Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23390

Experiment: Fusidic 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23380 and BWI76_RS23385 overlap by 8 nucleotidesBWI76_RS23385 and BWI76_RS23390 are separated by 12 nucleotidesBWI76_RS23390 and BWI76_RS23395 are separated by 16 nucleotides BWI76_RS23380: BWI76_RS23380 - sugar ABC transporter permease, at 4,875,298 to 4,876,188 _RS23380 BWI76_RS23385: BWI76_RS23385 - sugar ABC transporter permease, at 4,876,181 to 4,877,083 _RS23385 BWI76_RS23390: BWI76_RS23390 - oligogalacturonide ABC transporter ATP-binding protein, at 4,877,096 to 4,878,223 _RS23390 BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526 _RS23395 Position (kb) 4877 4878 4879Strain fitness (log2 ratio) -2 -1 0 1 2at 4876.233 kb on - strandat 4876.310 kb on - strand, within BWI76_RS23385at 4876.322 kb on + strand, within BWI76_RS23385at 4876.371 kb on + strand, within BWI76_RS23385at 4876.444 kb on - strand, within BWI76_RS23385at 4876.610 kb on - strand, within BWI76_RS23385at 4876.613 kb on - strand, within BWI76_RS23385at 4876.694 kb on + strand, within BWI76_RS23385at 4876.798 kb on + strand, within BWI76_RS23385at 4877.043 kb on + strandat 4877.168 kb on - strandat 4877.402 kb on - strand, within BWI76_RS23390at 4877.602 kb on + strand, within BWI76_RS23390at 4877.625 kb on + strand, within BWI76_RS23390at 4877.690 kb on + strand, within BWI76_RS23390at 4877.702 kb on + strand, within BWI76_RS23390at 4877.717 kb on + strand, within BWI76_RS23390at 4877.730 kb on + strand, within BWI76_RS23390at 4877.763 kb on - strand, within BWI76_RS23390at 4877.996 kb on - strand, within BWI76_RS23390at 4878.172 kb on + strandat 4878.225 kb on + strandat 4878.548 kb on - strand, within BWI76_RS23395at 4878.548 kb on - strand, within BWI76_RS23395at 4878.585 kb on - strand, within BWI76_RS23395at 4878.587 kb on + strand, within BWI76_RS23395at 4878.637 kb on - strand, within BWI76_RS23395at 4878.955 kb on - strand, within BWI76_RS23395at 4878.959 kb on + strand, within BWI76_RS23395at 4878.969 kb on - strand, within BWI76_RS23395at 4879.015 kb on - strand, within BWI76_RS23395at 4879.015 kb on - strand, within BWI76_RS23395at 4879.100 kb on - strand, within BWI76_RS23395at 4879.102 kb on + strand, within BWI76_RS23395at 4879.123 kb on + strand, within BWI76_RS23395

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml
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4,876,233 - -0.6
4,876,310 - BWI76_RS23385 0.14 -0.1
4,876,322 + BWI76_RS23385 0.16 +0.1
4,876,371 + BWI76_RS23385 0.21 -0.0
4,876,444 - BWI76_RS23385 0.29 -0.7
4,876,610 - BWI76_RS23385 0.48 +0.5
4,876,613 - BWI76_RS23385 0.48 -0.0
4,876,694 + BWI76_RS23385 0.57 +0.2
4,876,798 + BWI76_RS23385 0.68 +0.2
4,877,043 + +2.1
4,877,168 - -0.5
4,877,402 - BWI76_RS23390 0.27 -0.8
4,877,602 + BWI76_RS23390 0.45 -1.1
4,877,625 + BWI76_RS23390 0.47 -1.1
4,877,690 + BWI76_RS23390 0.53 -0.9
4,877,702 + BWI76_RS23390 0.54 +1.2
4,877,717 + BWI76_RS23390 0.55 -0.5
4,877,730 + BWI76_RS23390 0.56 -1.5
4,877,763 - BWI76_RS23390 0.59 +0.1
4,877,996 - BWI76_RS23390 0.80 -0.2
4,878,172 + +0.4
4,878,225 + -0.5
4,878,548 - BWI76_RS23395 0.24 -0.5
4,878,548 - BWI76_RS23395 0.24 +0.6
4,878,585 - BWI76_RS23395 0.27 -1.5
4,878,587 + BWI76_RS23395 0.27 -0.8
4,878,637 - BWI76_RS23395 0.31 +1.1
4,878,955 - BWI76_RS23395 0.56 -0.8
4,878,959 + BWI76_RS23395 0.56 -0.1
4,878,969 - BWI76_RS23395 0.57 +0.0
4,879,015 - BWI76_RS23395 0.60 -2.0
4,879,015 - BWI76_RS23395 0.60 -0.3
4,879,100 - BWI76_RS23395 0.67 -1.7
4,879,102 + BWI76_RS23395 0.67 -0.9
4,879,123 + BWI76_RS23395 0.69 +0.1

Or see this region's nucleotide sequence