Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29060

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29050 and PGA1_c29060 are separated by 101 nucleotidesPGA1_c29060 and PGA1_c29070 are separated by 83 nucleotides PGA1_c29050: PGA1_c29050 - putative carbohydrate kinase, PfkB family, at 3,044,975 to 3,045,964 _c29050 PGA1_c29060: PGA1_c29060 - HTH-type transcriptional regulator PecS, at 3,046,066 to 3,046,554 _c29060 PGA1_c29070: PGA1_c29070 - integral membrane protein PecM, at 3,046,638 to 3,047,507 _c29070 Position (kb) 3046 3047Strain fitness (log2 ratio) -2 -1 0 1at 3045.246 kb on - strand, within PGA1_c29050at 3045.246 kb on - strand, within PGA1_c29050at 3045.250 kb on + strand, within PGA1_c29050at 3045.258 kb on - strand, within PGA1_c29050at 3045.378 kb on + strand, within PGA1_c29050at 3045.554 kb on + strand, within PGA1_c29050at 3045.636 kb on - strand, within PGA1_c29050at 3045.648 kb on - strand, within PGA1_c29050at 3045.665 kb on + strand, within PGA1_c29050at 3045.670 kb on + strand, within PGA1_c29050at 3045.670 kb on + strand, within PGA1_c29050at 3045.678 kb on - strand, within PGA1_c29050at 3045.680 kb on + strand, within PGA1_c29050at 3045.688 kb on - strand, within PGA1_c29050at 3045.729 kb on + strand, within PGA1_c29050at 3045.733 kb on + strand, within PGA1_c29050at 3045.733 kb on + strand, within PGA1_c29050at 3045.742 kb on - strand, within PGA1_c29050at 3045.787 kb on + strand, within PGA1_c29050at 3045.835 kb on + strand, within PGA1_c29050at 3045.842 kb on + strand, within PGA1_c29050at 3045.843 kb on - strand, within PGA1_c29050at 3045.938 kb on + strandat 3045.941 kb on - strandat 3045.958 kb on + strandat 3045.961 kb on - strandat 3045.967 kb on - strandat 3046.003 kb on + strandat 3046.011 kb on - strandat 3046.084 kb on + strandat 3046.194 kb on + strand, within PGA1_c29060at 3046.252 kb on - strand, within PGA1_c29060at 3046.405 kb on + strand, within PGA1_c29060at 3046.505 kb on - strand, within PGA1_c29060at 3046.638 kb on + strandat 3046.638 kb on + strandat 3046.638 kb on + strandat 3046.645 kb on + strandat 3046.645 kb on + strandat 3046.645 kb on + strandat 3046.646 kb on - strandat 3046.651 kb on + strandat 3046.653 kb on - strandat 3046.663 kb on - strandat 3046.688 kb on - strandat 3046.698 kb on - strandat 3046.705 kb on + strandat 3046.816 kb on - strand, within PGA1_c29070at 3046.981 kb on - strand, within PGA1_c29070at 3047.030 kb on + strand, within PGA1_c29070at 3047.044 kb on + strand, within PGA1_c29070at 3047.120 kb on - strand, within PGA1_c29070at 3047.136 kb on + strand, within PGA1_c29070at 3047.263 kb on + strand, within PGA1_c29070at 3047.264 kb on + strand, within PGA1_c29070at 3047.384 kb on - strand, within PGA1_c29070at 3047.384 kb on - strand, within PGA1_c29070at 3047.428 kb on + strandat 3047.434 kb on + strandat 3047.444 kb on + strandat 3047.452 kb on - strandat 3047.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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3,045,246 - PGA1_c29050 0.27 +0.0
3,045,246 - PGA1_c29050 0.27 +1.4
3,045,250 + PGA1_c29050 0.28 -0.2
3,045,258 - PGA1_c29050 0.29 -0.2
3,045,378 + PGA1_c29050 0.41 +0.7
3,045,554 + PGA1_c29050 0.58 +1.1
3,045,636 - PGA1_c29050 0.67 -1.1
3,045,648 - PGA1_c29050 0.68 +0.1
3,045,665 + PGA1_c29050 0.70 +0.3
3,045,670 + PGA1_c29050 0.70 +1.6
3,045,670 + PGA1_c29050 0.70 -0.2
3,045,678 - PGA1_c29050 0.71 +0.3
3,045,680 + PGA1_c29050 0.71 -0.7
3,045,688 - PGA1_c29050 0.72 -0.2
3,045,729 + PGA1_c29050 0.76 -1.0
3,045,733 + PGA1_c29050 0.77 +0.3
3,045,733 + PGA1_c29050 0.77 -0.2
3,045,742 - PGA1_c29050 0.77 +0.6
3,045,787 + PGA1_c29050 0.82 -1.2
3,045,835 + PGA1_c29050 0.87 -0.6
3,045,842 + PGA1_c29050 0.88 -1.9
3,045,843 - PGA1_c29050 0.88 +0.3
3,045,938 + -0.8
3,045,941 - -0.4
3,045,958 + +0.0
3,045,961 - -0.4
3,045,967 - +0.1
3,046,003 + -0.7
3,046,011 - -0.3
3,046,084 + +1.0
3,046,194 + PGA1_c29060 0.26 +0.1
3,046,252 - PGA1_c29060 0.38 -1.0
3,046,405 + PGA1_c29060 0.69 -0.1
3,046,505 - PGA1_c29060 0.90 -0.8
3,046,638 + -0.2
3,046,638 + -0.5
3,046,638 + -0.2
3,046,645 + -0.7
3,046,645 + +0.7
3,046,645 + +0.4
3,046,646 - -0.9
3,046,651 + -0.2
3,046,653 - +0.8
3,046,663 - +0.4
3,046,688 - -0.4
3,046,698 - -1.0
3,046,705 + -0.5
3,046,816 - PGA1_c29070 0.20 +0.5
3,046,981 - PGA1_c29070 0.39 +0.3
3,047,030 + PGA1_c29070 0.45 +1.0
3,047,044 + PGA1_c29070 0.47 +1.0
3,047,120 - PGA1_c29070 0.55 -0.4
3,047,136 + PGA1_c29070 0.57 -0.1
3,047,263 + PGA1_c29070 0.72 -0.1
3,047,264 + PGA1_c29070 0.72 -1.0
3,047,384 - PGA1_c29070 0.86 -0.2
3,047,384 - PGA1_c29070 0.86 +0.4
3,047,428 + -2.3
3,047,434 + -0.9
3,047,444 + +1.0
3,047,452 - -0.7
3,047,452 - +0.7

Or see this region's nucleotide sequence