Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15170 and PGA1_c15180 are separated by 34 nucleotides PGA1_c15180 and PGA1_c15190 are separated by 112 nucleotides PGA1_c15190 and PGA1_c15200 are separated by 75 nucleotides PGA1_c15200 and PGA1_c15210 are separated by 161 nucleotides
PGA1_c15170: PGA1_c15170 - 6-phosphogluconolactonase Pgl, at 1,578,147 to 1,578,818
_c15170
PGA1_c15180: PGA1_c15180 - Predicted thioesterase, at 1,578,853 to 1,579,365
_c15180
PGA1_c15190: PGA1_c15190 - tRNA-Gly, at 1,579,478 to 1,579,551
_c15190
PGA1_c15200: PGA1_c15200 - ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data) , at 1,579,627 to 1,581,723
_c15200
PGA1_c15210: PGA1_c15210 - putative CoA-transferase, at 1,581,885 to 1,583,060
_c15210
Position (kb)
1579
1580
1581
1582 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1579.005 kb on + strand, within PGA1_c15180 at 1579.005 kb on + strand, within PGA1_c15180 at 1579.013 kb on - strand, within PGA1_c15180 at 1579.013 kb on - strand, within PGA1_c15180 at 1579.013 kb on - strand, within PGA1_c15180 at 1579.053 kb on - strand, within PGA1_c15180 at 1579.104 kb on - strand, within PGA1_c15180 at 1579.104 kb on - strand, within PGA1_c15180 at 1579.193 kb on + strand, within PGA1_c15180 at 1579.275 kb on + strand, within PGA1_c15180 at 1579.294 kb on - strand, within PGA1_c15180 at 1579.300 kb on + strand, within PGA1_c15180 at 1579.301 kb on - strand, within PGA1_c15180 at 1579.301 kb on - strand, within PGA1_c15180 at 1579.326 kb on - strand at 1579.326 kb on - strand at 1579.452 kb on + strand at 1579.460 kb on - strand at 1579.460 kb on - strand at 1579.467 kb on - strand at 1579.543 kb on - strand, within PGA1_c15190 at 1579.662 kb on + strand at 1579.662 kb on + strand at 1579.675 kb on + strand at 1579.737 kb on + strand at 1579.829 kb on - strand at 1580.102 kb on + strand, within PGA1_c15200 at 1580.171 kb on - strand, within PGA1_c15200 at 1580.171 kb on - strand, within PGA1_c15200 at 1580.216 kb on - strand, within PGA1_c15200 at 1580.216 kb on - strand, within PGA1_c15200 at 1580.389 kb on - strand, within PGA1_c15200 at 1580.455 kb on + strand, within PGA1_c15200 at 1580.619 kb on - strand, within PGA1_c15200 at 1580.908 kb on + strand, within PGA1_c15200 at 1581.027 kb on + strand, within PGA1_c15200 at 1581.033 kb on + strand, within PGA1_c15200 at 1581.490 kb on + strand, within PGA1_c15200 at 1581.654 kb on - strand at 1581.732 kb on - strand at 1581.732 kb on - strand at 1581.852 kb on + strand at 1581.968 kb on - strand at 1582.024 kb on + strand, within PGA1_c15210 at 1582.024 kb on + strand, within PGA1_c15210 at 1582.032 kb on - strand, within PGA1_c15210 at 1582.039 kb on + strand, within PGA1_c15210 at 1582.054 kb on - strand, within PGA1_c15210 at 1582.083 kb on + strand, within PGA1_c15210 at 1582.083 kb on + strand, within PGA1_c15210 at 1582.114 kb on + strand, within PGA1_c15210 at 1582.141 kb on - strand, within PGA1_c15210 at 1582.159 kb on + strand, within PGA1_c15210 at 1582.168 kb on + strand, within PGA1_c15210 at 1582.168 kb on + strand, within PGA1_c15210 at 1582.186 kb on - strand, within PGA1_c15210 at 1582.186 kb on - strand, within PGA1_c15210 at 1582.197 kb on + strand, within PGA1_c15210 at 1582.266 kb on - strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.275 kb on + strand, within PGA1_c15210 at 1582.283 kb on - strand, within PGA1_c15210 at 1582.283 kb on - strand, within PGA1_c15210 at 1582.285 kb on + strand, within PGA1_c15210 at 1582.362 kb on - strand, within PGA1_c15210 at 1582.400 kb on + strand, within PGA1_c15210 at 1582.412 kb on + strand, within PGA1_c15210 at 1582.487 kb on - strand, within PGA1_c15210 at 1582.659 kb on - strand, within PGA1_c15210 at 1582.686 kb on + strand, within PGA1_c15210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 1,579,005 + PGA1_c15180 0.30 -0.3 1,579,005 + PGA1_c15180 0.30 -0.2 1,579,013 - PGA1_c15180 0.31 -0.7 1,579,013 - PGA1_c15180 0.31 -0.5 1,579,013 - PGA1_c15180 0.31 -0.7 1,579,053 - PGA1_c15180 0.39 +0.6 1,579,104 - PGA1_c15180 0.49 +0.5 1,579,104 - PGA1_c15180 0.49 +0.2 1,579,193 + PGA1_c15180 0.66 +0.2 1,579,275 + PGA1_c15180 0.82 +0.8 1,579,294 - PGA1_c15180 0.86 +0.6 1,579,300 + PGA1_c15180 0.87 -0.4 1,579,301 - PGA1_c15180 0.87 +0.1 1,579,301 - PGA1_c15180 0.87 -0.4 1,579,326 - +0.3 1,579,326 - +0.3 1,579,452 + -0.9 1,579,460 - +0.1 1,579,460 - -0.0 1,579,467 - +0.5 1,579,543 - PGA1_c15190 0.88 -0.4 1,579,662 + +0.1 1,579,662 + -1.4 1,579,675 + -2.6 1,579,737 + -1.7 1,579,829 - -1.7 1,580,102 + PGA1_c15200 0.23 -0.2 1,580,171 - PGA1_c15200 0.26 -0.3 1,580,171 - PGA1_c15200 0.26 -1.3 1,580,216 - PGA1_c15200 0.28 +0.1 1,580,216 - PGA1_c15200 0.28 -0.9 1,580,389 - PGA1_c15200 0.36 -1.1 1,580,455 + PGA1_c15200 0.39 +1.6 1,580,619 - PGA1_c15200 0.47 +0.3 1,580,908 + PGA1_c15200 0.61 -1.1 1,581,027 + PGA1_c15200 0.67 -1.2 1,581,033 + PGA1_c15200 0.67 -1.6 1,581,490 + PGA1_c15200 0.89 +0.6 1,581,654 - -0.7 1,581,732 - -0.4 1,581,732 - -1.2 1,581,852 + -0.6 1,581,968 - +0.1 1,582,024 + PGA1_c15210 0.12 -0.9 1,582,024 + PGA1_c15210 0.12 -0.1 1,582,032 - PGA1_c15210 0.12 +1.9 1,582,039 + PGA1_c15210 0.13 +0.1 1,582,054 - PGA1_c15210 0.14 -0.5 1,582,083 + PGA1_c15210 0.17 -0.4 1,582,083 + PGA1_c15210 0.17 -1.5 1,582,114 + PGA1_c15210 0.19 +0.2 1,582,141 - PGA1_c15210 0.22 +0.1 1,582,159 + PGA1_c15210 0.23 +0.5 1,582,168 + PGA1_c15210 0.24 +0.1 1,582,168 + PGA1_c15210 0.24 -0.2 1,582,186 - PGA1_c15210 0.26 -0.1 1,582,186 - PGA1_c15210 0.26 +0.3 1,582,197 + PGA1_c15210 0.27 +0.3 1,582,266 - PGA1_c15210 0.32 +1.1 1,582,275 + PGA1_c15210 0.33 +0.5 1,582,275 + PGA1_c15210 0.33 -0.9 1,582,275 + PGA1_c15210 0.33 +0.0 1,582,275 + PGA1_c15210 0.33 -2.0 1,582,275 + PGA1_c15210 0.33 -0.2 1,582,275 + PGA1_c15210 0.33 -0.1 1,582,275 + PGA1_c15210 0.33 +0.9 1,582,283 - PGA1_c15210 0.34 -1.1 1,582,283 - PGA1_c15210 0.34 +0.1 1,582,285 + PGA1_c15210 0.34 +0.1 1,582,362 - PGA1_c15210 0.41 -0.2 1,582,400 + PGA1_c15210 0.44 +0.2 1,582,412 + PGA1_c15210 0.45 -0.2 1,582,487 - PGA1_c15210 0.51 -0.1 1,582,659 - PGA1_c15210 0.66 +0.6 1,582,686 + PGA1_c15210 0.68 +0.1
Or see this region's nucleotide sequence