Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22850 and PGA1_c22860 overlap by 8 nucleotides PGA1_c22860 and PGA1_c22870 overlap by 8 nucleotides
PGA1_c22850: PGA1_c22850 - type IV secretion system protein VirB, at 2,367,307 to 2,369,673
_c22850
PGA1_c22860: PGA1_c22860 - hypothetical protein, at 2,369,666 to 2,369,824
_c22860
PGA1_c22870: PGA1_c22870 - lytic transglycosylase-like protein, at 2,369,817 to 2,370,965
_c22870
Position (kb)
2369
2370 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2368.666 kb on - strand, within PGA1_c22850 at 2368.755 kb on + strand, within PGA1_c22850 at 2368.755 kb on + strand, within PGA1_c22850 at 2368.763 kb on - strand, within PGA1_c22850 at 2368.763 kb on - strand, within PGA1_c22850 at 2368.802 kb on + strand, within PGA1_c22850 at 2368.840 kb on - strand, within PGA1_c22850 at 2368.919 kb on + strand, within PGA1_c22850 at 2368.963 kb on - strand, within PGA1_c22850 at 2368.972 kb on - strand, within PGA1_c22850 at 2369.012 kb on + strand, within PGA1_c22850 at 2369.037 kb on + strand, within PGA1_c22850 at 2369.045 kb on - strand, within PGA1_c22850 at 2369.062 kb on + strand, within PGA1_c22850 at 2369.181 kb on - strand, within PGA1_c22850 at 2369.217 kb on + strand, within PGA1_c22850 at 2369.222 kb on + strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.225 kb on - strand, within PGA1_c22850 at 2369.257 kb on - strand, within PGA1_c22850 at 2369.306 kb on - strand, within PGA1_c22850 at 2369.452 kb on + strand at 2369.487 kb on + strand at 2369.535 kb on + strand at 2369.542 kb on + strand at 2369.579 kb on + strand at 2369.582 kb on + strand at 2369.661 kb on + strand at 2369.696 kb on - strand, within PGA1_c22860 at 2369.709 kb on - strand, within PGA1_c22860 at 2369.787 kb on - strand, within PGA1_c22860 at 2369.802 kb on - strand, within PGA1_c22860 at 2369.840 kb on - strand at 2369.847 kb on + strand at 2369.847 kb on + strand at 2369.865 kb on - strand at 2369.880 kb on + strand at 2369.928 kb on + strand at 2369.936 kb on + strand, within PGA1_c22870 at 2369.992 kb on + strand, within PGA1_c22870 at 2370.000 kb on - strand, within PGA1_c22870 at 2370.007 kb on + strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.170 kb on - strand, within PGA1_c22870 at 2370.356 kb on + strand, within PGA1_c22870 at 2370.362 kb on + strand, within PGA1_c22870 at 2370.373 kb on + strand, within PGA1_c22870 at 2370.376 kb on - strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.378 kb on + strand, within PGA1_c22870 at 2370.386 kb on - strand, within PGA1_c22870 at 2370.386 kb on - strand, within PGA1_c22870 at 2370.525 kb on + strand, within PGA1_c22870 at 2370.525 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.571 kb on + strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.579 kb on - strand, within