Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01460

Experiment: m.b. Chloride 800 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c01440 and PGA1_c01460 are separated by 569 nucleotidesPGA1_c01460 and PGA1_c01470 overlap by 4 nucleotidesPGA1_c01470 and PGA1_c01480 are separated by 6 nucleotides PGA1_c01440: PGA1_c01440 - DNA-directed RNA polymerase subunit beta', at 137,926 to 142,167 _c01440 PGA1_c01460: PGA1_c01460 - Protein of unknown function (DUF3118)., at 142,737 to 143,561 _c01460 PGA1_c01470: PGA1_c01470 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 143,558 to 144,460 _c01470 PGA1_c01480: PGA1_c01480 - Protein of unknown function (DUF3118)., at 144,467 to 145,243 _c01480 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 142.079 kb on + strandat 142.148 kb on + strandat 142.203 kb on - strandat 142.250 kb on + strandat 142.251 kb on - strandat 142.273 kb on - strandat 142.344 kb on - strandat 142.367 kb on + strandat 142.375 kb on - strandat 142.375 kb on - strandat 142.376 kb on + strandat 142.376 kb on + strandat 142.384 kb on - strandat 142.384 kb on - strandat 142.392 kb on - strandat 142.438 kb on - strandat 142.438 kb on - strandat 142.516 kb on - strandat 142.584 kb on - strandat 142.623 kb on - strandat 142.630 kb on - strandat 142.649 kb on - strandat 142.720 kb on + strandat 142.720 kb on + strandat 142.720 kb on + strandat 142.723 kb on - strandat 142.728 kb on - strandat 142.761 kb on + strandat 142.774 kb on + strandat 142.774 kb on + strandat 142.782 kb on - strandat 142.787 kb on - strandat 142.806 kb on - strandat 142.900 kb on + strand, within PGA1_c01460at 142.991 kb on + strand, within PGA1_c01460at 142.991 kb on + strand, within PGA1_c01460at 143.008 kb on + strand, within PGA1_c01460at 143.016 kb on - strand, within PGA1_c01460at 143.070 kb on - strand, within PGA1_c01460at 143.123 kb on - strand, within PGA1_c01460at 143.172 kb on + strand, within PGA1_c01460at 143.180 kb on - strand, within PGA1_c01460at 143.180 kb on - strand, within PGA1_c01460at 143.181 kb on + strand, within PGA1_c01460at 143.210 kb on - strand, within PGA1_c01460at 143.227 kb on + strand, within PGA1_c01460at 143.227 kb on + strand, within PGA1_c01460at 143.227 kb on + strand, within PGA1_c01460at 143.235 kb on - strand, within PGA1_c01460at 143.235 kb on - strand, within PGA1_c01460at 143.235 kb on - strand, within PGA1_c01460at 143.235 kb on - strand, within PGA1_c01460at 143.245 kb on + strand, within PGA1_c01460at 143.372 kb on - strand, within PGA1_c01460at 143.374 kb on + strand, within PGA1_c01460at 143.382 kb on + strand, within PGA1_c01460at 143.405 kb on + strand, within PGA1_c01460at 143.410 kb on + strand, within PGA1_c01460at 143.413 kb on - strand, within PGA1_c01460at 143.462 kb on + strand, within PGA1_c01460at 143.470 kb on - strand, within PGA1_c01460at 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.604 kb on - strandat 143.618 kb on - strandat 143.641 kb on + strandat 143.641 kb on + strandat 143.649 kb on - strand, within PGA1_c01470at 143.649 kb on - strand, within PGA1_c01470at 143.679 kb on + strand, within PGA1_c01470at 143.687 kb on - strand, within PGA1_c01470at 143.778 kb on + strand, within PGA1_c01470at 143.786 kb on + strand, within PGA1_c01470at 143.787 kb on + strand, within PGA1_c01470at 143.788 kb on + strand, within PGA1_c01470at 143.831 kb on + strand, within PGA1_c01470at 143.834 kb on + strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.956 kb on - strand, within PGA1_c01470at 143.983 kb on - strand, within PGA1_c01470at 144.020 