Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22860

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22850 and PGA1_c22860 overlap by 8 nucleotidesPGA1_c22860 and PGA1_c22870 overlap by 8 nucleotides PGA1_c22850: PGA1_c22850 - type IV secretion system protein VirB, at 2,367,307 to 2,369,673 _c22850 PGA1_c22860: PGA1_c22860 - hypothetical protein, at 2,369,666 to 2,369,824 _c22860 PGA1_c22870: PGA1_c22870 - lytic transglycosylase-like protein, at 2,369,817 to 2,370,965 _c22870 Position (kb) 2369 2370Strain fitness (log2 ratio) -2 -1 0 1 2at 2368.666 kb on - strand, within PGA1_c22850at 2368.755 kb on + strand, within PGA1_c22850at 2368.755 kb on + strand, within PGA1_c22850at 2368.763 kb on - strand, within PGA1_c22850at 2368.763 kb on - strand, within PGA1_c22850at 2368.802 kb on + strand, within PGA1_c22850at 2368.840 kb on - strand, within PGA1_c22850at 2368.919 kb on + strand, within PGA1_c22850at 2368.963 kb on - strand, within PGA1_c22850at 2368.972 kb on - strand, within PGA1_c22850at 2369.012 kb on + strand, within PGA1_c22850at 2369.037 kb on + strand, within PGA1_c22850at 2369.045 kb on - strand, within PGA1_c22850at 2369.062 kb on + strand, within PGA1_c22850at 2369.181 kb on - strand, within PGA1_c22850at 2369.217 kb on + strand, within PGA1_c22850at 2369.222 kb on + strand, within PGA1_c22850at 2369.225 kb on - strand, within PGA1_c22850at 2369.225 kb on - strand, within PGA1_c22850at 2369.225 kb on - strand, within PGA1_c22850at 2369.257 kb on - strand, within PGA1_c22850at 2369.306 kb on - strand, within PGA1_c22850at 2369.452 kb on + strandat 2369.487 kb on + strandat 2369.535 kb on + strandat 2369.542 kb on + strandat 2369.579 kb on + strandat 2369.582 kb on + strandat 2369.661 kb on + strandat 2369.696 kb on - strand, within PGA1_c22860at 2369.709 kb on - strand, within PGA1_c22860at 2369.787 kb on - strand, within PGA1_c22860at 2369.802 kb on - strand, within PGA1_c22860at 2369.840 kb on - strandat 2369.847 kb on + strandat 2369.847 kb on + strandat 2369.865 kb on - strandat 2369.880 kb on + strandat 2369.928 kb on + strandat 2369.936 kb on + strand, within PGA1_c22870at 2369.992 kb on + strand, within PGA1_c22870at 2370.000 kb on - strand, within PGA1_c22870at 2370.007 kb on + strand, within PGA1_c22870at 2370.170 kb on - strand, within PGA1_c22870at 2370.170 kb on - strand, within PGA1_c22870at 2370.170 kb on - strand, within PGA1_c22870at 2370.356 kb on + strand, within PGA1_c22870at 2370.362 kb on + strand, within PGA1_c22870at 2370.373 kb on + strand, within PGA1_c22870at 2370.376 kb on - strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.378 kb on + strand, within PGA1_c22870at 2370.386 kb on - strand, within PGA1_c22870at 2370.386 kb on - strand, within PGA1_c22870at 2370.525 kb on + strand, within PGA1_c22870at 2370.525 kb on + strand, within PGA1_c22870at 2370.571 kb on + strand, within PGA1_c22870at 2370.571 kb on + strand, within PGA1_c22870at 2370.571 kb on + strand, within PGA1_c22870at 2370.579 kb on - strand, within