Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15200

Experiment: m.b. Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15170 and PGA1_c15180 are separated by 34 nucleotidesPGA1_c15180 and PGA1_c15190 are separated by 112 nucleotidesPGA1_c15190 and PGA1_c15200 are separated by 75 nucleotidesPGA1_c15200 and PGA1_c15210 are separated by 161 nucleotides PGA1_c15170: PGA1_c15170 - 6-phosphogluconolactonase Pgl, at 1,578,147 to 1,578,818 _c15170 PGA1_c15180: PGA1_c15180 - Predicted thioesterase, at 1,578,853 to 1,579,365 _c15180 PGA1_c15190: PGA1_c15190 - tRNA-Gly, at 1,579,478 to 1,579,551 _c15190 PGA1_c15200: PGA1_c15200 - ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data), at 1,579,627 to 1,581,723 _c15200 PGA1_c15210: PGA1_c15210 - putative CoA-transferase, at 1,581,885 to 1,583,060 _c15210 Position (kb) 1579 1580 1581 1582Strain fitness (log2 ratio) -2 -1 0 1 2at 1579.005 kb on + strand, within PGA1_c15180at 1579.005 kb on + strand, within PGA1_c15180at 1579.013 kb on - strand, within PGA1_c15180at 1579.013 kb on - strand, within PGA1_c15180at 1579.013 kb on - strand, within PGA1_c15180at 1579.053 kb on - strand, within PGA1_c15180at 1579.104 kb on - strand, within PGA1_c15180at 1579.104 kb on - strand, within PGA1_c15180at 1579.193 kb on + strand, within PGA1_c15180at 1579.275 kb on + strand, within PGA1_c15180at 1579.294 kb on - strand, within PGA1_c15180at 1579.300 kb on + strand, within PGA1_c15180at 1579.301 kb on - strand, within PGA1_c15180at 1579.301 kb on - strand, within PGA1_c15180at 1579.326 kb on - strandat 1579.326 kb on - strandat 1579.452 kb on + strandat 1579.460 kb on - strandat 1579.460 kb on - strandat 1579.467 kb on - strandat 1579.543 kb on - strand, within PGA1_c15190at 1579.662 kb on + strandat 1579.662 kb on + strandat 1579.675 kb on + strandat 1579.737 kb on + strandat 1579.829 kb on - strandat 1580.102 kb on + strand, within PGA1_c15200at 1580.171 kb on - strand, within PGA1_c15200at 1580.171 kb on - strand, within PGA1_c15200at 1580.216 kb on - strand, within PGA1_c15200at 1580.216 kb on - strand, within PGA1_c15200at 1580.389 kb on - strand, within PGA1_c15200at 1580.455 kb on + strand, within PGA1_c15200at 1580.619 kb on - strand, within PGA1_c15200at 1580.908 kb on + strand, within PGA1_c15200at 1581.027 kb on + strand, within PGA1_c15200at 1581.033 kb on + strand, within PGA1_c15200at 1581.490 kb on + strand, within PGA1_c15200at 1581.654 kb on - strandat 1581.732 kb on - strandat 1581.732 kb on - strandat 1581.852 kb on + strandat 1581.968 kb on - strandat 1582.024 kb on + strand, within PGA1_c15210at 1582.024 kb on + strand, within PGA1_c15210at 1582.032 kb on - strand, within PGA1_c15210at 1582.039 kb on + strand, within PGA1_c15210at 1582.054 kb on - strand, within PGA1_c15210at 1582.083 kb on + strand, within PGA1_c15210at 1582.083 kb on + strand, within PGA1_c15210at 1582.114 kb on + strand, within PGA1_c15210at 1582.141 kb on - strand, within PGA1_c15210at 1582.159 kb on + strand, within PGA1_c15210at 1582.168 kb on + strand, within PGA1_c15210at 1582.168 kb on + strand, within PGA1_c15210at 