Experiment: Fusidic 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04620 and BWI76_RS04625 are separated by 87 nucleotides BWI76_RS04625 and BWI76_RS04630 are separated by 231 nucleotides
BWI76_RS04620: BWI76_RS04620 - transcriptional regulator SgrR, at 961,923 to 963,578
_RS04620
BWI76_RS04625: BWI76_RS04625 - glucose uptake inhibitor SgrT, at 963,666 to 963,818
_RS04625
BWI76_RS04630: BWI76_RS04630 - sugar efflux transporter SetB, at 964,050 to 965,234
_RS04630
Position (kb) 963
964 Strain fitness (log2 ratio) -1
0
1
2 at 962.759 kb on + strand, within BWI76_RS04620 at 962.761 kb on + strand, within BWI76_RS04620 at 962.837 kb on - strand, within BWI76_RS04620 at 962.885 kb on + strand, within BWI76_RS04620 at 962.885 kb on + strand, within BWI76_RS04620 at 963.194 kb on + strand, within BWI76_RS04620 at 963.230 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.364 kb on + strand, within BWI76_RS04620 at 963.397 kb on + strand, within BWI76_RS04620 at 963.774 kb on + strand, within BWI76_RS04625 at 963.785 kb on + strand, within BWI76_RS04625 at 963.805 kb on + strand at 963.805 kb on + strand at 963.813 kb on - strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.827 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 963.975 kb on + strand at 964.159 kb on + strand at 964.203 kb on + strand, within BWI76_RS04630 at 964.208 kb on + strand, within BWI76_RS04630 at 964.246 kb on + strand, within BWI76_RS04630 at 964.263 kb on + strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.365 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.386 kb on - strand, within BWI76_RS04630 at 964.464 kb on + strand, within BWI76_RS04630 at 964.496 kb on + strand, within BWI76_RS04630 at 964.524 kb on + strand, within BWI76_RS04630 at 964.593 kb on + strand, within BWI76_RS04630 at 964.595 kb on + strand, within BWI76_RS04630 at 964.600 kb on + strand, within BWI76_RS04630 at 964.658 kb on - strand, within BWI76_RS04630 at 964.807 kb on + strand, within BWI76_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 1 mg/ml remove 962,759 + BWI76_RS04620 0.50 -1.1 962,761 + BWI76_RS04620 0.51 +0.0 962,837 - BWI76_RS04620 0.55 +0.1 962,885 + BWI76_RS04620 0.58 +0.7 962,885 + BWI76_RS04620 0.58 +0.8 963,194 + BWI76_RS04620 0.77 -0.6 963,230 + BWI76_RS04620 0.79 -0.5 963,364 + BWI76_RS04620 0.87 +0.2 963,364 + BWI76_RS04620 0.87 -0.6 963,397 + BWI76_RS04620 0.89 +1.3 963,774 + BWI76_RS04625 0.71 -1.0 963,785 + BWI76_RS04625 0.78 -0.7 963,805 + -0.1 963,805 + -0.2 963,813 - +0.1 963,827 + -0.3 963,827 + -0.7 963,827 + +0.8 963,975 + -0.6 963,975 + -0.3 963,975 + -0.1 964,159 + -0.4 964,203 + BWI76_RS04630 0.13 +1.1 964,208 + BWI76_RS04630 0.13 +0.5 964,246 + BWI76_RS04630 0.17 -1.3 964,263 + BWI76_RS04630 0.18 +0.2 964,365 - BWI76_RS04630 0.27 +1.9 964,365 - BWI76_RS04630 0.27 +0.2 964,386 - BWI76_RS04630 0.28 -0.3 964,386 - BWI76_RS04630 0.28 +0.0 964,464 + BWI76_RS04630 0.35 -0.2 964,496 + BWI76_RS04630 0.38 -0.2 964,524 + BWI76_RS04630 0.40 -0.1 964,593 + BWI76_RS04630 0.46 -0.3 964,595 + BWI76_RS04630 0.46 +0.5 964,600 + BWI76_RS04630 0.46 +0.5 964,658 - BWI76_RS04630 0.51 -0.9 964,807 + BWI76_RS04630 0.64 +0.1
Or see this region's nucleotide sequence