Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29260

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29240 and PGA1_c29250 are separated by 186 nucleotidesPGA1_c29250 and PGA1_c29260 are separated by 24 nucleotidesPGA1_c29260 and PGA1_c29270 overlap by 4 nucleotides PGA1_c29240: PGA1_c29240 - hypothetical protein, at 3,060,122 to 3,060,448 _c29240 PGA1_c29250: PGA1_c29250 - putative haloacid dehalogenase-like hydrolase, at 3,060,635 to 3,061,303 _c29250 PGA1_c29260: PGA1_c29260 - ribosomal RNA small subunit methyltransferase D, at 3,061,328 to 3,061,882 _c29260 PGA1_c29270: PGA1_c29270 - rhodocoxin reductase ThcD, at 3,061,879 to 3,063,090 _c29270 Position (kb) 3061 3062Strain fitness (log2 ratio) -2 -1 0 1at 3060.359 kb on - strand, within PGA1_c29240at 3060.400 kb on + strand, within PGA1_c29240at 3060.413 kb on + strand, within PGA1_c29240at 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.419 kb on + strandat 3060.421 kb on - strandat 3060.427 kb on - strandat 3060.427 kb on - strandat 3060.427 kb on - strandat 3060.427 kb on - strandat 3060.483 kb on - strandat 3060.483 kb on - strandat 3060.496 kb on + strandat 3060.528 kb on - strandat 3060.543 kb on - strandat 3060.543 kb on - strandat 3060.567 kb on + strandat 3060.567 kb on + strandat 3060.567 kb on + strandat 3060.567 kb on + strandat 3060.572 kb on - strandat 3060.575 kb on - strandat 3060.575 kb on - strandat 3060.575 kb on - strandat 3060.575 kb on - strandat 3060.575 kb on - strandat 3060.575 kb on - strandat 3060.589 kb on + strandat 3060.621 kb on + strandat 3060.621 kb on + strandat 3060.629 kb on - strandat 3060.644 kb on - strandat 3060.648 kb on + strandat 3060.654 kb on - strandat 3060.663 kb on + strandat 3060.751 kb on - strand, within PGA1_c29250at 3060.751 kb on - strand, within PGA1_c29250at 3060.751 kb on - strand, within PGA1_c29250at 3060.751 kb on - strand, within PGA1_c29250at 3060.751 kb on - strand, within PGA1_c29250at 3060.804 kb on + strand, within PGA1_c29250at 3060.850 kb on - strand, within PGA1_c29250at 3060.874 kb on - strand, within PGA1_c29250at 3060.908 kb on - strand, within PGA1_c29250at 3060.928 kb on + strand, within PGA1_c29250at 3060.928 kb on + strand, within PGA1_c29250at 3060.928 kb on + strand, within PGA1_c29250at 3060.936 kb on - strand, within PGA1_c29250at 3061.055 kb on + strand, within PGA1_c29250at 3061.063 kb on - strand, within PGA1_c29250at 3061.068 kb on + strand, within PGA1_c29250at 3061.073 kb on + strand, within PGA1_c29250at 3061.076 kb on - strand, within PGA1_c29250at 3061.169 kb on + strand, within PGA1_c29250at 3061.169 kb on - strand, within PGA1_c29250at 3061.183 kb on + strand, within PGA1_c29250at 3061.191 kb on - strand, within PGA1_c29250at 3061.308 kb on - strandat 3061.308 kb on - strandat 3061.347 kb on + strandat 