Experiment: m.b. Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11700 and PGA1_c11710 are separated by 96 nucleotides PGA1_c11710 and PGA1_c11720 are separated by 180 nucleotides
PGA1_c11700: PGA1_c11700 - 5,10-methylenetetrahydrofolate reductase MetF, at 1,211,739 to 1,212,608
_c11700
PGA1_c11710: PGA1_c11710 - transcriptional regulator, LysR family, at 1,212,705 to 1,213,610
_c11710
PGA1_c11720: PGA1_c11720 - inositol-1-monophosphatase SuhB, at 1,213,791 to 1,214,576
_c11720
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1211.709 kb on - strand at 1211.799 kb on + strand at 1211.804 kb on + strand at 1211.807 kb on - strand at 1211.812 kb on - strand at 1211.812 kb on - strand at 1211.812 kb on - strand at 1211.829 kb on - strand, within PGA1_c11700 at 1211.838 kb on + strand, within PGA1_c11700 at 1211.858 kb on + strand, within PGA1_c11700 at 1211.866 kb on - strand, within PGA1_c11700 at 1211.866 kb on - strand, within PGA1_c11700 at 1211.883 kb on - strand, within PGA1_c11700 at 1211.959 kb on - strand, within PGA1_c11700 at 1211.989 kb on + strand, within PGA1_c11700 at 1212.048 kb on - strand, within PGA1_c11700 at 1212.131 kb on - strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.181 kb on - strand, within PGA1_c11700 at 1212.273 kb on - strand, within PGA1_c11700 at 1212.361 kb on - strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.437 kb on - strand, within PGA1_c11700 at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.533 kb on - strand at 1212.533 kb on - strand at 1212.602 kb on - strand at 1212.636 kb on - strand at 1212.687 kb on + strand at 1212.782 kb on + strand at 1212.790 kb on - strand at 1212.846 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.940 kb on - strand, within PGA1_c11710 at 1212.940 kb on - strand, within PGA1_c11710 at 1213.043 kb on - strand, within PGA1_c11710 at 1213.050 kb on + strand, within PGA1_c11710 at 1213.068 kb on - strand, within PGA1_c11710 at 1213.097 kb on - strand, within PGA1_c11710 at 1213.118 kb on + strand, within PGA1_c11710 at 1213.204 kb on - strand, within PGA1_c11710 at 1213.273 kb on + strand, within PGA1_c11710 at 1213.281 kb on + strand, within PGA1_c11710 at 1213.281 kb on - strand, within PGA1_c11710 at 1213.346 kb on + strand, within PGA1_c11710 at 1213.354 kb on - strand, within PGA1_c11710 at 1213.433 kb on + strand, within PGA1_c11710 at 1213.438 kb on + strand, within PGA1_c11710 at 1213.479 kb on - strand, within PGA1_c11710 at 1213.497 kb on + strand, within PGA1_c11710 at 1213.497 kb on - strand, within PGA1_c11710 at 1213.497 kb on - strand, within PGA1_c11710 at 1213.510 kb on + strand, within PGA1_c11710 at 1213.573 kb on - strand at 1213.574 kb on + strand at 1213.645 kb on - strand at 1213.645 kb on - strand at 1213.645 kb on - strand at 1213.654 kb on + strand at 1213.654 kb on + strand at 1213.676 kb on + strand at 1213.706 kb on + strand at 1213.709 kb on - strand at 1214.