kb on + strand, within PGA1_c01470at 144.022 kb on - strand, within PGA1_c01470at 144.028 kb on - strand, within PGA1_c01470at 144.054 kb on + strand, within PGA1_c01470at 144.120 kb on - strand, within PGA1_c01470at 144.136 kb on - strand, within PGA1_c01470at 144.136 kb on - strand, within PGA1_c01470at 144.147 kb on + strand, within PGA1_c01470at 144.155 kb on - strand, within PGA1_c01470at 144.155 kb on - strand, within PGA1_c01470at 144.165 kb on - strand, within PGA1_c01470at 144.173 kb on - strand, within PGA1_c01470at 144.173 kb on - strand, within PGA1_c01470at 144.209 kb on + strand, within PGA1_c01470at 144.210 kb on - strand, within PGA1_c01470at 144.216 kb on + strand, within PGA1_c01470at 144.435 kb on + strandat 144.435 kb on + strandat 144.548 kb on + strand, within PGA1_c01480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
remove
142,079 + -1.1
142,148 + +0.7
142,203 - +1.1
142,250 + -1.0
142,251 - +0.1
142,273 - -0.2
142,344 - +0.0
142,367 + +0.6
142,375 - -0.1
142,375 - -0.5
142,376 + -0.3
142,376 + +0.0
142,384 - -0.1
142,384 - +0.3
142,392 - +1.1
142,438 - +0.8
142,438 - -1.1
142,516 - -0.7
142,584 - -0.7
142,623 - +0.5
142,630 - +0.2
142,649 - +0.5
142,720 + +0.8
142,720 + +2.2
142,720 + +0.5
142,723 - +0.5
142,728 - +0.2
142,761 + -1.0
142,774 + -0.1
142,774 + -1.0
142,782 - -0.6
142,787 - +0.4
142,806 - -0.7
142,900 + PGA1_c01460 0.20 -0.9
142,991 + PGA1_c01460 0.31 +0.1
142,991 + PGA1_c01460 0.31 +0.6
143,008 + PGA1_c01460 0.33 -1.0
143,016 - PGA1_c01460 0.34 +0.2
143,070 - PGA1_c01460 0.40 -1.0
143,123 - PGA1_c01460 0.47 -0.6
143,172 + PGA1_c01460 0.53 +0.2
143,180 - PGA1_c01460 0.54 -0.6
143,180 - PGA1_c01460 0.54 -0.8
143,181 + PGA1_c01460 0.54 -0.6
143,210 - PGA1_c01460 0.57 -0.4
143,227 + PGA1_c01460 0.59 -2.2
143,227 + PGA1_c01460 0.59 -0.8
143,227 + PGA1_c01460 0.59 +2.2
143,235 - PGA1_c01460 0.60 -0.2
143,235 - PGA1_c01460 0.60 -0.6
143,235 - PGA1_c01460 0.60 +0.5
143,235 - PGA1_c01460 0.60 -1.8
143,245 + PGA1_c01460 0.62 -1.2
143,372 - PGA1_c01460 0.77 -1.3
143,374 + PGA1_c01460 0.77 -0.8
143,382 + PGA1_c01460 0.78 -1.4
143,405 + PGA1_c01460 0.81 -0.2
143,410 + PGA1_c01460 0.82 +0.3
143,413 - PGA1_c01460 0.82 -1.6
143,462 + PGA1_c01460 0.88 -2.3
143,470 - PGA1_c01460 0.89 -0.3
143,505 + +0.8
143,505 + +0.3
143,505 + +0.6
143,505 + -0.1
143,505 + -0.8
143,505 + +0.2
143,513 - -1.8
143,513 - +0.8
143,604 - +0.9
143,618 - -0.5
143,641 + +0.7
143,641 + +1.9
143,649 - PGA1_c01470 0.10 +0.0
143,649 - PGA1_c01470 0.10 +0.9
143,679 + PGA1_c01470 0.13 +1.2
143,687 - PGA1_c01470 0.14 +0.3
143,778 + PGA1_c01470 0.24 -0.4
143,786 + PGA1_c01470 0.25 -0.2
143,787 + PGA1_c01470 0.25 -1.7
143,788 + PGA1_c01470 0.25 +0.9
143,831 + PGA1_c01470 0.30 -1.0
143,834 + PGA1_c01470 0.31 -0.4
143,842 - PGA1_c01470 0.31 -0.9
143,842 - PGA1_c01470 0.31 +0.9
143,842 - PGA1_c01470 0.31 +0.0
143,842 - PGA1_c01470 0.31 +1.1
143,956 - PGA1_c01470 0.44 -1.4
143,983 - PGA1_c01470 0.47 -0.3
144,020 + PGA1_c01470 0.51 +0.2
144,022 - PGA1_c01470 0.51 +0.1
144,028 - PGA1_c01470 0.52 -0.3
144,054 + PGA1_c01470 0.55 -0.5
144,120 - PGA1_c01470 0.62 +1.2
144,136 - PGA1_c01470 0.64 +0.1
144,136 - PGA1_c01470 0.64 +0.3
144,147 + PGA1_c01470 0.65 -0.6
144,155 - PGA1_c01470 0.66 -0.5
144,155 - PGA1_c01470 0.66 -0.2
144,165 - PGA1_c01470 0.67 -0.9
144,173 - PGA1_c01470 0.68 -0.2
144,173 - PGA1_c01470 0.68 +0.0
144,209 + PGA1_c01470 0.72 +0.6
144,210 - PGA1_c01470 0.72 -0.3
144,216 + PGA1_c01470 0.73 +0.6
144,435 + -0.1
144,435 + -1.4
144,548 + PGA1_c01480 0.10 +0.4

Or see this region's nucleotide sequence