Experiment: Fusidic 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23380 and BWI76_RS23385 overlap by 8 nucleotides BWI76_RS23385 and BWI76_RS23390 are separated by 12 nucleotides BWI76_RS23390 and BWI76_RS23395 are separated by 16 nucleotides
BWI76_RS23380: BWI76_RS23380 - sugar ABC transporter permease, at 4,875,298 to 4,876,188
_RS23380
BWI76_RS23385: BWI76_RS23385 - sugar ABC transporter permease, at 4,876,181 to 4,877,083
_RS23385
BWI76_RS23390: BWI76_RS23390 - oligogalacturonide ABC transporter ATP-binding protein, at 4,877,096 to 4,878,223
_RS23390
BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526
_RS23395
Position (kb)
4877
4878
4879 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4876.233 kb on - strand at 4876.310 kb on - strand, within BWI76_RS23385 at 4876.322 kb on + strand, within BWI76_RS23385 at 4876.371 kb on + strand, within BWI76_RS23385 at 4876.444 kb on - strand, within BWI76_RS23385 at 4876.610 kb on - strand, within BWI76_RS23385 at 4876.613 kb on - strand, within BWI76_RS23385 at 4876.694 kb on + strand, within BWI76_RS23385 at 4876.798 kb on + strand, within BWI76_RS23385 at 4877.043 kb on + strand at 4877.168 kb on - strand at 4877.402 kb on - strand, within BWI76_RS23390 at 4877.602 kb on + strand, within BWI76_RS23390 at 4877.625 kb on + strand, within BWI76_RS23390 at 4877.690 kb on + strand, within BWI76_RS23390 at 4877.702 kb on + strand, within BWI76_RS23390 at 4877.717 kb on + strand, within BWI76_RS23390 at 4877.730 kb on + strand, within BWI76_RS23390 at 4877.763 kb on - strand, within BWI76_RS23390 at 4877.996 kb on - strand, within BWI76_RS23390 at 4878.172 kb on + strand at 4878.225 kb on + strand at 4878.548 kb on - strand, within BWI76_RS23395 at 4878.548 kb on - strand, within BWI76_RS23395 at 4878.585 kb on - strand, within BWI76_RS23395 at 4878.587 kb on + strand, within BWI76_RS23395 at 4878.637 kb on - strand, within BWI76_RS23395 at 4878.955 kb on - strand, within BWI76_RS23395 at 4878.959 kb on + strand, within BWI76_RS23395 at 4878.969 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.100 kb on - strand, within BWI76_RS23395 at 4879.102 kb on + strand, within BWI76_RS23395 at 4879.123 kb on + strand, within BWI76_RS23395
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml remove 4,876,233 - -0.6 4,876,310 - BWI76_RS23385 0.14 -0.1 4,876,322 + BWI76_RS23385 0.16 +0.1 4,876,371 + BWI76_RS23385 0.21 -0.0 4,876,444 - BWI76_RS23385 0.29 -0.7 4,876,610 - BWI76_RS23385 0.48 +0.5 4,876,613 - BWI76_RS23385 0.48 -0.0 4,876,694 + BWI76_RS23385 0.57 +0.2 4,876,798 + BWI76_RS23385 0.68 +0.2 4,877,043 + +2.1 4,877,168 - -0.5 4,877,402 - BWI76_RS23390 0.27 -0.8 4,877,602 + BWI76_RS23390 0.45 -1.1 4,877,625 + BWI76_RS23390 0.47 -1.1 4,877,690 + BWI76_RS23390 0.53 -0.9 4,877,702 + BWI76_RS23390 0.54 +1.2 4,877,717 + BWI76_RS23390 0.55 -0.5 4,877,730 + BWI76_RS23390 0.56 -1.5 4,877,763 - BWI76_RS23390 0.59 +0.1 4,877,996 - BWI76_RS23390 0.80 -0.2 4,878,172 + +0.4 4,878,225 + -0.5 4,878,548 - BWI76_RS23395 0.24 -0.5 4,878,548 - BWI76_RS23395 0.24 +0.6 4,878,585 - BWI76_RS23395 0.27 -1.5 4,878,587 + BWI76_RS23395 0.27 -0.8 4,878,637 - BWI76_RS23395 0.31 +1.1 4,878,955 - BWI76_RS23395 0.56 -0.8 4,878,959 + BWI76_RS23395 0.56 -0.1 4,878,969 - BWI76_RS23395 0.57 +0.0 4,879,015 - BWI76_RS23395 0.60 -2.0 4,879,015 - BWI76_RS23395 0.60 -0.3 4,879,100 - BWI76_RS23395 0.67 -1.7 4,879,102 + BWI76_RS23395 0.67 -0.9 4,879,123 + BWI76_RS23395 0.69 +0.1
Or see this region's nucleotide sequence