Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24110 and PGA1_c24120 are separated by 251 nucleotides PGA1_c24120 and PGA1_c24130 are separated by 165 nucleotides PGA1_c24130 and PGA1_c24140 are separated by 9 nucleotides PGA1_c24140 and PGA1_c24150 are separated by 152 nucleotides
PGA1_c24110: PGA1_c24110 - hypothetical protein, at 2,517,042 to 2,517,224
_c24110
PGA1_c24120: PGA1_c24120 - hypothetical protein, at 2,517,476 to 2,517,787
_c24120
PGA1_c24130: PGA1_c24130 - transcriptional regulator, LysR family, at 2,517,953 to 2,518,930
_c24130
PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380
_c24140
PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003
_c24150
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2516.956 kb on - strand at 2517.032 kb on - strand at 2517.032 kb on - strand at 2517.050 kb on + strand at 2517.050 kb on + strand at 2517.050 kb on + strand at 2517.071 kb on - strand, within PGA1_c24110 at 2517.095 kb on + strand, within PGA1_c24110 at 2517.098 kb on - strand, within PGA1_c24110 at 2517.101 kb on + strand, within PGA1_c24110 at 2517.102 kb on + strand, within PGA1_c24110 at 2517.103 kb on - strand, within PGA1_c24110 at 2517.144 kb on - strand, within PGA1_c24110 at 2517.168 kb on + strand, within PGA1_c24110 at 2517.176 kb on - strand, within PGA1_c24110 at 2517.208 kb on + strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.272 kb on + strand at 2517.295 kb on - strand at 2517.388 kb on - strand at 2517.403 kb on + strand at 2517.433 kb on - strand at 2517.433 kb on - strand at 2517.435 kb on + strand at 2517.435 kb on + strand at 2517.440 kb on + strand at 2517.440 kb on + strand at 2517.443 kb on - strand at 2517.448 kb on - strand at 2517.507 kb on - strand at 2517.792 kb on - strand at 2517.794 kb on - strand at 2517.860 kb on + strand at 2517.913 kb on + strand at 2517.937 kb on + strand at 2517.945 kb on - strand at 2517.974 kb on - strand at 2517.974 kb on - strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2518.025 kb on - strand at 2518.037 kb on - strand at 2518.037 kb on - strand at 2518.078 kb on - strand, within PGA1_c24130 at 2518.106 kb on - strand, within PGA1_c24130 at 2518.168 kb on + strand, within PGA1_c24130 at 2518.217 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.306 kb on + strand, within PGA1_c24130 at 2518.696 kb on - strand, within PGA1_c24130 at 2518.828 kb on - strand, within PGA1_c24130 at 2518.841 kb on + strand at 2518.954 kb on + strand at 2518.958 kb on - strand at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2519.020 kb on + strand, within PGA1_c24140 at 2519.032 kb on + strand, within PGA1_c24140 at 2519.037 kb on - strand, within PGA1_c24140 at 2519.044 kb on + strand, within PGA1_c24140 at 2519.097 kb on - strand, within PGA1_c24140 at 2519.123 kb on + strand, within PGA1_c24140 at 2519.132 kb on - strand, within PGA1_c24140 at 2519.144 kb on - strand, within PGA1_c24140 at 2519.174 kb on + strand, within PGA1_c24140 at 2519.182 kb on - strand, within PGA1_c24140 at 2519.272 kb on + strand, within PGA1_c24140 at 2519.293 kb on + strand, within PGA1_c24140 at 2519.318 kb on + strand, within PGA1_c24140 at 2519.397 kb on - strand at 2519.397 kb on - strand at 2519.399 kb on + strand at 2519.401 kb on + strand at 2519.404 kb on - strand at 2519.432 kb on + strand at 2519.432 kb on + strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.473 kb on + strand at 2519.500 kb on - strand at 2519.528 kb on + strand at 2519.534 kb on + strand at 2519.