PGA1_c22870at 2370.579 kb on - strand, within PGA1_c22870at 2370.579 kb on - strand, within PGA1_c22870at 2370.579 kb on - strand, within PGA1_c22870at 2370.581 kb on - strand, within PGA1_c22870at 2370.675 kb on + strand, within PGA1_c22870at 2370.685 kb on + strand, within PGA1_c22870at 2370.693 kb on - strand, within PGA1_c22870at 2370.701 kb on - strand, within PGA1_c22870at 2370.765 kb on - strand, within PGA1_c22870at 2370.775 kb on + strand, within PGA1_c22870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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2,368,666 - PGA1_c22850 0.57 -0.6
2,368,755 + PGA1_c22850 0.61 -0.2
2,368,755 + PGA1_c22850 0.61 -1.9
2,368,763 - PGA1_c22850 0.62 +0.4
2,368,763 - PGA1_c22850 0.62 +0.3
2,368,802 + PGA1_c22850 0.63 -0.4
2,368,840 - PGA1_c22850 0.65 +0.1
2,368,919 + PGA1_c22850 0.68 +0.4
2,368,963 - PGA1_c22850 0.70 +0.0
2,368,972 - PGA1_c22850 0.70 -1.4
2,369,012 + PGA1_c22850 0.72 +0.2
2,369,037 + PGA1_c22850 0.73 +0.2
2,369,045 - PGA1_c22850 0.73 -0.7
2,369,062 + PGA1_c22850 0.74 +0.1
2,369,181 - PGA1_c22850 0.79 -0.0
2,369,217 + PGA1_c22850 0.81 +0.9
2,369,222 + PGA1_c22850 0.81 +0.1
2,369,225 - PGA1_c22850 0.81 -0.3
2,369,225 - PGA1_c22850 0.81 -0.0
2,369,225 - PGA1_c22850 0.81 -0.2
2,369,257 - PGA1_c22850 0.82 +1.0
2,369,306 - PGA1_c22850 0.84 +0.9
2,369,452 + -0.3
2,369,487 + -0.5
2,369,535 + -0.5
2,369,542 + -0.3
2,369,579 + -0.0
2,369,582 + +1.2
2,369,661 + +0.0
2,369,696 - PGA1_c22860 0.19 -0.8
2,369,709 - PGA1_c22860 0.27 -0.2
2,369,787 - PGA1_c22860 0.76 -0.2
2,369,802 - PGA1_c22860 0.86 -0.5
2,369,840 - -0.8
2,369,847 + +0.9
2,369,847 + -0.1
2,369,865 - +1.6
2,369,880 + +1.2
2,369,928 + -0.4
2,369,936 + PGA1_c22870 0.10 -2.5
2,369,992 + PGA1_c22870 0.15 -1.8
2,370,000 - PGA1_c22870 0.16 -0.2
2,370,007 + PGA1_c22870 0.17 +0.5
2,370,170 - PGA1_c22870 0.31 +0.8
2,370,170 - PGA1_c22870 0.31 -0.7
2,370,170 - PGA1_c22870 0.31 +0.8
2,370,356 + PGA1_c22870 0.47 -1.7
2,370,362 + PGA1_c22870 0.47 +0.3
2,370,373 + PGA1_c22870 0.48 -0.6
2,370,376 - PGA1_c22870 0.49 +0.8
2,370,378 + PGA1_c22870 0.49 -0.4
2,370,378 + PGA1_c22870 0.49 +0.1
2,370,378 + PGA1_c22870 0.49 +0.0
2,370,378 + PGA1_c22870 0.49 +2.0
2,370,378 + PGA1_c22870 0.49 +0.6
2,370,378 + PGA1_c22870 0.49 -1.1
2,370,378 + PGA1_c22870 0.49 -2.5
2,370,378 + PGA1_c22870 0.49 +0.2
2,370,378 + PGA1_c22870 0.49 +0.5
2,370,386 - PGA1_c22870 0.50 +0.3
2,370,386 - PGA1_c22870 0.50 -1.1
2,370,525 + PGA1_c22870 0.62 +1.5
2,370,525 + PGA1_c22870 0.62 -0.1
2,370,571 + PGA1_c22870 0.66 +1.2
2,370,571 + PGA1_c22870 0.66 +0.4
2,370,571 + PGA1_c22870 0.66 -0.2
2,370,579 - PGA1_c22870 0.66 +0.8
2,370,579 - PGA1_c22870 0.66 +0.2
2,370,579 - PGA1_c22870 0.66 +0.2
2,370,579 - PGA1_c22870 0.66 +1.7
2,370,581 - PGA1_c22870 0.66 -1.0
2,370,675 + PGA1_c22870 0.75 +1.4
2,370,685 + PGA1_c22870 0.76 -0.2
2,370,693 - PGA1_c22870 0.76 -0.0
2,370,701 - PGA1_c22870 0.77 +0.8
2,370,765 - PGA1_c22870 0.83 -0.4
2,370,775 + PGA1_c22870 0.83 -0.4

Or see this region's nucleotide sequence