on + strand, within PGA1_c32220at 3379.306 kb on - strand, within PGA1_c32220at 3379.358 kb on - strand, within PGA1_c32220at 3379.370 kb on - strand, within PGA1_c32220at 3379.431 kb on + strand, within PGA1_c32220at 3379.431 kb on + strand, within PGA1_c32220at 3379.527 kb on - strand, within PGA1_c32220at 3379.537 kb on + strand, within PGA1_c32220at 3379.537 kb on + strand, within PGA1_c32220at 3379.582 kb on + strand, within PGA1_c32220at 3379.585 kb on - strand, within PGA1_c32220at 3379.585 kb on - strand, within PGA1_c32220at 3379.587 kb on + strand, within PGA1_c32220at 3379.592 kb on + strand, within PGA1_c32220at 3379.592 kb on + strand, within PGA1_c32220at 3379.600 kb on - strand, within PGA1_c32220at 3379.717 kb on + strand, within PGA1_c32220at 3379.717 kb on + strand, within PGA1_c32220at 3379.717 kb on + strand, within PGA1_c32220at 3379.729 kb on + strand, within PGA1_c32220at 3379.798 kb on - strand, within PGA1_c32220at 3379.798 kb on - strand, within PGA1_c32220at 3379.810 kb on - strand, within PGA1_c32220at 3379.816 kb on + strand, within PGA1_c32220at 3379.823 kb on - strand, within PGA1_c32220at 3379.853 kb on - strandat 3379.959 kb on + strandat 3379.962 kb on - strandat 3379.997 kb on + strandat 3380.004 kb on - strandat 3380.005 kb on - strandat 3380.016 kb on - strandat 3380.021 kb on - strandat 3380.049 kb on + strand, within PGA1_c32230at 3380.078 kb on - strand, within PGA1_c32230at 3380.100 kb on + strand, within PGA1_c32230at 3380.106 kb on - strand, within PGA1_c32230at 3380.153 kb on - strand, within PGA1_c32230at 3380.326 kb on - strand, within PGA1_c32230at 3380.328 kb on + strand, within PGA1_c32230at 3380.348 kb on + strand, within PGA1_c32230at 3380.349 kb on + strand, within PGA1_c32230at 3380.357 kb on - strandat 3380.689 kb on - strand, within PGA1_c32240at 3380.699 kb on - strand, within PGA1_c32240at 3380.699 kb on - strand, within PGA1_c32240at 3380.699 kb on - strand, within PGA1_c32240at 3380.725 kb on - strand, within PGA1_c32240at 3380.751 kb on + strand, within PGA1_c32240at 3380.760 kb on + strand, within PGA1_c32240at 3380.760 kb on + strand, within PGA1_c32240at 3380.862 kb on + strand, within PGA1_c32240at 3380.894 kb on + strand, within PGA1_c32240at 3380.902 kb on - strand, within PGA1_c32240at 3381.037 kb on + strand, within PGA1_c32240at 3381.040 kb on - strand, within PGA1_c32240at 3381.066 kb on + strand, within PGA1_c32240at 3381.066 kb on + strand, within PGA1_c32240at 3381.066 kb on + strand, within PGA1_c32240at 3381.081 kb on + strand, within PGA1_c32240at 3381.089 kb on - strand, within PGA1_c32240at 3381.134 kb on - strand, within PGA1_c32240at 3381.153 kb on - strand, within PGA1_c32240at 3381.188 kb on + strand, within PGA1_c32240at 3381.209 kb on + strand, within PGA1_c32240at 3381.304 kb on + strand, within PGA1_c32240at 3381.312 kb on - strand, within PGA1_c32240at 3381.312 kb on - strand, within PGA1_c32240at 3381.312 kb on - strand, within PGA1_c32240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,379,028 - PGA1_c32220 0.36 +0.0
