Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29240 and PGA1_c29250 are separated by 186 nucleotides PGA1_c29250 and PGA1_c29260 are separated by 24 nucleotides PGA1_c29260 and PGA1_c29270 overlap by 4 nucleotides
PGA1_c29240: PGA1_c29240 - hypothetical protein, at 3,060,122 to 3,060,448
_c29240
PGA1_c29250: PGA1_c29250 - putative haloacid dehalogenase-like hydrolase, at 3,060,635 to 3,061,303
_c29250
PGA1_c29260: PGA1_c29260 - ribosomal RNA small subunit methyltransferase D, at 3,061,328 to 3,061,882
_c29260
PGA1_c29270: PGA1_c29270 - rhodocoxin reductase ThcD, at 3,061,879 to 3,063,090
_c29270
Position (kb)
3061
3062 Strain fitness (log2 ratio)
-2
-1
0
1 at 3060.359 kb on - strand, within PGA1_c29240 at 3060.400 kb on + strand, within PGA1_c29240 at 3060.413 kb on + strand, within PGA1_c29240 at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.421 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.483 kb on - strand at 3060.483 kb on - strand at 3060.496 kb on + strand at 3060.528 kb on - strand at 3060.543 kb on - strand at 3060.543 kb on - strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.572 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.589 kb on + strand at 3060.621 kb on + strand at 3060.621 kb on + strand at 3060.629 kb on - strand at 3060.644 kb on - strand at 3060.648 kb on + strand at 3060.654 kb on - strand at 3060.663 kb on + strand at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.804 kb on + strand, within PGA1_c29250 at 3060.850 kb on - strand, within PGA1_c29250 at 3060.874 kb on - strand, within PGA1_c29250 at 3060.908 kb on - strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.936 kb on - strand, within PGA1_c29250 at 3061.055 kb on + strand, within PGA1_c29250 at 3061.063 kb on - strand, within PGA1_c29250 at 3061.068 kb on + strand, within PGA1_c29250 at 3061.073 kb on + strand, within PGA1_c29250 at 3061.076 kb on - strand, within PGA1_c29250 at 3061.169 kb on + strand, within PGA1_c29250 at 3061.169 kb on - strand, within PGA1_c29250 at 3061.183 kb on + strand, within PGA1_c29250 at 3061.191 kb on - strand, within PGA1_c29250 at 3061.308 kb on - strand at 3061.308 kb on - strand at 3061.347 kb on + strand at 3061.348 kb on - strand at 3061.350 kb on - strand at 3061.350 kb on - strand at 3061.357 kb on - strand at 3061.732 kb on + strand, within PGA1_c29260 at 3061.732 kb on + strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.786 kb on - strand, within PGA1_c29260 at 3061.805 kb on - strand, within PGA1_c29260 at 3061.827 kb on + strand at 3061.834 kb on - strand at 3061.835 kb on - strand at 3061.875 kb on + strand at 3061.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,060,359 - PGA1_c29240 0.72 -0.1 3,060,400 + PGA1_c29240 0.85 -0.9 3,060,413 + PGA1_c29240 0.89 +1.7 3,060,419 + -0.1 3,060,419 + +0.7 3,060,419 + -0.3 3,060,419 + +1.7 3,060,419 + -0.2 3,060,419 + -2.3 3,060,419 + -0.2 3,060,419 + -0.8 3,060,419 + +0.1 3,060,419 + -0.9 3,060,419 + -1.2 3,060,419 + -0.4 3,060,419 + +0.1 3,060,419 + +1.0 3,060,419 + -0.2 3,060,419 + -0.4 3,060,419 + +0.1 3,060,419 + +0.8 3,060,419 + +0.5 3,060,419 + +0.1 3,060,419 + +0.4 3,060,419 + -0.4 3,060,419 + +0.2 3,060,421 - +0.1 3,060,427 - -1.2 3,060,427 - -0.5 3,060,427 - -0.8 3,060,427 - -0.3 3,060,483 - +1.1 3,060,483 - -0.7 3,060,496 + -0.1 3,060,528 - -0.3 3,060,543 - -0.0 3,060,543 - +0.4 3,060,567 + +0.8 3,060,567 + +0.5 3,060,567 + +0.6 3,060,567 + -1.0 3,060,572 - -0.3 3,060,575 - -1.3 3,060,575 - -0.4 3,060,575 - +0.1 3,060,575 - +0.4 3,060,575 - +0.1 3,060,575 - +0.1 3,060,589 + +0.1 3,060,621 + -0.1 3,060,621 + -0.2 3,060,629 - -1.4 3,060,644 - -0.8 3,060,648 + +0.1 3,060,654 - +1.0 3,060,663 + -0.0 3,060,751 - PGA1_c29250 0.17 +0.1 3,060,751 - PGA1_c29250 0.17 -0.7 3,060,751 - PGA1_c29250 0.17 +0.3 3,060,751 - PGA1_c29250 0.17 -0.3 3,060,751 - PGA1_c29250 0.17 -0.9 3,060,804 + PGA1_c29250 0.25 +0.2 3,060,850 - PGA1_c29250 0.32 -0.7 3,060,874 - PGA1_c29250 0.36 +0.2 3,060,908 - PGA1_c29250 0.41 +0.2 3,060,928 + PGA1_c29250 0.44 -0.0 3,060,928 + PGA1_c29250 0.44 -0.9 3,060,928 + PGA1_c29250 0.44 +1.2 3,060,936 - PGA1_c29250 0.45 +1.2 3,061,055 + PGA1_c29250 0.63 +0.1 3,061,063 - PGA1_c29250 0.64 +0.5 3,061,068 + PGA1_c29250 0.65 -2.3 3,061,073 + PGA1_c29250 0.65 -0.3 3,061,076 - PGA1_c29250 0.66 +0.6 3,061,169 + PGA1_c29250 0.80 +0.2 3,061,169 - PGA1_c29250 0.80 -0.6 3,061,183 + PGA1_c29250 0.82 +1.1 3,061,191 - PGA1_c29250 0.83 -0.3 3,061,308 - -0.8 3,061,308 - -0.3 3,061,347 + -0.9 3,061,348 - +0.5 3,061,350 - -2.4 3,061,350 - -0.1 3,061,357 - -0.3 3,061,732 + PGA1_c29260 0.73 -1.5 3,061,732 + PGA1_c29260 0.73 +0.5 3,061,740 - PGA1_c29260 0.74 -1.4 3,061,740 - PGA1_c29260 0.74 -1.2 3,061,740 - PGA1_c29260 0.74 -0.0 3,061,786 - PGA1_c29260 0.83 -0.1 3,061,805 - PGA1_c29260 0.86 -0.4 3,061,827 + +1.2 3,061,834 - -0.2 3,061,835 - -0.3 3,061,875 + +0.0 3,061,875 + +0.3
Or see this region's nucleotide sequence