Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16840 and PGA1_c16850 are separated by 147 nucleotides PGA1_c16850 and PGA1_c16860 are separated by 15 nucleotides
PGA1_c16840: PGA1_c16840 - putative aspartate aminotransferase, at 1,756,331 to 1,757,521
_c16840
PGA1_c16850: PGA1_c16850 - putative peptidyl-prolyl cis-trans isomerase D, at 1,757,669 to 1,759,510
_c16850
PGA1_c16860: PGA1_c16860 - anthranilate synthase component 1, at 1,759,526 to 1,761,037
_c16860
Position (kb)
1757
1758
1759
1760 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1756.757 kb on + strand, within PGA1_c16840 at 1756.770 kb on - strand, within PGA1_c16840 at 1756.785 kb on - strand, within PGA1_c16840 at 1756.820 kb on - strand, within PGA1_c16840 at 1756.827 kb on - strand, within PGA1_c16840 at 1756.855 kb on - strand, within PGA1_c16840 at 1756.893 kb on + strand, within PGA1_c16840 at 1756.901 kb on - strand, within PGA1_c16840 at 1756.901 kb on - strand, within PGA1_c16840 at 1756.901 kb on - strand, within PGA1_c16840 at 1756.908 kb on + strand, within PGA1_c16840 at 1756.909 kb on + strand, within PGA1_c16840 at 1756.921 kb on - strand, within PGA1_c16840 at 1757.024 kb on - strand, within PGA1_c16840 at 1757.104 kb on - strand, within PGA1_c16840 at 1757.104 kb on - strand, within PGA1_c16840 at 1757.267 kb on - strand, within PGA1_c16840 at 1757.291 kb on - strand, within PGA1_c16840 at 1757.351 kb on - strand, within PGA1_c16840 at 1757.369 kb on - strand, within PGA1_c16840 at 1757.393 kb on - strand, within PGA1_c16840 at 1757.443 kb on + strand at 1757.474 kb on + strand at 1757.482 kb on - strand at 1757.506 kb on + strand at 1757.519 kb on - strand at 1757.542 kb on + strand at 1757.558 kb on - strand at 1757.558 kb on - strand at 1757.586 kb on - strand at 1757.665 kb on + strand at 1757.665 kb on + strand at 1757.713 kb on + strand at 1758.094 kb on + strand, within PGA1_c16850 at 1758.102 kb on - strand, within PGA1_c16850 at 1758.337 kb on + strand, within PGA1_c16850 at 1758.672 kb on - strand, within PGA1_c16850 at 1758.741 kb on + strand, within PGA1_c16850 at 1758.741 kb on + strand, within PGA1_c16850 at 1758.749 kb on - strand, within PGA1_c16850 at 1758.818 kb on + strand, within PGA1_c16850 at 1759.089 kb on + strand, within PGA1_c16850 at 1759.205 kb on + strand, within PGA1_c16850 at 1759.218 kb on - strand, within PGA1_c16850 at 1759.220 kb on + strand, within PGA1_c16850 at 1759.228 kb on - strand, within PGA1_c16850 at 1759.228 kb on - strand, within PGA1_c16850 at 1759.278 kb on - strand, within PGA1_c16850 at 1759.313 kb on + strand, within PGA1_c16850
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 1,756,757 + PGA1_c16840 0.36 +0.3 1,756,770 - PGA1_c16840 0.37 +0.9 1,756,785 - PGA1_c16840 0.38 -0.5 1,756,820 - PGA1_c16840 0.41 +0.9 1,756,827 - PGA1_c16840 0.42 -1.1 1,756,855 - PGA1_c16840 0.44 +0.4 1,756,893 + PGA1_c16840 0.47 +0.3 1,756,901 - PGA1_c16840 0.48 +0.1 1,756,901 - PGA1_c16840 0.48 -0.7 1,756,901 - PGA1_c16840 0.48 +0.2 1,756,908 + PGA1_c16840 0.48 -0.3 1,756,909 + PGA1_c16840 0.49 -0.8 1,756,921 - PGA1_c16840 0.50 +0.3 1,757,024 - PGA1_c16840 0.58 -0.7 1,757,104 - PGA1_c16840 0.65 -1.3 1,757,104 - PGA1_c16840 0.65 -1.4 1,757,267 - PGA1_c16840 0.79 +0.4 1,757,291 - PGA1_c16840 0.81 +1.8 1,757,351 - PGA1_c16840 0.86 -0.7 1,757,369 - PGA1_c16840 0.87 +0.9 1,757,393 - PGA1_c16840 0.89 +0.6 1,757,443 + -0.7 1,757,474 + -0.3 1,757,482 - -0.4 1,757,506 + -0.5 1,757,519 - +0.0 1,757,542 + -0.5 1,757,558 - -1.5 1,757,558 - -0.0 1,757,586 - -1.2 1,757,665 + -1.5 1,757,665 + -1.1 1,757,713 + -1.3 1,758,094 + PGA1_c16850 0.23 -0.5 1,758,102 - PGA1_c16850 0.24 -1.5 1,758,337 + PGA1_c16850 0.36 -1.3 1,758,672 - PGA1_c16850 0.54 -1.7 1,758,741 + PGA1_c16850 0.58 -0.7 1,758,741 + PGA1_c16850 0.58 -0.4 1,758,749 - PGA1_c16850 0.59 -2.5 1,758,818 + PGA1_c16850 0.62 -1.7 1,759,089 + PGA1_c16850 0.77 -2.5 1,759,205 + PGA1_c16850 0.83 -1.9 1,759,218 - PGA1_c16850 0.84 -0.8 1,759,220 + PGA1_c16850 0.84 -3.5 1,759,228 - PGA1_c16850 0.85 -2.9 1,759,228 - PGA1_c16850 0.85 -1.8 1,759,278 - PGA1_c16850 0.87 -2.2 1,759,313 + PGA1_c16850 0.89 +1.0
Or see this region's nucleotide sequence