Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2113 and HP15_2114 are separated by 48 nucleotides HP15_2114 and HP15_2115 are separated by 71 nucleotides HP15_2115 and HP15_2116 are separated by 12 nucleotides HP15_2116 and HP15_2117 are separated by 72 nucleotides HP15_2117 and HP15_2118 are separated by 19 nucleotides
HP15_2113: HP15_2113 - heavy-metal transporting P-type ATPase, at 2,211,965 to 2,214,412
_2113
HP15_2114: HP15_2114 - cytochrome oxidase maturation protein, cbb3-type, at 2,214,461 to 2,214,709
_2114
HP15_2115: HP15_2115 - conserved hypothetical protein, membrane, at 2,214,781 to 2,215,395
_2115
HP15_2116: HP15_2116 - PP-loop domain protein, at 2,215,408 to 2,216,322
_2116
HP15_2117: HP15_2117 - transcriptional regulator, TetR family protein, at 2,216,395 to 2,217,039
_2117
HP15_2118: HP15_2118 - heat shock protein DnaJ domain protein, at 2,217,059 to 2,217,733
_2118
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-1
0
1 at 2215.480 kb on - strand at 2215.492 kb on + strand at 2215.846 kb on - strand, within HP15_2116 at 2215.871 kb on - strand, within HP15_2116 at 2216.111 kb on - strand, within HP15_2116 at 2216.116 kb on - strand, within HP15_2116 at 2216.672 kb on - strand, within HP15_2117 at 2216.810 kb on - strand, within HP15_2117 at 2216.915 kb on + strand, within HP15_2117 at 2217.000 kb on + strand at 2217.000 kb on + strand at 2217.056 kb on + strand at 2217.064 kb on - strand at 2217.064 kb on - strand at 2217.167 kb on - strand, within HP15_2118 at 2217.214 kb on + strand, within HP15_2118
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,215,480 - +0.5 2,215,492 + +0.4 2,215,846 - HP15_2116 0.48 -1.0 2,215,871 - HP15_2116 0.51 +0.9 2,216,111 - HP15_2116 0.77 +0.2 2,216,116 - HP15_2116 0.77 +0.2 2,216,672 - HP15_2117 0.43 -1.2 2,216,810 - HP15_2117 0.64 -1.2 2,216,915 + HP15_2117 0.81 +0.2 2,217,000 + -0.2 2,217,000 + -0.4 2,217,056 + +0.0 2,217,064 - +0.2 2,217,064 - +0.2 2,217,167 - HP15_2118 0.16 +0.1 2,217,214 + HP15_2118 0.23 +0.2
Or see this region's nucleotide sequence