Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16850

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16840 and PGA1_c16850 are separated by 147 nucleotidesPGA1_c16850 and PGA1_c16860 are separated by 15 nucleotides PGA1_c16840: PGA1_c16840 - putative aspartate aminotransferase, at 1,756,331 to 1,757,521 _c16840 PGA1_c16850: PGA1_c16850 - putative peptidyl-prolyl cis-trans isomerase D, at 1,757,669 to 1,759,510 _c16850 PGA1_c16860: PGA1_c16860 - anthranilate synthase component 1, at 1,759,526 to 1,761,037 _c16860 Position (kb) 1757 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1756.757 kb on + strand, within PGA1_c16840at 1756.770 kb on - strand, within PGA1_c16840at 1756.785 kb on - strand, within PGA1_c16840at 1756.820 kb on - strand, within PGA1_c16840at 1756.827 kb on - strand, within PGA1_c16840at 1756.855 kb on - strand, within PGA1_c16840at 1756.893 kb on + strand, within PGA1_c16840at 1756.901 kb on - strand, within PGA1_c16840at 1756.901 kb on - strand, within PGA1_c16840at 1756.901 kb on - strand, within PGA1_c16840at 1756.908 kb on + strand, within PGA1_c16840at 1756.909 kb on + strand, within PGA1_c16840at 1756.921 kb on - strand, within PGA1_c16840at 1757.024 kb on - strand, within PGA1_c16840at 1757.104 kb on - strand, within PGA1_c16840at 1757.104 kb on - strand, within PGA1_c16840at 1757.267 kb on - strand, within PGA1_c16840at 1757.291 kb on - strand, within PGA1_c16840at 1757.351 kb on - strand, within PGA1_c16840at 1757.369 kb on - strand, within PGA1_c16840at 1757.393 kb on - strand, within PGA1_c16840at 1757.443 kb on + strandat 1757.474 kb on + strandat 1757.482 kb on - strandat 1757.506 kb on + strandat 1757.519 kb on - strandat 1757.542 kb on + strandat 1757.558 kb on - strandat 1757.558 kb on - strandat 1757.586 kb on - strandat 1757.665 kb on + strandat 1757.665 kb on + strandat 1757.713 kb on + strandat 1758.094 kb on + strand, within PGA1_c16850at 1758.102 kb on - strand, within PGA1_c16850at 1758.337 kb on + strand, within PGA1_c16850at 1758.672 kb on - strand, within PGA1_c16850at 1758.741 kb on + strand, within PGA1_c16850at 1758.741 kb on + strand, within PGA1_c16850at 1758.749 kb on - strand, within PGA1_c16850at 1758.818 kb on + strand, within PGA1_c16850at 1759.089 kb on + strand, within PGA1_c16850at 1759.205 kb on + strand, within PGA1_c16850at 1759.218 kb on - strand, within PGA1_c16850at 1759.220 kb on + strand, within PGA1_c16850at 1759.228 kb on - strand, within PGA1_c16850at 1759.228 kb on - strand, within PGA1_c16850at 1759.278 kb on - strand, within PGA1_c16850at 1759.313 kb on + strand, within PGA1_c16850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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1,756,757 + PGA1_c16840 0.36 +0.3
1,756,770 - PGA1_c16840 0.37 +0.9
1,756,785 - PGA1_c16840 0.38 -0.5
1,756,820 - PGA1_c16840 0.41 +0.9
1,756,827 - PGA1_c16840 0.42 -1.1
1,756,855 - PGA1_c16840 0.44 +0.4
1,756,893 + PGA1_c16840 0.47 +0.3
1,756,901 - PGA1_c16840 0.48 +0.1
1,756,901 - PGA1_c16840 0.48 -0.7
1,756,901 - PGA1_c16840 0.48 +0.2
1,756,908 + PGA1_c16840 0.48 -0.3
1,756,909 + PGA1_c16840 0.49 -0.8
1,756,921 - PGA1_c16840 0.50 +0.3
1,757,024 - PGA1_c16840 0.58 -0.7
1,757,104 - PGA1_c16840 0.65 -1.3
1,757,104 - PGA1_c16840 0.65 -1.4
1,757,267 - PGA1_c16840 0.79 +0.4
1,757,291 - PGA1_c16840 0.81 +1.8
1,757,351 - PGA1_c16840 0.86 -0.7
1,757,369 - PGA1_c16840 0.87 +0.9
1,757,393 - PGA1_c16840 0.89 +0.6
1,757,443 + -0.7
1,757,474 + -0.3
1,757,482 - -0.4
1,757,506 + -0.5
1,757,519 - +0.0
1,757,542 + -0.5
1,757,558 - -1.5
1,757,558 - -0.0
1,757,586 - -1.2
1,757,665 + -1.5
1,757,665 + -1.1
1,757,713 + -1.3
1,758,094 + PGA1_c16850 0.23 -0.5
1,758,102 - PGA1_c16850 0.24 -1.5
1,758,337 + PGA1_c16850 0.36 -1.3
1,758,672 - PGA1_c16850 0.54 -1.7
1,758,741 + PGA1_c16850 0.58 -0.7
1,758,741 + PGA1_c16850 0.58 -0.4
1,758,749 - PGA1_c16850 0.59 -2.5
1,758,818 + PGA1_c16850 0.62 -1.7
1,759,089 + PGA1_c16850 0.77 -2.5
1,759,205 + PGA1_c16850 0.83 -1.9
1,759,218 - PGA1_c16850 0.84 -0.8
1,759,220 + PGA1_c16850 0.84 -3.5
1,759,228 - PGA1_c16850 0.85 -2.9
1,759,228 - PGA1_c16850 0.85 -1.8
1,759,278 - PGA1_c16850 0.87 -2.2
1,759,313 + PGA1_c16850 0.89 +1.0

Or see this region's nucleotide sequence