Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11710

Experiment: m.b. Chloride 800 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c11700 and PGA1_c11710 are separated by 96 nucleotidesPGA1_c11710 and PGA1_c11720 are separated by 180 nucleotides PGA1_c11700: PGA1_c11700 - 5,10-methylenetetrahydrofolate reductase MetF, at 1,211,739 to 1,212,608 _c11700 PGA1_c11710: PGA1_c11710 - transcriptional regulator, LysR family, at 1,212,705 to 1,213,610 _c11710 PGA1_c11720: PGA1_c11720 - inositol-1-monophosphatase SuhB, at 1,213,791 to 1,214,576 _c11720 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -2 -1 0 1 2at 1211.709 kb on - strandat 1211.799 kb on + strandat 1211.804 kb on + strandat 1211.807 kb on - strandat 1211.812 kb on - strandat 1211.812 kb on - strandat 1211.812 kb on - strandat 1211.829 kb on - strand, within PGA1_c11700at 1211.838 kb on + strand, within PGA1_c11700at 1211.858 kb on + strand, within PGA1_c11700at 1211.866 kb on - strand, within PGA1_c11700at 1211.866 kb on - strand, within PGA1_c11700at 1211.883 kb on - strand, within PGA1_c11700at 1211.959 kb on - strand, within PGA1_c11700at 1211.989 kb on + strand, within PGA1_c11700at 1212.048 kb on - strand, within PGA1_c11700at 1212.131 kb on - strand, within PGA1_c11700at 1212.147 kb on + strand, within PGA1_c11700at 1212.147 kb on + strand, within PGA1_c11700at 1212.147 kb on + strand, within PGA1_c11700at 1212.147 kb on + strand, within PGA1_c11700at 1212.155 kb on - strand, within PGA1_c11700at 1212.155 kb on - strand, within PGA1_c11700at 1212.155 kb on - strand, within PGA1_c11700at 1212.181 kb on - strand, within PGA1_c11700at 1212.273 kb on - strand, within PGA1_c11700at 1212.361 kb on - strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.396 kb on + strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.404 kb on - strand, within PGA1_c11700at 1212.437 kb on - strand, within PGA1_c11700at 1212.525 kb on + strandat 1212.525 kb on + strandat 1212.525 kb on + strandat 1212.525 kb on + strandat 1212.533 kb on - strandat 1212.533 kb on - strandat 1212.602 kb on - strandat 1212.636 kb on - strandat 1212.687 kb on + strandat 1212.782 kb on + strandat 1212.790 kb on - strandat 1212.846 kb on + strand, within PGA1_c11710at 1212.932 kb on + strand, within PGA1_c11710at 1212.932 kb on + strand, within PGA1_c11710at 1212.932 kb on + strand, within PGA1_c11710at 1212.940 kb on - strand, within PGA1_c11710at 1212.940 kb on - strand, within PGA1_c11710at 1213.043 kb on - strand, within PGA1_c11710at 1213.050 kb on + strand, within PGA1_c11710at 1213.068 kb on - strand, within PGA1_c11710at 1213.097 kb on - strand, within PGA1_c11710at 1213.118 kb on + strand, within PGA1_c11710at 1213.204 kb on - strand, within PGA1_c11710at 1213.273 kb on + strand, within PGA1_c11710at 1213.281 kb on + strand, within PGA1_c11710at 1213.281 kb on - strand, within PGA1_c11710at 1213.346 kb on + strand, within PGA1_c11710at 1213.354 kb on - strand, within PGA1_c11710at 1213.433 kb on + strand, within PGA1_c11710at 1213.438 kb on + strand, within PGA1_c11710at 1213.479 kb on - strand, within PGA1_c11710at 1213.497 kb on + strand, within PGA1_c11710at 1213.497 kb on - strand, within PGA1_c11710at 1213.497 kb on - strand, within PGA1_c11710at 1213.510 kb on + strand, within PGA1_c11710at 1213.573 kb on - strandat 1213.574 kb on + strandat 1213.645 kb on - strandat 1213.645 kb on - strandat 1213.645 kb on - strandat 1213.654 kb on + strandat 1213.654 kb on + strandat 1213.676 kb on + strandat 1213.706 kb on + strandat 1213.709 kb on - strandat 1214.578 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 800 mM
remove
1,211,709 - -1.0
1,211,799 + -1.3
1,211,804 + +0.1
1,211,807 - +0.6
1,211,812 - -0.4
1,211,812 - -1.1
1,211,812 - -0.5
1,211,829 - PGA1_c11700 0.10 -1.2
1,211,838 + PGA1_c11700 0.11 -0.4
1,211,858 + PGA1_c11700 0.14 +0.0
1,211,866 - PGA1_c11700 0.15 -0.4
1,211,866 - PGA1_c11700 0.15 -0.8
1,211,883 - PGA1_c11700 0.17 +0.1
1,211,959 - PGA1_c11700 0.25 -0.8
1,211,989 + PGA1_c11700 0.29 +0.2
1,212,048 - PGA1_c11700 0.36 +0.9
1,212,131 - PGA1_c11700 0.45 -0.0
1,212,147 + PGA1_c11700 0.47 -0.1
1,212,147 + PGA1_c11700 0.47 -0.9
1,212,147 + PGA1_c11700 0.47 +0.2
1,212,147 + PGA1_c11700 0.47 -0.4
1,212,155 - PGA1_c11700 0.48 -0.3
1,212,155 - PGA1_c11700 0.48 +0.3
1,212,155 - PGA1_c11700 0.48 -0.0
1,212,181 - PGA1_c11700 0.51 -0.5
1,212,273 - PGA1_c11700 0.61 +0.2
1,212,361 - PGA1_c11700 0.71 +0.1
1,212,396 + PGA1_c11700 0.76 +0.4
1,212,396 + PGA1_c11700 0.76 -0.1
1,212,396 + PGA1_c11700 0.76 -0.1
1,212,396 + PGA1_c11700 0.76 -0.9
1,212,396 + PGA1_c11700 0.76 -0.1
1,212,396 + PGA1_c11700 0.76 +0.1
1,212,404 - PGA1_c11700 0.76 +2.2
1,212,404 - PGA1_c11700 0.76 -1.6
1,212,404 - PGA1_c11700 0.76 -0.2
1,212,404 - PGA1_c11700 0.76 -0.8
1,212,404 - PGA1_c11700 0.76 +0.2
1,212,404 - PGA1_c11700 0.76 -0.4
1,212,404 - PGA1_c11700 0.76 -0.5
1,212,404 - PGA1_c11700 0.76 -1.8
1,212,437 - PGA1_c11700 0.80 +0.3
1,212,525 + -0.4
1,212,525 + -1.4
1,212,525 + -0.5
1,212,525 + +0.7
1,212,533 - -0.9
1,212,533 - +1.2
1,212,602 - -0.4
1,212,636 - +0.5
1,212,687 + +0.1
1,212,782 + +0.2
1,212,790 - +0.1
1,212,846 + PGA1_c11710 0.16 -0.6
1,212,932 + PGA1_c11710 0.25 +0.0
1,212,932 + PGA1_c11710 0.25 -0.8
1,212,932 + PGA1_c11710 0.25 -0.1
1,212,940 - PGA1_c11710 0.26 -1.6
1,212,940 - PGA1_c11710 0.26 -1.3
1,213,043 - PGA1_c11710 0.37 -0.6
1,213,050 + PGA1_c11710 0.38 +0.4
1,213,068 - PGA1_c11710 0.40 -0.5
1,213,097 - PGA1_c11710 0.43 +0.1
1,213,118 + PGA1_c11710 0.46 +0.5
1,213,204 - PGA1_c11710 0.55 -0.5
1,213,273 + PGA1_c11710 0.63 -0.1
1,213,281 + PGA1_c11710 0.64 -0.9
1,213,281 - PGA1_c11710 0.64 +0.2
1,213,346 + PGA1_c11710 0.71 -0.5
1,213,354 - PGA1_c11710 0.72 -2.4
1,213,433 + PGA1_c11710 0.80 +0.9
1,213,438 + PGA1_c11710 0.81 +0.8
1,213,479 - PGA1_c11710 0.85 +0.8
1,213,497 + PGA1_c11710 0.87 -0.5
1,213,497 - PGA1_c11710 0.87 +1.1
1,213,497 - PGA1_c11710 0.87 +1.0
1,213,510 + PGA1_c11710 0.89 -0.4
1,213,573 - +0.5
1,213,574 + -0.1
1,213,645 - +0.2
1,213,645 - +0.0
1,213,645 - -0.7
1,213,654 + -0.1
1,213,654 + +0.7
1,213,676 + +0.0
1,213,706 + -0.1
1,213,709 - -0.1
1,214,578 - -1.1

Or see this region's nucleotide sequence