Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3178

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3177 and DvMF_3178 are separated by 103 nucleotidesDvMF_3178 and DvMF_3179 are separated by 293 nucleotidesDvMF_3179 and DvMF_3180 are separated by 168 nucleotides DvMF_3177: DvMF_3177 - protein of unknown function UPF0029 (RefSeq), at 4,008,335 to 4,009,159 _3177 DvMF_3178: DvMF_3178 - 6-phosphogluconolactonase (RefSeq), at 4,009,263 to 4,010,000 _3178 DvMF_3179: DvMF_3179 - OsmC family protein (RefSeq), at 4,010,294 to 4,010,773 _3179 DvMF_3180: DvMF_3180 - beta-lactamase domain protein (RefSeq), at 4,010,942 to 4,011,688 _3180 Position (kb) 4009 4010 4011Strain fitness (log2 ratio) -1 0 1at 4008.278 kb on + strandat 4008.440 kb on + strand, within DvMF_3177at 4009.129 kb on + strandat 4009.229 kb on + strandat 4009.298 kb on + strandat 4009.751 kb on + strand, within DvMF_3178at 4009.766 kb on + strand, within DvMF_3178at 4009.769 kb on - strand, within DvMF_3178at 4009.824 kb on + strand, within DvMF_3178at 4009.868 kb on + strand, within DvMF_3178at 4010.056 kb on + strandat 4010.168 kb on + strandat 4010.338 kb on - strandat 4010.413 kb on + strand, within DvMF_3179at 4010.550 kb on + strand, within DvMF_3179at 4010.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,008,278 + -0.7
4,008,440 + DvMF_3177 0.13 -0.2
4,009,129 + -0.3
4,009,229 + -0.6
4,009,298 + +1.0
4,009,751 + DvMF_3178 0.66 +0.8
4,009,766 + DvMF_3178 0.68 +0.1
4,009,769 - DvMF_3178 0.69 +1.5
4,009,824 + DvMF_3178 0.76 +0.4
4,009,868 + DvMF_3178 0.82 +0.3
4,010,056 + -0.1
4,010,168 + -0.6
4,010,338 - -0.4
4,010,413 + DvMF_3179 0.25 -0.2
4,010,550 + DvMF_3179 0.53 -0.4
4,010,911 - +1.5

Or see this region's nucleotide sequence