Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29050 and PGA1_c29060 are separated by 101 nucleotides PGA1_c29060 and PGA1_c29070 are separated by 83 nucleotides
PGA1_c29050: PGA1_c29050 - putative carbohydrate kinase, PfkB family, at 3,044,975 to 3,045,964
_c29050
PGA1_c29060: PGA1_c29060 - HTH-type transcriptional regulator PecS, at 3,046,066 to 3,046,554
_c29060
PGA1_c29070: PGA1_c29070 - integral membrane protein PecM, at 3,046,638 to 3,047,507
_c29070
Position (kb)
3046
3047 Strain fitness (log2 ratio)
-2
-1
0
1 at 3045.246 kb on - strand, within PGA1_c29050 at 3045.246 kb on - strand, within PGA1_c29050 at 3045.250 kb on + strand, within PGA1_c29050 at 3045.258 kb on - strand, within PGA1_c29050 at 3045.378 kb on + strand, within PGA1_c29050 at 3045.554 kb on + strand, within PGA1_c29050 at 3045.636 kb on - strand, within PGA1_c29050 at 3045.648 kb on - strand, within PGA1_c29050 at 3045.665 kb on + strand, within PGA1_c29050 at 3045.670 kb on + strand, within PGA1_c29050 at 3045.670 kb on + strand, within PGA1_c29050 at 3045.678 kb on - strand, within PGA1_c29050 at 3045.680 kb on + strand, within PGA1_c29050 at 3045.688 kb on - strand, within PGA1_c29050 at 3045.729 kb on + strand, within PGA1_c29050 at 3045.733 kb on + strand, within PGA1_c29050 at 3045.733 kb on + strand, within PGA1_c29050 at 3045.742 kb on - strand, within PGA1_c29050 at 3045.787 kb on + strand, within PGA1_c29050 at 3045.835 kb on + strand, within PGA1_c29050 at 3045.842 kb on + strand, within PGA1_c29050 at 3045.843 kb on - strand, within PGA1_c29050 at 3045.938 kb on + strand at 3045.941 kb on - strand at 3045.958 kb on + strand at 3045.961 kb on - strand at 3045.967 kb on - strand at 3046.003 kb on + strand at 3046.011 kb on - strand at 3046.084 kb on + strand at 3046.194 kb on + strand, within PGA1_c29060 at 3046.252 kb on - strand, within PGA1_c29060 at 3046.405 kb on + strand, within PGA1_c29060 at 3046.505 kb on - strand, within PGA1_c29060 at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.646 kb on - strand at 3046.651 kb on + strand at 3046.653 kb on - strand at 3046.663 kb on - strand at 3046.688 kb on - strand at 3046.698 kb on - strand at 3046.705 kb on + strand at 3046.816 kb on - strand, within PGA1_c29070 at 3046.981 kb on - strand, within PGA1_c29070 at 3047.030 kb on + strand, within PGA1_c29070 at 3047.044 kb on + strand, within PGA1_c29070 at 3047.120 kb on - strand, within PGA1_c29070 at 3047.136 kb on + strand, within PGA1_c29070 at 3047.263 kb on + strand, within PGA1_c29070 at 3047.264 kb on + strand, within PGA1_c29070 at 3047.384 kb on - strand, within PGA1_c29070 at 3047.384 kb on - strand, within PGA1_c29070 at 3047.428 kb on + strand at 3047.434 kb on + strand at 3047.444 kb on + strand at 3047.452 kb on - strand at 3047.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 3,045,246 - PGA1_c29050 0.27 +0.0 3,045,246 - PGA1_c29050 0.27 +1.4 3,045,250 + PGA1_c29050 0.28 -0.2 3,045,258 - PGA1_c29050 0.29 -0.2 3,045,378 + PGA1_c29050 0.41 +0.7 3,045,554 + PGA1_c29050 0.58 +1.1 3,045,636 - PGA1_c29050 0.67 -1.1 3,045,648 - PGA1_c29050 0.68 +0.1 3,045,665 + PGA1_c29050 0.70 +0.3 3,045,670 + PGA1_c29050 0.70 +1.6 3,045,670 + PGA1_c29050 0.70 -0.2 3,045,678 - PGA1_c29050 0.71 +0.3 3,045,680 + PGA1_c29050 0.71 -0.7 3,045,688 - PGA1_c29050 0.72 -0.2 3,045,729 + PGA1_c29050 0.76 -1.0 3,045,733 + PGA1_c29050 0.77 +0.3 3,045,733 + PGA1_c29050 0.77 -0.2 3,045,742 - PGA1_c29050 0.77 +0.6 3,045,787 + PGA1_c29050 0.82 -1.2 3,045,835 + PGA1_c29050 0.87 -0.6 3,045,842 + PGA1_c29050 0.88 -1.9 3,045,843 - PGA1_c29050 0.88 +0.3 3,045,938 + -0.8 3,045,941 - -0.4 3,045,958 + +0.0 3,045,961 - -0.4 3,045,967 - +0.1 3,046,003 + -0.7 3,046,011 - -0.3 3,046,084 + +1.0 3,046,194 + PGA1_c29060 0.26 +0.1 3,046,252 - PGA1_c29060 0.38 -1.0 3,046,405 + PGA1_c29060 0.69 -0.1 3,046,505 - PGA1_c29060 0.90 -0.8 3,046,638 + -0.2 3,046,638 + -0.5 3,046,638 + -0.2 3,046,645 + -0.7 3,046,645 + +0.7 3,046,645 + +0.4 3,046,646 - -0.9 3,046,651 + -0.2 3,046,653 - +0.8 3,046,663 - +0.4 3,046,688 - -0.4 3,046,698 - -1.0 3,046,705 + -0.5 3,046,816 - PGA1_c29070 0.20 +0.5 3,046,981 - PGA1_c29070 0.39 +0.3 3,047,030 + PGA1_c29070 0.45 +1.0 3,047,044 + PGA1_c29070 0.47 +1.0 3,047,120 - PGA1_c29070 0.55 -0.4 3,047,136 + PGA1_c29070 0.57 -0.1 3,047,263 + PGA1_c29070 0.72 -0.1 3,047,264 + PGA1_c29070 0.72 -1.0 3,047,384 - PGA1_c29070 0.86 -0.2 3,047,384 - PGA1_c29070 0.86 +0.4 3,047,428 + -2.3 3,047,434 + -0.9 3,047,444 + +1.0 3,047,452 - -0.7 3,047,452 - +0.7
Or see this region's nucleotide sequence