1582.186 kb on - strand, within PGA1_c15210at 1582.186 kb on - strand, within PGA1_c15210at 1582.197 kb on + strand, within PGA1_c15210at 1582.266 kb on - strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.275 kb on + strand, within PGA1_c15210at 1582.283 kb on - strand, within PGA1_c15210at 1582.283 kb on - strand, within PGA1_c15210at 1582.285 kb on + strand, within PGA1_c15210at 1582.362 kb on - strand, within PGA1_c15210at 1582.400 kb on + strand, within PGA1_c15210at 1582.412 kb on + strand, within PGA1_c15210at 1582.487 kb on - strand, within PGA1_c15210at 1582.659 kb on - strand, within PGA1_c15210at 1582.686 kb on + strand, within PGA1_c15210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
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1,579,005 + PGA1_c15180 0.30 -0.3
1,579,005 + PGA1_c15180 0.30 -0.2
1,579,013 - PGA1_c15180 0.31 -0.7
1,579,013 - PGA1_c15180 0.31 -0.5
1,579,013 - PGA1_c15180 0.31 -0.7
1,579,053 - PGA1_c15180 0.39 +0.6
1,579,104 - PGA1_c15180 0.49 +0.5
1,579,104 - PGA1_c15180 0.49 +0.2
1,579,193 + PGA1_c15180 0.66 +0.2
1,579,275 + PGA1_c15180 0.82 +0.8
1,579,294 - PGA1_c15180 0.86 +0.6
1,579,300 + PGA1_c15180 0.87 -0.4
1,579,301 - PGA1_c15180 0.87 +0.1
1,579,301 - PGA1_c15180 0.87 -0.4
1,579,326 - +0.3
1,579,326 - +0.3
1,579,452 + -0.9
1,579,460 - +0.1
1,579,460 - -0.0
1,579,467 - +0.5
1,579,543 - PGA1_c15190 0.88 -0.4
1,579,662 + +0.1
1,579,662 + -1.4
1,579,675 + -2.6
1,579,737 + -1.7
1,579,829 - -1.7
1,580,102 + PGA1_c15200 0.23 -0.2
1,580,171 - PGA1_c15200 0.26 -0.3
1,580,171 - PGA1_c15200 0.26 -1.3
1,580,216 - PGA1_c15200 0.28 +0.1
1,580,216 - PGA1_c15200 0.28 -0.9
1,580,389 - PGA1_c15200 0.36 -1.1
1,580,455 + PGA1_c15200 0.39 +1.6
1,580,619 - PGA1_c15200 0.47 +0.3
1,580,908 + PGA1_c15200 0.61 -1.1
1,581,027 + PGA1_c15200 0.67 -1.2
1,581,033 + PGA1_c15200 0.67 -1.6
1,581,490 + PGA1_c15200 0.89 +0.6
1,581,654 - -0.7
1,581,732 - -0.4
1,581,732 - -1.2
1,581,852 + -0.6
1,581,968 - +0.1
1,582,024 + PGA1_c15210 0.12 -0.9
1,582,024 + PGA1_c15210 0.12 -0.1
1,582,032 - PGA1_c15210 0.12 +1.9
1,582,039 + PGA1_c15210 0.13 +0.1
1,582,054 - PGA1_c15210 0.14 -0.5
1,582,083 + PGA1_c15210 0.17 -0.4
1,582,083 + PGA1_c15210 0.17 -1.5
1,582,114 + PGA1_c15210 0.19 +0.2
1,582,141 - PGA1_c15210 0.22 +0.1
1,582,159 + PGA1_c15210 0.23 +0.5
1,582,168 + PGA1_c15210 0.24 +0.1
1,582,168 + PGA1_c15210 0.24 -0.2
1,582,186 - PGA1_c15210 0.26 -0.1
1,582,186 - PGA1_c15210 0.26 +0.3
1,582,197 + PGA1_c15210 0.27 +0.3
1,582,266 - PGA1_c15210 0.32 +1.1
1,582,275 + PGA1_c15210 0.33 +0.5
1,582,275 + PGA1_c15210 0.33 -0.9
1,582,275 + PGA1_c15210 0.33 +0.0
1,582,275 + PGA1_c15210 0.33 -2.0
1,582,275 + PGA1_c15210 0.33 -0.2
1,582,275 + PGA1_c15210 0.33 -0.1
1,582,275 + PGA1_c15210 0.33 +0.9
1,582,283 - PGA1_c15210 0.34 -1.1
1,582,283 - PGA1_c15210 0.34 +0.1
1,582,285 + PGA1_c15210 0.34 +0.1
1,582,362 - PGA1_c15210 0.41 -0.2
1,582,400 + PGA1_c15210 0.44 +0.2
1,582,412 + PGA1_c15210 0.45 -0.2
1,582,487 - PGA1_c15210 0.51 -0.1
1,582,659 - PGA1_c15210 0.66 +0.6
1,582,686 + PGA1_c15210 0.68 +0.1

Or see this region's nucleotide sequence