Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20320

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20310 and PGA1_c20320 overlap by 4 nucleotidesPGA1_c20320 and PGA1_c20330 are separated by 178 nucleotides PGA1_c20310: PGA1_c20310 - putative metalloprotease, at 2,110,118 to 2,111,506 _c20310 PGA1_c20320: PGA1_c20320 - Protein-disulfide isomerase, at 2,111,503 to 2,112,276 _c20320 PGA1_c20330: PGA1_c20330 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG, at 2,112,455 to 2,113,576 _c20330 Position (kb) 2111 2112 2113Strain fitness (log2 ratio) -3 -2 -1 0 1at 2110.628 kb on - strand, within PGA1_c20310at 2110.628 kb on - strand, within PGA1_c20310at 2110.628 kb on - strand, within PGA1_c20310at 2110.628 kb on - strand, within PGA1_c20310at 2110.635 kb on + strand, within PGA1_c20310at 2110.648 kb on + strand, within PGA1_c20310at 2110.711 kb on - strand, within PGA1_c20310at 2110.715 kb on - strand, within PGA1_c20310at 2110.770 kb on - strand, within PGA1_c20310at 2110.784 kb on + strand, within PGA1_c20310at 2110.852 kb on + strand, within PGA1_c20310at 2110.870 kb on - strand, within PGA1_c20310at 2110.919 kb on + strand, within PGA1_c20310at 2110.942 kb on - strand, within PGA1_c20310at 2110.967 kb on + strand, within PGA1_c20310at 2110.976 kb on + strand, within PGA1_c20310at 2111.021 kb on + strand, within PGA1_c20310at 2111.034 kb on - strand, within PGA1_c20310at 2111.062 kb on - strand, within PGA1_c20310at 2111.070 kb on + strand, within PGA1_c20310at 2111.078 kb on - strand, within PGA1_c20310at 2111.311 kb on - strand, within PGA1_c20310at 2111.345 kb on - strand, within PGA1_c20310at 2111.347 kb on + strand, within PGA1_c20310at 2111.347 kb on + strand, within PGA1_c20310at 2111.355 kb on - strand, within PGA1_c20310at 2111.396 kb on - strandat 2111.403 kb on - strandat 2111.472 kb on + strandat 2111.509 kb on + strandat 2111.549 kb on + strandat 2111.549 kb on + strandat 2111.550 kb on - strandat 2111.550 kb on - strandat 2111.556 kb on - strandat 2111.810 kb on + strand, within PGA1_c20320at 2111.873 kb on - strand, within PGA1_c20320at 2111.941 kb on + strand, within PGA1_c20320at 2111.948 kb on + strand, within PGA1_c20320at 2111.949 kb on - strand, within PGA1_c20320at 2111.956 kb on - strand, within PGA1_c20320at 2111.981 kb on - strand, within PGA1_c20320at 2112.197 kb on + strand, within PGA1_c20320at 2112.215 kb on - strandat 2112.307 kb on - strandat 2112.348 kb on - strandat 2112.404 kb on + strandat 2112.412 kb on - strandat 2112.412 kb on - strandat 2112.412 kb on - strandat 2112.412 kb on - strandat 2112.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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2,110,628 - PGA1_c20310 0.37 -0.1
2,110,628 - PGA1_c20310 0.37 +0.3
2,110,628 - PGA1_c20310 0.37 -0.7
2,110,628 - PGA1_c20310 0.37 -1.1
2,110,635 + PGA1_c20310 0.37 -1.0
2,110,648 + PGA1_c20310 0.38 -0.6
2,110,711 - PGA1_c20310 0.43 -0.5
2,110,715 - PGA1_c20310 0.43 +1.4
2,110,770 - PGA1_c20310 0.47 +0.3
2,110,784 + PGA1_c20310 0.48 -0.9
2,110,852 + PGA1_c20310 0.53 -0.6
2,110,870 - PGA1_c20310 0.54 -1.2
2,110,919 + PGA1_c20310 0.58 +0.5
2,110,942 - PGA1_c20310 0.59 +0.2
2,110,967 + PGA1_c20310 0.61 -0.6
2,110,976 + PGA1_c20310 0.62 -0.3
2,111,021 + PGA1_c20310 0.65 -0.8
2,111,034 - PGA1_c20310 0.66 -0.1
2,111,062 - PGA1_c20310 0.68 -0.3
2,111,070 + PGA1_c20310 0.69 +0.2
2,111,078 - PGA1_c20310 0.69 -0.5
2,111,311 - PGA1_c20310 0.86 +0.3
2,111,345 - PGA1_c20310 0.88 +0.8
2,111,347 + PGA1_c20310 0.88 +0.4
2,111,347 + PGA1_c20310 0.88 -1.0
2,111,355 - PGA1_c20310 0.89 +1.2
2,111,396 - -1.8
2,111,403 - +0.2
2,111,472 + -1.0
2,111,509 + -1.8
2,111,549 + -1.7
2,111,549 + -0.8
2,111,550 - -1.0
2,111,550 - -2.9
2,111,556 - -1.7
2,111,810 + PGA1_c20320 0.40 -0.3
2,111,873 - PGA1_c20320 0.48 -0.9
2,111,941 + PGA1_c20320 0.57 +0.2
2,111,948 + PGA1_c20320 0.57 +1.0
2,111,949 - PGA1_c20320 0.58 -1.0
2,111,956 - PGA1_c20320 0.59 -1.8
2,111,981 - PGA1_c20320 0.62 +0.2
2,112,197 + PGA1_c20320 0.90 -1.2
2,112,215 - -0.8
2,112,307 - -0.8
2,112,348 - +0.0
2,112,404 + -0.7
2,112,412 - +0.3
2,112,412 - +0.5
2,112,412 - -0.1
2,112,412 - +0.7
2,112,485 - -0.7

Or see this region's nucleotide sequence