Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20310 and PGA1_c20320 overlap by 4 nucleotides PGA1_c20320 and PGA1_c20330 are separated by 178 nucleotides
PGA1_c20310: PGA1_c20310 - putative metalloprotease, at 2,110,118 to 2,111,506
_c20310
PGA1_c20320: PGA1_c20320 - Protein-disulfide isomerase, at 2,111,503 to 2,112,276
_c20320
PGA1_c20330: PGA1_c20330 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG, at 2,112,455 to 2,113,576
_c20330
Position (kb)
2111
2112
2113 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2110.628 kb on - strand, within PGA1_c20310 at 2110.628 kb on - strand, within PGA1_c20310 at 2110.628 kb on - strand, within PGA1_c20310 at 2110.628 kb on - strand, within PGA1_c20310 at 2110.635 kb on + strand, within PGA1_c20310 at 2110.648 kb on + strand, within PGA1_c20310 at 2110.711 kb on - strand, within PGA1_c20310 at 2110.715 kb on - strand, within PGA1_c20310 at 2110.770 kb on - strand, within PGA1_c20310 at 2110.784 kb on + strand, within PGA1_c20310 at 2110.852 kb on + strand, within PGA1_c20310 at 2110.870 kb on - strand, within PGA1_c20310 at 2110.919 kb on + strand, within PGA1_c20310 at 2110.942 kb on - strand, within PGA1_c20310 at 2110.967 kb on + strand, within PGA1_c20310 at 2110.976 kb on + strand, within PGA1_c20310 at 2111.021 kb on + strand, within PGA1_c20310 at 2111.034 kb on - strand, within PGA1_c20310 at 2111.062 kb on - strand, within PGA1_c20310 at 2111.070 kb on + strand, within PGA1_c20310 at 2111.078 kb on - strand, within PGA1_c20310 at 2111.311 kb on - strand, within PGA1_c20310 at 2111.345 kb on - strand, within PGA1_c20310 at 2111.347 kb on + strand, within PGA1_c20310 at 2111.347 kb on + strand, within PGA1_c20310 at 2111.355 kb on - strand, within PGA1_c20310 at 2111.396 kb on - strand at 2111.403 kb on - strand at 2111.472 kb on + strand at 2111.509 kb on + strand at 2111.549 kb on + strand at 2111.549 kb on + strand at 2111.550 kb on - strand at 2111.550 kb on - strand at 2111.556 kb on - strand at 2111.810 kb on + strand, within PGA1_c20320 at 2111.873 kb on - strand, within PGA1_c20320 at 2111.941 kb on + strand, within PGA1_c20320 at 2111.948 kb on + strand, within PGA1_c20320 at 2111.949 kb on - strand, within PGA1_c20320 at 2111.956 kb on - strand, within PGA1_c20320 at 2111.981 kb on - strand, within PGA1_c20320 at 2112.197 kb on + strand, within PGA1_c20320 at 2112.215 kb on - strand at 2112.307 kb on - strand at 2112.348 kb on - strand at 2112.404 kb on + strand at 2112.412 kb on - strand at 2112.412 kb on - strand at 2112.412 kb on - strand at 2112.412 kb on - strand at 2112.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 2,110,628 - PGA1_c20310 0.37 -0.1 2,110,628 - PGA1_c20310 0.37 +0.3 2,110,628 - PGA1_c20310 0.37 -0.7 2,110,628 - PGA1_c20310 0.37 -1.1 2,110,635 + PGA1_c20310 0.37 -1.0 2,110,648 + PGA1_c20310 0.38 -0.6 2,110,711 - PGA1_c20310 0.43 -0.5 2,110,715 - PGA1_c20310 0.43 +1.4 2,110,770 - PGA1_c20310 0.47 +0.3 2,110,784 + PGA1_c20310 0.48 -0.9 2,110,852 + PGA1_c20310 0.53 -0.6 2,110,870 - PGA1_c20310 0.54 -1.2 2,110,919 + PGA1_c20310 0.58 +0.5 2,110,942 - PGA1_c20310 0.59 +0.2 2,110,967 + PGA1_c20310 0.61 -0.6 2,110,976 + PGA1_c20310 0.62 -0.3 2,111,021 + PGA1_c20310 0.65 -0.8 2,111,034 - PGA1_c20310 0.66 -0.1 2,111,062 - PGA1_c20310 0.68 -0.3 2,111,070 + PGA1_c20310 0.69 +0.2 2,111,078 - PGA1_c20310 0.69 -0.5 2,111,311 - PGA1_c20310 0.86 +0.3 2,111,345 - PGA1_c20310 0.88 +0.8 2,111,347 + PGA1_c20310 0.88 +0.4 2,111,347 + PGA1_c20310 0.88 -1.0 2,111,355 - PGA1_c20310 0.89 +1.2 2,111,396 - -1.8 2,111,403 - +0.2 2,111,472 + -1.0 2,111,509 + -1.8 2,111,549 + -1.7 2,111,549 + -0.8 2,111,550 - -1.0 2,111,550 - -2.9 2,111,556 - -1.7 2,111,810 + PGA1_c20320 0.40 -0.3 2,111,873 - PGA1_c20320 0.48 -0.9 2,111,941 + PGA1_c20320 0.57 +0.2 2,111,948 + PGA1_c20320 0.57 +1.0 2,111,949 - PGA1_c20320 0.58 -1.0 2,111,956 - PGA1_c20320 0.59 -1.8 2,111,981 - PGA1_c20320 0.62 +0.2 2,112,197 + PGA1_c20320 0.90 -1.2 2,112,215 - -0.8 2,112,307 - -0.8 2,112,348 - +0.0 2,112,404 + -0.7 2,112,412 - +0.3 2,112,412 - +0.5 2,112,412 - -0.1 2,112,412 - +0.7 2,112,485 - -0.7
Or see this region's nucleotide sequence