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 2,516,956 - -0.4 2,517,032 - -2.4 2,517,032 - -2.0 2,517,050 + -0.4 2,517,050 + -0.4 2,517,050 + +0.5 2,517,071 - PGA1_c24110 0.16 -0.5 2,517,095 + PGA1_c24110 0.29 -0.4 2,517,098 - PGA1_c24110 0.31 -0.9 2,517,101 + PGA1_c24110 0.32 -0.6 2,517,102 + PGA1_c24110 0.33 -0.1 2,517,103 - PGA1_c24110 0.33 +0.4 2,517,144 - PGA1_c24110 0.56 +1.0 2,517,168 + PGA1_c24110 0.69 -2.0 2,517,176 - PGA1_c24110 0.73 -0.2 2,517,208 + -0.6 2,517,216 - +0.1 2,517,216 - -0.5 2,517,216 - +0.5 2,517,216 - -0.5 2,517,272 + +2.1 2,517,295 - -0.1 2,517,388 - +0.2 2,517,403 + -1.1 2,517,433 - -1.5 2,517,433 - -0.1 2,517,435 + -3.0 2,517,435 + +0.0 2,517,440 + -0.9 2,517,440 + -1.5 2,517,443 - -1.2 2,517,448 - -1.1 2,517,507 - -1.2 2,517,792 - +0.6 2,517,794 - -1.9 2,517,860 + -1.0 2,517,913 + +0.5 2,517,937 + -0.2 2,517,945 - +0.7 2,517,974 - +0.5 2,517,974 - -0.1 2,517,981 + +0.7 2,517,981 + -1.6 2,517,981 + -0.1 2,517,981 + +1.9 2,517,981 + +0.3 2,517,981 + +0.1 2,517,981 + -0.2 2,517,981 + +0.1 2,517,981 + +0.2 2,517,981 + -0.8 2,517,981 + -0.1 2,517,981 + +0.4 2,517,981 + -0.3 2,517,989 - -0.4 2,517,989 - +2.1 2,517,989 - -0.1 2,517,989 - -2.2 2,517,989 - +0.1 2,517,989 - -0.3 2,517,989 - -0.1 2,517,989 - -0.7 2,517,989 - +0.0 2,517,989 - +1.6 2,517,989 - -1.9 2,517,989 - -0.5 2,517,989 - +1.6 2,517,989 - +0.6 2,518,025 - +0.2 2,518,037 - +0.7 2,518,037 - +0.4 2,518,078 - PGA1_c24130 0.13 +0.2 2,518,106 - PGA1_c24130 0.16 +0.1 2,518,168 + PGA1_c24130 0.22 -0.3 2,518,217 - PGA1_c24130 0.27 -1.2 2,518,242 - PGA1_c24130 0.30 -2.0 2,518,242 - PGA1_c24130 0.30 -0.8 2,518,306 + PGA1_c24130 0.36 +0.0 2,518,696 - PGA1_c24130 0.76 -2.9 2,518,828 - PGA1_c24130 0.89 -0.0 2,518,841 + -0.8 2,518,954 + +0.2 2,518,958 - -0.1 2,518,984 + PGA1_c24140 0.10 -0.1 2,518,984 + PGA1_c24140 0.10 -0.9 2,518,984 + PGA1_c24140 0.10 -0.7 2,518,984 + PGA1_c24140 0.10 +0.6 2,518,984 + PGA1_c24140 0.10 -2.7 2,519,020 + PGA1_c24140 0.18 -0.1 2,519,032 + PGA1_c24140 0.21 +0.6 2,519,037 - PGA1_c24140 0.22 -2.0 2,519,044 + PGA1_c24140 0.24 -1.0 2,519,097 - PGA1_c24140 0.36 -1.2 2,519,123 + PGA1_c24140 0.41 -0.1 2,519,132 - PGA1_c24140 0.44 -0.7 2,519,144 - PGA1_c24140 0.46 +0.1 2,519,174 + PGA1_c24140 0.53 +0.9 2,519,182 - PGA1_c24140 0.55 +0.5 2,519,272 + PGA1_c24140 0.75 +0.4 2,519,293 + PGA1_c24140 0.80 +0.7 2,519,318 + PGA1_c24140 0.86 +0.5 2,519,397 - -0.2 2,519,397 - -0.0 2,519,399 + +0.5 2,519,401 + -0.9 2,519,404 - -1.2 2,519,432 + +0.9 2,519,432 + +0.1 2,519,440 - -0.5 2,519,440 - -0.1 2,519,440 - -0.1 2,519,440 - +0.7 2,519,473 + +0.1 2,519,500 - +0.2 2,519,528 + +0.9 2,519,534 + +0.8 2,519,572 - -0.3
Or see this region's nucleotide sequence