PGA1_c22870 at 2370.581 kb on - strand, within PGA1_c22870 at 2370.675 kb on + strand, within PGA1_c22870 at 2370.685 kb on + strand, within PGA1_c22870 at 2370.693 kb on - strand, within PGA1_c22870 at 2370.701 kb on - strand, within PGA1_c22870 at 2370.765 kb on - strand, within PGA1_c22870 at 2370.775 kb on + strand, within PGA1_c22870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 2,368,666 - PGA1_c22850 0.57 -0.6 2,368,755 + PGA1_c22850 0.61 -0.2 2,368,755 + PGA1_c22850 0.61 -1.9 2,368,763 - PGA1_c22850 0.62 +0.4 2,368,763 - PGA1_c22850 0.62 +0.3 2,368,802 + PGA1_c22850 0.63 -0.4 2,368,840 - PGA1_c22850 0.65 +0.1 2,368,919 + PGA1_c22850 0.68 +0.4 2,368,963 - PGA1_c22850 0.70 +0.0 2,368,972 - PGA1_c22850 0.70 -1.4 2,369,012 + PGA1_c22850 0.72 +0.2 2,369,037 + PGA1_c22850 0.73 +0.2 2,369,045 - PGA1_c22850 0.73 -0.7 2,369,062 + PGA1_c22850 0.74 +0.1 2,369,181 - PGA1_c22850 0.79 -0.0 2,369,217 + PGA1_c22850 0.81 +0.9 2,369,222 + PGA1_c22850 0.81 +0.1 2,369,225 - PGA1_c22850 0.81 -0.3 2,369,225 - PGA1_c22850 0.81 -0.0 2,369,225 - PGA1_c22850 0.81 -0.2 2,369,257 - PGA1_c22850 0.82 +1.0 2,369,306 - PGA1_c22850 0.84 +0.9 2,369,452 + -0.3 2,369,487 + -0.5 2,369,535 + -0.5 2,369,542 + -0.3 2,369,579 + -0.0 2,369,582 + +1.2 2,369,661 + +0.0 2,369,696 - PGA1_c22860 0.19 -0.8 2,369,709 - PGA1_c22860 0.27 -0.2 2,369,787 - PGA1_c22860 0.76 -0.2 2,369,802 - PGA1_c22860 0.86 -0.5 2,369,840 - -0.8 2,369,847 + +0.9 2,369,847 + -0.1 2,369,865 - +1.6 2,369,880 + +1.2 2,369,928 + -0.4 2,369,936 + PGA1_c22870 0.10 -2.5 2,369,992 + PGA1_c22870 0.15 -1.8 2,370,000 - PGA1_c22870 0.16 -0.2 2,370,007 + PGA1_c22870 0.17 +0.5 2,370,170 - PGA1_c22870 0.31 +0.8 2,370,170 - PGA1_c22870 0.31 -0.7 2,370,170 - PGA1_c22870 0.31 +0.8 2,370,356 + PGA1_c22870 0.47 -1.7 2,370,362 + PGA1_c22870 0.47 +0.3 2,370,373 + PGA1_c22870 0.48 -0.6 2,370,376 - PGA1_c22870 0.49 +0.8 2,370,378 + PGA1_c22870 0.49 -0.4 2,370,378 + PGA1_c22870 0.49 +0.1 2,370,378 + PGA1_c22870 0.49 +0.0 2,370,378 + PGA1_c22870 0.49 +2.0 2,370,378 + PGA1_c22870 0.49 +0.6 2,370,378 + PGA1_c22870 0.49 -1.1 2,370,378 + PGA1_c22870 0.49 -2.5 2,370,378 + PGA1_c22870 0.49 +0.2 2,370,378 + PGA1_c22870 0.49 +0.5 2,370,386 - PGA1_c22870 0.50 +0.3 2,370,386 - PGA1_c22870 0.50 -1.1 2,370,525 + PGA1_c22870 0.62 +1.5 2,370,525 + PGA1_c22870 0.62 -0.1 2,370,571 + PGA1_c22870 0.66 +1.2 2,370,571 + PGA1_c22870 0.66 +0.4 2,370,571 + PGA1_c22870 0.66 -0.2 2,370,579 - PGA1_c22870 0.66 +0.8 2,370,579 - PGA1_c22870 0.66 +0.2 2,370,579 - PGA1_c22870 0.66 +0.2 2,370,579 - PGA1_c22870 0.66 +1.7 2,370,581 - PGA1_c22870 0.66 -1.0 2,370,675 + PGA1_c22870 0.75 +1.4 2,370,685 + PGA1_c22870 0.76 -0.2 2,370,693 - PGA1_c22870 0.76 -0.0 2,370,701 - PGA1_c22870 0.77 +0.8 2,370,765 - PGA1_c22870 0.83 -0.4 2,370,775 + PGA1_c22870 0.83 -0.4
Or see this region's nucleotide sequence