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM remove 1,211,709 - -1.0 1,211,799 + -1.3 1,211,804 + +0.1 1,211,807 - +0.6 1,211,812 - -0.4 1,211,812 - -1.1 1,211,812 - -0.5 1,211,829 - PGA1_c11700 0.10 -1.2 1,211,838 + PGA1_c11700 0.11 -0.4 1,211,858 + PGA1_c11700 0.14 +0.0 1,211,866 - PGA1_c11700 0.15 -0.4 1,211,866 - PGA1_c11700 0.15 -0.8 1,211,883 - PGA1_c11700 0.17 +0.1 1,211,959 - PGA1_c11700 0.25 -0.8 1,211,989 + PGA1_c11700 0.29 +0.2 1,212,048 - PGA1_c11700 0.36 +0.9 1,212,131 - PGA1_c11700 0.45 -0.0 1,212,147 + PGA1_c11700 0.47 -0.1 1,212,147 + PGA1_c11700 0.47 -0.9 1,212,147 + PGA1_c11700 0.47 +0.2 1,212,147 + PGA1_c11700 0.47 -0.4 1,212,155 - PGA1_c11700 0.48 -0.3 1,212,155 - PGA1_c11700 0.48 +0.3 1,212,155 - PGA1_c11700 0.48 -0.0 1,212,181 - PGA1_c11700 0.51 -0.5 1,212,273 - PGA1_c11700 0.61 +0.2 1,212,361 - PGA1_c11700 0.71 +0.1 1,212,396 + PGA1_c11700 0.76 +0.4 1,212,396 + PGA1_c11700 0.76 -0.1 1,212,396 + PGA1_c11700 0.76 -0.1 1,212,396 + PGA1_c11700 0.76 -0.9 1,212,396 + PGA1_c11700 0.76 -0.1 1,212,396 + PGA1_c11700 0.76 +0.1 1,212,404 - PGA1_c11700 0.76 +2.2 1,212,404 - PGA1_c11700 0.76 -1.6 1,212,404 - PGA1_c11700 0.76 -0.2 1,212,404 - PGA1_c11700 0.76 -0.8 1,212,404 - PGA1_c11700 0.76 +0.2 1,212,404 - PGA1_c11700 0.76 -0.4 1,212,404 - PGA1_c11700 0.76 -0.5 1,212,404 - PGA1_c11700 0.76 -1.8 1,212,437 - PGA1_c11700 0.80 +0.3 1,212,525 + -0.4 1,212,525 + -1.4 1,212,525 + -0.5 1,212,525 + +0.7 1,212,533 - -0.9 1,212,533 - +1.2 1,212,602 - -0.4 1,212,636 - +0.5 1,212,687 + +0.1 1,212,782 + +0.2 1,212,790 - +0.1 1,212,846 + PGA1_c11710 0.16 -0.6 1,212,932 + PGA1_c11710 0.25 +0.0 1,212,932 + PGA1_c11710 0.25 -0.8 1,212,932 + PGA1_c11710 0.25 -0.1 1,212,940 - PGA1_c11710 0.26 -1.6 1,212,940 - PGA1_c11710 0.26 -1.3 1,213,043 - PGA1_c11710 0.37 -0.6 1,213,050 + PGA1_c11710 0.38 +0.4 1,213,068 - PGA1_c11710 0.40 -0.5 1,213,097 - PGA1_c11710 0.43 +0.1 1,213,118 + PGA1_c11710 0.46 +0.5 1,213,204 - PGA1_c11710 0.55 -0.5 1,213,273 + PGA1_c11710 0.63 -0.1 1,213,281 + PGA1_c11710 0.64 -0.9 1,213,281 - PGA1_c11710 0.64 +0.2 1,213,346 + PGA1_c11710 0.71 -0.5 1,213,354 - PGA1_c11710 0.72 -2.4 1,213,433 + PGA1_c11710 0.80 +0.9 1,213,438 + PGA1_c11710 0.81 +0.8 1,213,479 - PGA1_c11710 0.85 +0.8 1,213,497 + PGA1_c11710 0.87 -0.5 1,213,497 - PGA1_c11710 0.87 +1.1 1,213,497 - PGA1_c11710 0.87 +1.0 1,213,510 + PGA1_c11710 0.89 -0.4 1,213,573 - +0.5 1,213,574 + -0.1 1,213,645 - +0.2 1,213,645 - +0.0 1,213,645 - -0.7 1,213,654 + -0.1 1,213,654 + +0.7 1,213,676 + +0.0 1,213,706 + -0.1 1,213,709 - -0.1 1,214,578 - -1.1
Or see this region's nucleotide sequence