3,379,111 - PGA1_c32220 0.41 -0.8
3,379,111 - PGA1_c32220 0.41 +0.6
3,379,111 - PGA1_c32220 0.41 -1.8
3,379,215 - PGA1_c32220 0.48 -0.8
3,379,255 + PGA1_c32220 0.51 -0.5
3,379,279 - PGA1_c32220 0.52 +0.1
3,379,292 - PGA1_c32220 0.53 +0.4
3,379,298 + PGA1_c32220 0.53 +0.9
3,379,306 - PGA1_c32220 0.54 +2.0
3,379,358 - PGA1_c32220 0.57 +0.4
3,379,370 - PGA1_c32220 0.58 -0.2
3,379,431 + PGA1_c32220 0.62 -0.8
3,379,431 + PGA1_c32220 0.62 -1.2
3,379,527 - PGA1_c32220 0.69 -0.3
3,379,537 + PGA1_c32220 0.69 -0.9
3,379,537 + PGA1_c32220 0.69 -1.6
3,379,582 + PGA1_c32220 0.72 -0.2
3,379,585 - PGA1_c32220 0.72 -2.4
3,379,585 - PGA1_c32220 0.72 +1.2
3,379,587 + PGA1_c32220 0.72 -1.0
3,379,592 + PGA1_c32220 0.73 -1.1
3,379,592 + PGA1_c32220 0.73 -0.9
3,379,600 - PGA1_c32220 0.73 +0.4
3,379,717 + PGA1_c32220 0.81 +0.2
3,379,717 + PGA1_c32220 0.81 -0.8
3,379,717 + PGA1_c32220 0.81 +1.1
3,379,729 + PGA1_c32220 0.82 +1.4
3,379,798 - PGA1_c32220 0.86 +0.7
3,379,798 - PGA1_c32220 0.86 +0.0
3,379,810 - PGA1_c32220 0.87 -2.5
3,379,816 + PGA1_c32220 0.88 -0.2
3,379,823 - PGA1_c32220 0.88 -0.6
3,379,853 - -0.7
3,379,959 + +0.4
3,379,962 - +0.5
3,379,997 + +2.0
3,380,004 - -0.6
3,380,005 - +0.8
3,380,016 - -0.2
3,380,021 - +0.2
3,380,049 + PGA1_c32230 0.13 -1.1
3,380,078 - PGA1_c32230 0.20 +1.2
3,380,100 + PGA1_c32230 0.26 -2.1
3,380,106 - PGA1_c32230 0.27 -0.9
3,380,153 - PGA1_c32230 0.39 +0.1
3,380,326 - PGA1_c32230 0.84 -0.5
3,380,328 + PGA1_c32230 0.84 +1.2
3,380,348 + PGA1_c32230 0.89 -1.5
3,380,349 + PGA1_c32230 0.90 -0.9
3,380,357 - -0.2
3,380,689 - PGA1_c32240 0.19 +0.7
3,380,699 - PGA1_c32240 0.20 -2.7
3,380,699 - PGA1_c32240 0.20 -0.3
3,380,699 - PGA1_c32240 0.20 +0.2
3,380,725 - PGA1_c32240 0.22 +1.1
3,380,751 + PGA1_c32240 0.24 -1.3
3,380,760 + PGA1_c32240 0.24 +0.1
3,380,760 + PGA1_c32240 0.24 +0.4
3,380,862 + PGA1_c32240 0.33 +0.3
3,380,894 + PGA1_c32240 0.35 -0.8
3,380,902 - PGA1_c32240 0.36 +0.5
3,381,037 + PGA1_c32240 0.46 -1.4
3,381,040 - PGA1_c32240 0.47 -2.0
3,381,066 + PGA1_c32240 0.49 -1.0
3,381,066 + PGA1_c32240 0.49 +0.7
3,381,066 + PGA1_c32240 0.49 +0.1
3,381,081 + PGA1_c32240 0.50 +0.7
3,381,089 - PGA1_c32240 0.51 -0.3
3,381,134 - PGA1_c32240 0.54 +0.7
3,381,153 - PGA1_c32240 0.56 -1.0
3,381,188 + PGA1_c32240 0.58 +1.2
3,381,209 + PGA1_c32240 0.60 +0.6
3,381,304 + PGA1_c32240 0.68 -2.0
3,381,312 - PGA1_c32240 0.68 +0.4
3,381,312 - PGA1_c32240 0.68 +0.6
3,381,312 - PGA1_c32240 0.68 +0.7

Or see this region's nucleotide sequence