3061.348 kb on - strandat 3061.350 kb on - strandat 3061.350 kb on - strandat 3061.357 kb on - strandat 3061.732 kb on + strand, within PGA1_c29260at 3061.732 kb on + strand, within PGA1_c29260at 3061.740 kb on - strand, within PGA1_c29260at 3061.740 kb on - strand, within PGA1_c29260at 3061.740 kb on - strand, within PGA1_c29260at 3061.786 kb on - strand, within PGA1_c29260at 3061.805 kb on - strand, within PGA1_c29260at 3061.827 kb on + strandat 3061.834 kb on - strandat 3061.835 kb on - strandat 3061.875 kb on + strandat 3061.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,060,359 - PGA1_c29240 0.72 -0.1
3,060,400 + PGA1_c29240 0.85 -0.9
3,060,413 + PGA1_c29240 0.89 +1.7
3,060,419 + -0.1
3,060,419 + +0.7
3,060,419 + -0.3
3,060,419 + +1.7
3,060,419 + -0.2
3,060,419 + -2.3
3,060,419 + -0.2
3,060,419 + -0.8
3,060,419 + +0.1
3,060,419 + -0.9
3,060,419 + -1.2
3,060,419 + -0.4
3,060,419 + +0.1
3,060,419 + +1.0
3,060,419 + -0.2
3,060,419 + -0.4
3,060,419 + +0.1
3,060,419 + +0.8
3,060,419 + +0.5
3,060,419 + +0.1
3,060,419 + +0.4
3,060,419 + -0.4
3,060,419 + +0.2
3,060,421 - +0.1
3,060,427 - -1.2
3,060,427 - -0.5
3,060,427 - -0.8
3,060,427 - -0.3
3,060,483 - +1.1
3,060,483 - -0.7
3,060,496 + -0.1
3,060,528 - -0.3
3,060,543 - -0.0
3,060,543 - +0.4
3,060,567 + +0.8
3,060,567 + +0.5
3,060,567 + +0.6
3,060,567 + -1.0
3,060,572 - -0.3
3,060,575 - -1.3
3,060,575 - -0.4
3,060,575 - +0.1
3,060,575 - +0.4
3,060,575 - +0.1
3,060,575 - +0.1
3,060,589 + +0.1
3,060,621 + -0.1
3,060,621 + -0.2
3,060,629 - -1.4
3,060,644 - -0.8
3,060,648 + +0.1
3,060,654 - +1.0
3,060,663 + -0.0
3,060,751 - PGA1_c29250 0.17 +0.1
3,060,751 - PGA1_c29250 0.17 -0.7
3,060,751 - PGA1_c29250 0.17 +0.3
3,060,751 - PGA1_c29250 0.17 -0.3
3,060,751 - PGA1_c29250 0.17 -0.9
3,060,804 + PGA1_c29250 0.25 +0.2
3,060,850 - PGA1_c29250 0.32 -0.7
3,060,874 - PGA1_c29250 0.36 +0.2
3,060,908 - PGA1_c29250 0.41 +0.2
3,060,928 + PGA1_c29250 0.44 -0.0
3,060,928 + PGA1_c29250 0.44 -0.9
3,060,928 + PGA1_c29250 0.44 +1.2
3,060,936 - PGA1_c29250 0.45 +1.2
3,061,055 + PGA1_c29250 0.63 +0.1
3,061,063 - PGA1_c29250 0.64 +0.5
3,061,068 + PGA1_c29250 0.65 -2.3
3,061,073 + PGA1_c29250 0.65 -0.3
3,061,076 - PGA1_c29250 0.66 +0.6
3,061,169 + PGA1_c29250 0.80 +0.2
3,061,169 - PGA1_c29250 0.80 -0.6
3,061,183 + PGA1_c29250 0.82 +1.1
3,061,191 - PGA1_c29250 0.83 -0.3
3,061,308 - -0.8
3,061,308 - -0.3
3,061,347 + -0.9
3,061,348 - +0.5
3,061,350 - -2.4
3,061,350 - -0.1
3,061,357 - -0.3
3,061,732 + PGA1_c29260 0.73 -1.5
3,061,732 + PGA1_c29260 0.73 +0.5
3,061,740 - PGA1_c29260 0.74 -1.4
3,061,740 - PGA1_c29260 0.74 -1.2
3,061,740 - PGA1_c29260 0.74 -0.0
3,061,786 - PGA1_c29260 0.83 -0.1
3,061,805 - PGA1_c29260 0.86 -0.4
3,061,827 + +1.2
3,061,834 - -0.2
3,061,835 - -0.3
3,061,875 + +0.0
3,061,875 + +0.3

Or see this region's nucleotide sequence